MELO3C002147 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002147
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Replicase polyprotein 1ab
Location	chr12 : 24854165 .. 24854885 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGCTTTTCCCATTTCCTCACCCAACTTCCATCCTTCCCTCCCTTCTTACGTCTCGTTCTCTCTTATTATATAAATCCCCTCGCCTTCTTAAACCTTTCTCCGTTCGTTCTACACATCATTCCAACCGATTCTTCGACTTAGGGCTTCNNNNNNNNNNNNNNNNNNNNTTTTGGGTTTGTTGGGATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAGAAGGAGATTGTTTCCGGTAGAGATATTTTGGGGCTTATTTCGTCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTAGTTTATGTAAATATTGCTGTTCTTAATTTTTAATTAGAGAGGTTTTTGGTTTCTGGATTTTGAATTTTGTATATTACTTATCTTTCTCTTTCTTATAATTTATAGTATGATATTACTCAAACTCTCGAATTCCTTCGAGACTGTTCATATGGAGAATATAAAATTTCTTAGATAATTATTCCAAAGTTGGTTTGTTTGAACTAAAAGAAGAGGAAATTTTCGATTGTTCATCTT

mRNA sequence

GCGCTTTTCCCATTTCCTCACCCAACTTCCATCCTTCCCTCCCTTCTTACGTCTCGTTCTCTCTTATTATATAAATCCCCTCGCCTTCTTAAACCTTTCTCCGTTCGTTCTACACATCATTCCAACCGATTCTTCGACTTAGGGCTTCNNNNNNNNNNNNNNNNNNNNTTTTGGGTTTGTTGGGATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAGAAGGAGATTGTTTCCGGTAGAGATATTTTGGGGCTTATTTCGTCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTAGTTTATGTAAATATTGCTGTTCTTAATTTTTAATTAGAGAGGTTTTTGGTTTCTGGATTTTGAATTTTGTATATTACTTATCTTTCTCTTTCTTATAATTTATAGTATGATATTACTCAAACTCTCGAATTCCTTCGAGACTGTTCATATGGAGAATATAAAATTTCTTAGATAATTATTCCAAAGTTGGTTTGTTTGAACTAAAAGAAGAGGAAATTTTCGATTGTTCATCTT

Coding sequence (CDS)

ATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Protein sequence

MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGDS*

Homology

[Close]

BLAST of MELO3C002147 vs. TrEMBL
Match: A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-28
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of MELO3C002147 vs. TrEMBL
Match: A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGISGRPISVGDS 74
          P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]

BLAST of MELO3C002147 vs. TrEMBL
Match: I1KJ78_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGISGRPISVGDS 74
          P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]

BLAST of MELO3C002147 vs. TrEMBL
Match: A0A151R370_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF---RQISRSPLGISGRPISVGDS 74
          P+HSQVRKIK+ESE I+DW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]

BLAST of MELO3C002147 vs. TrEMBL
Match: A0A0B2SH40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-12
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 6  DMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGIS 65
          +M+  N     +   PVHSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGIS
Sbjct: 3  NMKMNNDERFAQKGVPVHSQVMKIKQESEKIVDWSPGKPEIRSVLREISRQISRSPLGIS 62

Query: 66 GRPISVGDS 74
          G+PISVG+S
Sbjct: 63 GQPISVGES 71

[Close]

BLAST of MELO3C002147 vs. NCBI nr
Match: gi|700209094|gb|KGN64190.1| (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of MELO3C002147 vs. NCBI nr
Match: gi|734429731|gb|KHN45262.1| (hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGISGRPISVGDS 74
          P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]

BLAST of MELO3C002147 vs. NCBI nr
Match: gi|1012324975|gb|KYP36915.1| (hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF---RQISRSPLGISGRPISVGDS 74
          P+HSQVRKIK+ESE I+DW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]

BLAST of MELO3C002147 vs. NCBI nr
Match: gi|734426036|gb|KHN43647.1| (hypothetical protein glysoja_027713 [Glycine soja])

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-12
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 6  DMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGIS 65
          +M+  N     +   PVHSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGIS
Sbjct: 3  NMKMNNDERFAQKGVPVHSQVMKIKQESEKIVDWSPGKPEIRSVLREISRQISRSPLGIS 62

Query: 66 GRPISVGDS 74
          G+PISVG+S
Sbjct: 63 GQPISVGES 71

[Close]

BLAST of MELO3C002147 vs. NCBI nr
Match: gi|947100180|gb|KRH48672.1| (hypothetical protein GLYMA_07G104300 [Glycine max])

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 21 PVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF-RQISRSPLGISGRPISVG 72
          P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGISGRPISVG
Sbjct: 13 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVG 64

The following BLAST results are available for this feature:

BLAST of MELO3C002147 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ2_CUCSA	1.6e-28	87.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1	[more]
A0A0B2SM01_GLYSO	1.2e-12	72.22	Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1	[more]
I1KJ78_SOYBN	1.2e-12	72.22	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A151R370_CAJCA	3.6e-12	67.86	Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1	[more]
A0A0B2SH40_GLYSO	3.6e-12	59.42	Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1	[more]

BLAST of MELO3C002147 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209094\|gb\|KGN64190.1\|	2.3e-28	87.67	hypothetical protein Csa_1G042955 [Cucumis sativus]	[more]
gi\|734429731\|gb\|KHN45262.1\|	1.8e-12	72.22	hypothetical protein glysoja_041948 [Glycine soja]	[more]
gi\|1012324975\|gb\|KYP36915.1\|	5.2e-12	67.86	hypothetical protein KK1_041930 [Cajanus cajan]	[more]
gi\|734426036\|gb\|KHN43647.1\|	5.2e-12	59.42	hypothetical protein glysoja_027713 [Glycine soja]	[more]
gi\|947100180\|gb\|KRH48672.1\|	8.9e-12	73.08	hypothetical protein GLYMA_07G104300 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49832	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002147T1	MELO3C002147T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49832	MU49832	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 1..73 score: 2.4
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 1..73 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002147	Cla018440	Watermelon (97103) v1	mewmB174
MELO3C002147	ClCG04G010470	Watermelon (Charleston Gray)	mewcgB154
MELO3C002147	Cla97C04G077310	Watermelon (97103) v2	mewmbB159
MELO3C002147	Bhi08G001091	Wax gourd	mewgoB173
MELO3C002147	Cucsa.122070	Cucumber (Gy14) v1	cgymeB185
MELO3C002147	CmaCh18G000820	Cucurbita maxima (Rimu)	cmameB365
MELO3C002147	CmaCh13G009780	Cucurbita maxima (Rimu)	cmameB193
MELO3C002147	Lsi02G002490	Bottle gourd (USVL1VR-Ls)	lsimeB179
MELO3C002147	CsGy1G007210	Cucumber (Gy14) v2	cgybmeB022
MELO3C002147	Carg06637	Silver-seed gourd	carmeB0499
MELO3C002147	CsaV3_1G007310	Cucumber (Chinese Long) v3	cucmeB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002147	Cucurbita moschata (Rifu)	cmomeB180
MELO3C002147	Cucurbita moschata (Rifu)	cmomeB356
MELO3C002147	Wild cucumber (PI 183967)	cpimeB024
MELO3C002147	Cucumber (Chinese Long) v2	cumeB027
MELO3C002147	Cucurbita pepo (Zucchini)	cpemeB026
MELO3C002147	Cucurbita pepo (Zucchini)	cpemeB478
MELO3C002147	Silver-seed gourd	carmeB0393