Cucsa.122070 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.122070
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00999 : 407201 .. 407386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

mRNA sequence

ATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Coding sequence (CDS)

ATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Protein sequence

MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGDS*
Homology
[Close]
BLAST of Cucsa.122070 vs. TrEMBL
Match: A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD 60
          MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD
Sbjct: 13 MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD 72

Query: 61 S 62
          S
Sbjct: 73 S 73

[Close]
BLAST of Cucsa.122070 vs. TrEMBL
Match: A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 62
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]
BLAST of Cucsa.122070 vs. TrEMBL
Match: I1KJ78_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 62
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]
BLAST of Cucsa.122070 vs. TrEMBL
Match: A0A151R370_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-12
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF---RQISRSPLGISGRPISVGDS 62
          P+HSQVRKIK+ES+  IDW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]
BLAST of Cucsa.122070 vs. TrEMBL
Match: V7C5W2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G148400g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-11
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 62
          P+H+QVRKIK+ES+  +DW PG+P+IR       RQISRSPLGISG+PISVGDS
Sbjct: 18 PIHNQVRKIKQESEEIVDWSPGKPQIRHVLREISRQISRSPLGISGQPISVGDS 71

[Close]
BLAST of Cucsa.122070 vs. NCBI nr
Match: gi|700209094|gb|KGN64190.1| (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD 60
          MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD
Sbjct: 13 MEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGD 72

Query: 61 S 62
          S
Sbjct: 73 S 73

[Close]
BLAST of Cucsa.122070 vs. NCBI nr
Match: gi|734429731|gb|KHN45262.1| (hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 62
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]
BLAST of Cucsa.122070 vs. NCBI nr
Match: gi|1012324975|gb|KYP36915.1| (hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF---RQISRSPLGISGRPISVGDS 62
          P+HSQVRKIK+ES+  IDW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]
BLAST of Cucsa.122070 vs. NCBI nr
Match: gi|947100180|gb|KRH48672.1| (hypothetical protein GLYMA_07G104300 [Glycine max])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVG 60
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG
Sbjct: 13 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVG 64

[Close]
BLAST of Cucsa.122070 vs. NCBI nr
Match: gi|593704575|ref|XP_007152661.1| (hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-11
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 9  PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 62
          P+H+QVRKIK+ES+  +DW PG+P+IR       RQISRSPLGISG+PISVGDS
Sbjct: 18 PIHNQVRKIKQESEEIVDWSPGKPQIRHVLREISRQISRSPLGISGQPISVGDS 71

The following BLAST results are available for this feature:
BLAST of Cucsa.122070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQJ2_CUCSA7.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1[more]
A0A0B2SM01_GLYSO4.0e-1268.52Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1[more]
I1KJ78_SOYBN4.0e-1268.52Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A151R370_CAJCA8.8e-1266.07Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1[more]
V7C5W2_PHAVU2.0e-1166.67Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G148400g PE=4 SV=1[more]
BLAST of Cucsa.122070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209094|gb|KGN64190.1|1.1e-26100.00hypothetical protein Csa_1G042955 [Cucumis sativus][more]
gi|734429731|gb|KHN45262.1|5.7e-1268.52hypothetical protein glysoja_041948 [Glycine soja][more]
gi|1012324975|gb|KYP36915.1|1.3e-1166.07hypothetical protein KK1_041930 [Cajanus cajan][more]
gi|947100180|gb|KRH48672.1|2.8e-1169.23hypothetical protein GLYMA_07G104300 [Glycine max][more]
gi|593704575|ref|XP_007152661.1|2.8e-1166.67hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.122070.1Cucsa.122070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34780FAMILY NOT NAMEDcoord: 8..61
score: 2.7
NoneNo IPR availablePANTHERPTHR34780:SF2SUBFAMILY NOT NAMEDcoord: 8..61
score: 2.7