Cla018440 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018440
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr4 : 22055147 .. 22055365 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCCGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

mRNA sequence

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCCGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

Coding sequence (CDS)

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCCGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

Protein sequence

MSNSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGES

Homology

[Close]

BLAST of Cla018440 vs. TrEMBL
Match: A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-26
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 4  SENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGIS 63
          S+ RE NSMEKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPPTA+FRQISRSPLGIS
Sbjct: 5  SDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGIS 64

Query: 64 GRPISVGES 73
          GRPISVG+S
Sbjct: 65 GRPISVGDS 73

[Close]

BLAST of Cla018440 vs. TrEMBL
Match: A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.4e-14
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N  E+      P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGI
Sbjct: 2  ENMKMNKDERFAQKGVPIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SGRPISVGES
Sbjct: 62 SGRPISVGES 71

[Close]

BLAST of Cla018440 vs. TrEMBL
Match: I1KJ78_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.4e-14
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N  E+      P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGI
Sbjct: 2  ENMKMNKDERFAQKGVPIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SGRPISVGES
Sbjct: 62 SGRPISVGES 71

[Close]

BLAST of Cla018440 vs. TrEMBL
Match: A0A0B2SH40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N+ E+      PVHSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGI
Sbjct: 2  ENMKMNNDERFAQKGVPVHSQVMKIKQESEKIVDWSPGKPEIRSVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SG+PISVGES
Sbjct: 62 SGQPISVGES 71

[Close]

BLAST of Cla018440 vs. TrEMBL
Match: I1L433_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-13
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N+ E+      PVHSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGI
Sbjct: 2  ENMKMNNDERFAQKGVPVHSQVMKIKQESEKIVDWSPGKPEIRSVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SG+PISVGES
Sbjct: 62 SGQPISVGES 71

[Close]

BLAST of Cla018440 vs. NCBI nr
Match: gi|700209094|gb|KGN64190.1| (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 4  SENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGIS 63
          S+ RE NSMEKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPPTA+FRQISRSPLGIS
Sbjct: 5  SDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGIS 64

Query: 64 GRPISVGES 73
          GRPISVG+S
Sbjct: 65 GRPISVGDS 73

[Close]

BLAST of Cla018440 vs. NCBI nr
Match: gi|734429731|gb|KHN45262.1| (hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N  E+      P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGI
Sbjct: 2  ENMKMNKDERFAQKGVPIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SGRPISVGES
Sbjct: 62 SGRPISVGES 71

[Close]

BLAST of Cla018440 vs. NCBI nr
Match: gi|734426036|gb|KHN43647.1| (hypothetical protein glysoja_027713 [Glycine soja])

HSP 1 Score: 81.3 bits (199), Expect = 7.8e-13
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N+ E+      PVHSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGI
Sbjct: 2  ENMKMNNDERFAQKGVPVHSQVMKIKQESEKIVDWSPGKPEIRSVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SG+PISVGES
Sbjct: 62 SGQPISVGES 71

[Close]

BLAST of Cla018440 vs. NCBI nr
Match: gi|1012324975|gb|KYP36915.1| (hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1


Query: 20 PVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF---RQISRSPLGISGRPISVGES 73
          P+HSQVRKIK+ESE IIDW PG+PE+RP        R ISRSPLGISG+PISVGES
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]

BLAST of Cla018440 vs. NCBI nr
Match: gi|965617523|dbj|BAU02673.1| (hypothetical protein VIGAN_11223200 [Vigna angularis var. angularis])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N  E+      P+HSQV KIK+ESE I+DW PG+PEIR       RQISRSPLGI
Sbjct: 2  ENMKMNKDERFAQKGVPIHSQVMKIKQESEEIVDWSPGKPEIRHVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SG+PISVGES
Sbjct: 62 SGQPISVGES 71

The following BLAST results are available for this feature:

BLAST of Cla018440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ2_CUCSA	1.1e-26	88.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1	[more]
A0A0B2SM01_GLYSO	8.4e-14	62.86	Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1	[more]
I1KJ78_SOYBN	8.4e-14	62.86	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2SH40_GLYSO	5.4e-13	62.86	Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1	[more]
I1L433_SOYBN	5.4e-13	62.86	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Cla018440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209094\|gb\|KGN64190.1\|	1.6e-26	88.41	hypothetical protein Csa_1G042955 [Cucumis sativus]	[more]
gi\|734429731\|gb\|KHN45262.1\|	1.2e-13	62.86	hypothetical protein glysoja_041948 [Glycine soja]	[more]
gi\|734426036\|gb\|KHN43647.1\|	7.8e-13	62.86	hypothetical protein glysoja_027713 [Glycine soja]	[more]
gi\|1012324975\|gb\|KYP36915.1\|	1.0e-12	71.43	hypothetical protein KK1_041930 [Cajanus cajan]	[more]
gi\|965617523\|dbj\|BAU02673.1\|	1.7e-12	61.43	hypothetical protein VIGAN_11223200 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU30840	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU53625	watermelon EST collection version 2.0	transcribed_cluster
WMU55146	watermelon EST collection version 2.0	transcribed_cluster
WMU69430	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018440	Cla018440.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU30840	WMU30840	transcribed_cluster
WMU53625	WMU53625	transcribed_cluster
WMU55146	WMU55146	transcribed_cluster
WMU69430	WMU69430	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 3..72 score: 3.0
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 3..72 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018440	Cla97C04G077310	Watermelon (97103) v2	wmwmbB291
Cla018440	MELO3C002147	Melon (DHL92) v3.5.1	mewmB174
Cla018440	ClCG04G010470	Watermelon (Charleston Gray)	wcgwmB255
Cla018440	Cucsa.122070	Cucumber (Gy14) v1	cgywmB193
Cla018440	CmaCh13G009780	Cucurbita maxima (Rimu)	cmawmB206
Cla018440	CmaCh18G000820	Cucurbita maxima (Rimu)	cmawmB396
Cla018440	Lsi02G002490	Bottle gourd (USVL1VR-Ls)	lsiwmB212
Cla018440	CsGy1G007210	Cucumber (Gy14) v2	cgybwmB064
Cla018440	MELO3C002147.2	Melon (DHL92) v3.6.1	medwmB170
Cla018440	Carg06637	Silver-seed gourd	carwmB0493
Cla018440	CsaV3_1G007310	Cucumber (Chinese Long) v3	cucwmB070
Cla018440	Bhi08G001091	Wax gourd	wgowmB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018440	Cucurbita moschata (Rifu)	cmowmB194
Cla018440	Cucurbita moschata (Rifu)	cmowmB389
Cla018440	Cucumber (Chinese Long) v2	cuwmB062
Cla018440	Cucurbita pepo (Zucchini)	cpewmB049
Cla018440	Cucurbita pepo (Zucchini)	cpewmB523
Cla018440	Silver-seed gourd	carwmB0387