CmaCh18G000820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G000820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr18 : 367930 .. 368169 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGATTGGGGACCGGGACAGTCAGAGATCAGACCTCCAGCGGCCGCCTTCCGAGACATGAATCGGCCGATCTCTCGTTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCATAG

mRNA sequence

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGATTGGGGACCGGGACAGTCAGAGATCAGACCTCCAGCGGCCGCCTTCCGAGACATGAATCGGCCGATCTCTCGTTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCATAG

Coding sequence (CDS)

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGATTGGGGACCGGGACAGTCAGAGATCAGACCTCCAGCGGCCGCCTTCCGAGACATGAATCGGCCGATCTCTCGTTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCATAG

Protein sequence

MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNRPISRSPLGISGRPISVGDS

Homology

[Close]

BLAST of CmaCh18G000820 vs. TrEMBL
Match: A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 6  VNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNRPISRS 65
          V++     +MEKI   FPVHSQVRKIKEES+T IDW PGQ EIRPP A+FR     ISRS
Sbjct: 4  VSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRS 63

Query: 66 PLGISGRPISVGDS 80
          PLGISGRPISVGDS
Sbjct: 64 PLGISGRPISVGDS 73

[Close]

BLAST of CmaCh18G000820 vs. TrEMBL
Match: A0A151R370_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.1e-14
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 10 ENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNRPISRSPLGI 69
          EN + M+  G   P+HSQVRKIK+ESE IIDW PG+ E+RP        +RPISRSPLGI
Sbjct: 2  ENMKMMKDEGKGVPIHSQVRKIKQESEKIIDWSPGKPEVRPVLREI-GRDRPISRSPLGI 61

Query: 70 SGRPISVGDS 80
          SG+PISVG+S
Sbjct: 62 SGQPISVGES 70

[Close]

BLAST of CmaCh18G000820 vs. TrEMBL
Match: A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+N ++ R A + +    P+HSQV KI++ESE I+DW PG+ EIRP     R+++R
Sbjct: 1  MENMKMN-KDERFAQKGV----PIHSQVMKIRQESEKIVDWSPGKPEIRP---VLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISGRPISVG+S
Sbjct: 61 QISRSPLGISGRPISVGES 71

[Close]

BLAST of CmaCh18G000820 vs. TrEMBL
Match: I1KJ78_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+N ++ R A + +    P+HSQV KI++ESE I+DW PG+ EIRP     R+++R
Sbjct: 1  MENMKMN-KDERFAQKGV----PIHSQVMKIRQESEKIVDWSPGKPEIRP---VLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISGRPISVG+S
Sbjct: 61 QISRSPLGISGRPISVGES 71

[Close]

BLAST of CmaCh18G000820 vs. TrEMBL
Match: A0A0B2SH40_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.7e-13
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+NN E R A + +    PVHSQV KIK+ESE I+DW PG+ EIR   +  R+++R
Sbjct: 1  MENMKMNNDE-RFAQKGV----PVHSQVMKIKQESEKIVDWSPGKPEIR---SVLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVG+S
Sbjct: 61 QISRSPLGISGQPISVGES 71

[Close]

BLAST of CmaCh18G000820 vs. NCBI nr
Match: gi|700209094|gb|KGN64190.1| (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-18
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 6  VNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNRPISRS 65
          V++     +MEKI   FPVHSQVRKIKEES+T IDW PGQ EIRPP A+FR     ISRS
Sbjct: 4  VSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRS 63

Query: 66 PLGISGRPISVGDS 80
          PLGISGRPISVGDS
Sbjct: 64 PLGISGRPISVGDS 73

[Close]

BLAST of CmaCh18G000820 vs. NCBI nr
Match: gi|1012324975|gb|KYP36915.1| (hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-14
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 10 ENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNRPISRSPLGI 69
          EN + M+  G   P+HSQVRKIK+ESE IIDW PG+ E+RP        +RPISRSPLGI
Sbjct: 2  ENMKMMKDEGKGVPIHSQVRKIKQESEKIIDWSPGKPEVRPVLREI-GRDRPISRSPLGI 61

Query: 70 SGRPISVGDS 80
          SG+PISVG+S
Sbjct: 62 SGQPISVGES 70

[Close]

BLAST of CmaCh18G000820 vs. NCBI nr
Match: gi|734429731|gb|KHN45262.1| (hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+N ++ R A + +    P+HSQV KI++ESE I+DW PG+ EIRP     R+++R
Sbjct: 1  MENMKMN-KDERFAQKGV----PIHSQVMKIRQESEKIVDWSPGKPEIRP---VLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISGRPISVG+S
Sbjct: 61 QISRSPLGISGRPISVGES 71

[Close]

BLAST of CmaCh18G000820 vs. NCBI nr
Match: gi|734426036|gb|KHN43647.1| (hypothetical protein glysoja_027713 [Glycine soja])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+NN E R A + +    PVHSQV KIK+ESE I+DW PG+ EIR   +  R+++R
Sbjct: 1  MENMKMNNDE-RFAQKGV----PVHSQVMKIKQESEKIVDWSPGKPEIR---SVLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVG+S
Sbjct: 61 QISRSPLGISGQPISVGES 71

[Close]

BLAST of CmaCh18G000820 vs. NCBI nr
Match: gi|593704575|ref|XP_007152661.1| (hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQSEIRPPAAAFRDMNR 60
          ME+ K+N R+ R A + +    P+H+QVRKIK+ESE I+DW PG+ +IR      R+++R
Sbjct: 1  MENMKMN-RDERFAQKGV----PIHNQVRKIKQESEEIVDWSPGKPQIR---HVLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVGDS
Sbjct: 61 QISRSPLGISGQPISVGDS 71

The following BLAST results are available for this feature:

BLAST of CmaCh18G000820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G000820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQJ2_CUCSA	1.6e-18	70.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042955 PE=4 SV=1	[more]
A0A151R370_CAJCA	4.1e-14	61.43	Uncharacterized protein OS=Cajanus cajan GN=KK1_041930 PE=4 SV=1	[more]
A0A0B2SM01_GLYSO	2.7e-13	55.70	Uncharacterized protein OS=Glycine soja GN=glysoja_041948 PE=4 SV=1	[more]
I1KJ78_SOYBN	2.7e-13	55.70	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2SH40_GLYSO	2.7e-13	58.23	Uncharacterized protein OS=Glycine soja GN=glysoja_027713 PE=4 SV=1	[more]

BLAST of CmaCh18G000820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G000820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209094\|gb\|KGN64190.1\|	2.3e-18	70.27	hypothetical protein Csa_1G042955 [Cucumis sativus]	[more]
gi\|1012324975\|gb\|KYP36915.1\|	5.9e-14	61.43	hypothetical protein KK1_041930 [Cajanus cajan]	[more]
gi\|734429731\|gb\|KHN45262.1\|	3.8e-13	55.70	hypothetical protein glysoja_041948 [Glycine soja]	[more]
gi\|734426036\|gb\|KHN43647.1\|	3.8e-13	58.23	hypothetical protein glysoja_027713 [Glycine soja]	[more]
gi\|593704575\|ref\|XP_007152661.1\|	6.6e-13	55.70	hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G000820.1	CmaCh18G000820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 1..79 score: 3.7
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 1..79 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G000820	Cucsa.122070	Cucumber (Gy14) v1	cgycmaB0318
CmaCh18G000820	Cla018440	Watermelon (97103) v1	cmawmB396
CmaCh18G000820	MELO3C002147	Melon (DHL92) v3.5.1	cmameB365
CmaCh18G000820	ClCG04G010470	Watermelon (Charleston Gray)	cmawcgB363
CmaCh18G000820	Lsi02G002490	Bottle gourd (USVL1VR-Ls)	cmalsiB370
CmaCh18G000820	MELO3C002147.2	Melon (DHL92) v3.6.1	cmamedB424
CmaCh18G000820	CsaV3_1G007310	Cucumber (Chinese Long) v3	cmacucB0464
CmaCh18G000820	Cla97C04G077310	Watermelon (97103) v2	cmawmbB422
CmaCh18G000820	Bhi08G001091	Wax gourd	cmawgoB0520
CmaCh18G000820	CsGy1G007210	Cucumber (Gy14) v2	cgybcmaB085
CmaCh18G000820	Carg06637	Silver-seed gourd	carcmaB0692

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G000820	CmaCh13G009780	Cucurbita maxima (Rimu)	cmacmaB217

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G000820	Wild cucumber (PI 183967)	cmacpiB394
CmaCh18G000820	Cucurbita moschata (Rifu)	cmacmoB399
CmaCh18G000820	Cucurbita moschata (Rifu)	cmacmoB408
CmaCh18G000820	Cucumber (Chinese Long) v2	cmacuB390
CmaCh18G000820	Cucurbita pepo (Zucchini)	cmacpeB416
CmaCh18G000820	Cucurbita pepo (Zucchini)	cmacpeB439
CmaCh18G000820	Silver-seed gourd	carcmaB0541