Carg06637 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06637
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_012 : 124907 .. 125146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGACTGGGGACCGGGACAGCCTGAGATCAGACCTCTAGCGGCCGCCTTCCGAGACATGAATCGGCCTATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCGTAG

mRNA sequence

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGACTGGGGACCGGGACAGCCTGAGATCAGACCTCTAGCGGCCGCCTTCCGAGACATGAATCGGCCTATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCGTAG

Coding sequence (CDS)

ATGGAGGATTGGAAGGTGAACAATCGCGAGAACAGAGAGGCGATGGAGAAGATTGGAACTCTGTTTCCTGTTCATAGCCAGGTGAGGAAGATCAAAGAGGAATCGGAAACGATCATCGACTGGGGACCGGGACAGCCTGAGATCAGACCTCTAGCGGCCGCCTTCCGAGACATGAATCGGCCTATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGGCCGATTTCGGTGGGGGATTCGTAG

Protein sequence

MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSPLGISGRPISVGDS

Homology

[Close]

BLAST of Carg06637 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-18
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 6  VNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRS 65
          V++     +MEKI   FPVHSQVRKIKEES+T IDW PGQPEIRP  A+FR     ISRS
Sbjct: 4  VSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRS 63

Query: 66 PLGISGRPISVGDS 80
          PLGISGRPISVGDS
Sbjct: 64 PLGISGRPISVGDS 73

[Close]

BLAST of Carg06637 vs. NCBI nr
Match: XP_020205234.1 (uncharacterized protein LOC109790487 [Cajanus cajan] >KYP36915.1 hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 10 ENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSPLGI 69
          EN + M+  G   P+HSQVRKIK+ESE IIDW PG+PE+RP+       +RPISRSPLGI
Sbjct: 2  ENMKMMKDEGKGVPIHSQVRKIKQESEKIIDWSPGKPEVRPVLREI-GRDRPISRSPLGI 61

Query: 70 SGRPISVGDS 80
          SG+PISVG+S
Sbjct: 62 SGQPISVGES 70

[Close]

BLAST of Carg06637 vs. NCBI nr
Match: NP_001342481.1 (uncharacterized protein LOC111138524 [Glycine max] >KHN45262.1 hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+ N++ R A + +    P+HSQV KI++ESE I+DW PG+PEIRP+    R+++R
Sbjct: 1  MENMKM-NKDERFAQKGV----PIHSQVMKIRQESEKIVDWSPGKPEIRPV---LREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISGRPISVG+S
Sbjct: 61 QISRSPLGISGRPISVGES 71

[Close]

BLAST of Carg06637 vs. NCBI nr
Match: XP_025979584.1 (uncharacterized protein LOC112997783 [Glycine max] >KHN43647.1 hypothetical protein glysoja_027713 [Glycine soja])

HSP 1 Score: 85.9 bits (211), Expect = 6.8e-14
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+NN E R A + +    PVHSQV KIK+ESE I+DW PG+PEIR   +  R+++R
Sbjct: 1  MENMKMNNDE-RFAQKGV----PVHSQVMKIKQESEKIVDWSPGKPEIR---SVLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVG+S
Sbjct: 61 QISRSPLGISGQPISVGES 71

[Close]

BLAST of Carg06637 vs. NCBI nr
Match: XP_007152661.1 (hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris] >ESW24655.1 hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris])

HSP 1 Score: 85.5 bits (210), Expect = 8.8e-14
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+ NR+ R A + +    P+H+QVRKIK+ESE I+DW PG+P+IR +    R+++R
Sbjct: 1  MENMKM-NRDERFAQKGV----PIHNQVRKIKQESEEIVDWSPGKPQIRHV---LREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVGDS
Sbjct: 61 QISRSPLGISGQPISVGDS 71

[Close]

BLAST of Carg06637 vs. TAIR10
Match: AT1G67920.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.4e-05
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 24 VHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSPLGISGRPISVGD 79
          +HSQV KIK+E E I      QPE+R + +  +   R  SRSPLG+  R ISVG+
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRRVLSEIKRRQR--SRSPLGLGERSISVGN 67

[Close]

BLAST of Carg06637 vs. TrEMBL
Match: tr|A0A0A0LQJ2|A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.9e-18
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 6  VNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRS 65
          V++     +MEKI   FPVHSQVRKIKEES+T IDW PGQPEIRP  A+FR     ISRS
Sbjct: 4  VSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQ----ISRS 63

Query: 66 PLGISGRPISVGDS 80
          PLGISGRPISVGDS
Sbjct: 64 PLGISGRPISVGDS 73

[Close]

BLAST of Carg06637 vs. TrEMBL
Match: tr|A0A151R370|A0A151R370_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 10 ENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSPLGI 69
          EN + M+  G   P+HSQVRKIK+ESE IIDW PG+PE+RP+       +RPISRSPLGI
Sbjct: 2  ENMKMMKDEGKGVPIHSQVRKIKQESEKIIDWSPGKPEVRPVLREI-GRDRPISRSPLGI 61

Query: 70 SGRPISVGDS 80
          SG+PISVG+S
Sbjct: 62 SGQPISVGES 70

[Close]

BLAST of Carg06637 vs. TrEMBL
Match: tr|A0A0B2SM01|A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+ N++ R A + +    P+HSQV KI++ESE I+DW PG+PEIRP+    R+++R
Sbjct: 1  MENMKM-NKDERFAQKGV----PIHSQVMKIRQESEKIVDWSPGKPEIRPV---LREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISGRPISVG+S
Sbjct: 61 QISRSPLGISGRPISVGES 71

[Close]

BLAST of Carg06637 vs. TrEMBL
Match: tr|A0A0B2SH40|A0A0B2SH40_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_027713 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.5e-14
Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+NN E R A + +    PVHSQV KIK+ESE I+DW PG+PEIR   +  R+++R
Sbjct: 1  MENMKMNNDE-RFAQKGV----PVHSQVMKIKQESEKIVDWSPGKPEIR---SVLREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVG+S
Sbjct: 61 QISRSPLGISGQPISVGES 71

[Close]

BLAST of Carg06637 vs. TrEMBL
Match: tr|V7C5W2|V7C5W2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G148400g PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-14
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MEDWKVNNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNR 60
          ME+ K+ NR+ R A + +    P+H+QVRKIK+ESE I+DW PG+P+IR +    R+++R
Sbjct: 1  MENMKM-NRDERFAQKGV----PIHNQVRKIKQESEEIVDWSPGKPQIRHV---LREISR 60

Query: 61 PISRSPLGISGRPISVGDS 80
           ISRSPLGISG+PISVGDS
Sbjct: 61 QISRSPLGISGQPISVGDS 71

The following BLAST results are available for this feature:

BLAST of Carg06637 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64190.1	5.9e-18	70.27	hypothetical protein Csa_1G042955 [Cucumis sativus]	[more]
XP_020205234.1	4.7e-15	62.86	uncharacterized protein LOC109790487 [Cajanus cajan] >KYP36915.1 hypothetical pr...	[more]
NP_001342481.1	4.0e-14	56.96	uncharacterized protein LOC111138524 [Glycine max] >KHN45262.1 hypothetical prot...	[more]
XP_025979584.1	6.8e-14	59.49	uncharacterized protein LOC112997783 [Glycine max] >KHN43647.1 hypothetical prot...	[more]
XP_007152661.1	8.8e-14	56.96	hypothetical protein PHAVU_004G148400g [Phaseolus vulgaris] >ESW24655.1 hypothet...	[more]

BLAST of Carg06637 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67920.1	2.4e-05	47.27	unknown protein	[more]

BLAST of Carg06637 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06637 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQJ2\|A0A0A0LQJ2_CUCSA	3.9e-18	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1	[more]
tr\|A0A151R370\|A0A151R370_CAJCA	3.1e-15	62.86	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1	[more]
tr\|A0A0B2SM01\|A0A0B2SM01_GLYSO	2.6e-14	56.96	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1	[more]
tr\|A0A0B2SH40\|A0A0B2SH40_GLYSO	4.5e-14	59.49	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_027713 PE=4 SV=1	[more]
tr\|V7C5W2\|V7C5W2_PHAVU	5.8e-14	56.96	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G148400g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06637-RA	Carg06637-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 6..79
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 6..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06637	Cla018440	Watermelon (97103) v1	carwmB0493
Carg06637	MELO3C002147	Melon (DHL92) v3.5.1	carmeB0499
Carg06637	ClCG04G010470	Watermelon (Charleston Gray)	carwcgB0481
Carg06637	Cucsa.122070	Cucumber (Gy14) v1	carcgyB0568
Carg06637	CmaCh18G000820	Cucurbita maxima (Rimu)	carcmaB0692
Carg06637	CmaCh13G009780	Cucurbita maxima (Rimu)	carcmaB0690
Carg06637	Lsi02G002490	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06637	CsGy1G007210	Cucumber (Gy14) v2	carcgybB0500
Carg06637	MELO3C002147.2	Melon (DHL92) v3.6.1	carmedB0504
Carg06637	CsaV3_1G007310	Cucumber (Chinese Long) v3	carcucB0529
Carg06637	Cla97C04G077310	Watermelon (97103) v2	carwmbB0518
Carg06637	Bhi08G001091	Wax gourd	carwgoB0600

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06637	Silver-seed gourd	carcarB411
Carg06637	Cucurbita moschata (Rifu)	carcmoB0671
Carg06637	Cucurbita moschata (Rifu)	carcmoB0673
Carg06637	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06637	Cucurbita pepo (Zucchini)	carcpeB0696
Carg06637	Wild cucumber (PI 183967)	carcpiB0531
Carg06637	Cucumber (Chinese Long) v2	carcuB0523