CsGy1G007210 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G007210
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr1 : 4598251 .. 4598472 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

mRNA sequence

ATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Coding sequence (CDS)

ATGGAGATCGTTTCCGATATCCGAGAGACAAACAGTATGGAGAAGATTGAAGCTCCGTTTCCTGTTCACAGTCAGGTGAGAAAGATCAAAGAGGAATCCGACACGACCATCGATTGGCGACCTGGTCAACCGGAGATCAGACCGCCGACCGCCTCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Protein sequence

MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGISGRPISVGDS

Homology

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_1G042955 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: PQQ15457.1 (hypothetical protein Pyn_28850 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 20 FPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF---RQISRSPLGISGRPISVGDS 74
          FPVHSQVRKIK+ES+  IDW PG+PE+RP        RQISRSPLGIS RPISVGDS
Sbjct: 3  FPVHSQVRKIKQESEKIIDWLPGKPEMRPVLGEITMTRQISRSPLGISCRPISVGDS 59

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BLAST of CsGy1G007210 vs. NCBI nr
Match: NP_001342481.1 (uncharacterized protein LOC111138524 [Glycine max] >KHN45262.1 hypothetical protein glysoja_041948 [Glycine soja])

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 21 PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 74
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: XP_020205234.1 (uncharacterized protein LOC109790487 [Cajanus cajan] >KYP36915.1 hypothetical protein KK1_041930 [Cajanus cajan])

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 21 PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF---RQISRSPLGISGRPISVGDS 74
          P+HSQVRKIK+ES+  IDW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]

BLAST of CsGy1G007210 vs. NCBI nr
Match: PRQ15864.1 (hypothetical protein RchiOBHm_Chr7g0178031 [Rosa chinensis])

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 17 EAPFPVHSQVRKIKEESDTTIDWRPGQPEIRP-----PTASFRQISRSPLGISGRPISVG 74
          E   PVHSQVRKIK+ES+  ID  PG+PE+RP        + RQ+SRSPLGISGRPISVG
Sbjct: 19 EMGVPVHSQVRKIKQESEKVIDRLPGKPEMRPVLREITVTTTRQLSRSPLGISGRPISVG 78

[Close]

BLAST of CsGy1G007210 vs. TAIR10
Match: AT1G67920.1 (unknown protein)

HSP 1 Score: 40.4 bits (93), Expect = 5.5e-04
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 22 VHSQVRKIKEESDTTIDWRPGQPEIRPPTASF--RQISRSPLGISGRPISVGD 73
          +HSQV KIK+E +        QPE+R   +    RQ SRSPLG+  R ISVG+
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRRVLSEIKRRQRSRSPLGLGERSISVGN 67

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BLAST of CsGy1G007210 vs. TrEMBL
Match: tr|A0A0A0LQJ2|A0A0A0LQJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60
          MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

[Close]

BLAST of CsGy1G007210 vs. TrEMBL
Match: tr|A0A0B2SM01|A0A0B2SM01_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-11
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 21 PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVGDS 74
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG+S
Sbjct: 18 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVGES 71

[Close]

BLAST of CsGy1G007210 vs. TrEMBL
Match: tr|A0A151R370|A0A151R370_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-11
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 21 PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF---RQISRSPLGISGRPISVGDS 74
          P+HSQVRKIK+ES+  IDW PG+PE+RP        R ISRSPLGISG+PISVG+S
Sbjct: 15 PIHSQVRKIKQESEKIIDWSPGKPEVRPVLREIGRDRPISRSPLGISGQPISVGES 70

[Close]

BLAST of CsGy1G007210 vs. TrEMBL
Match: tr|A0A2P6P1Q5|A0A2P6P1Q5_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0178031 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.6e-11
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 17 EAPFPVHSQVRKIKEESDTTIDWRPGQPEIRP-----PTASFRQISRSPLGISGRPISVG 74
          E   PVHSQVRKIK+ES+  ID  PG+PE+RP        + RQ+SRSPLGISGRPISVG
Sbjct: 19 EMGVPVHSQVRKIKQESEKVIDRLPGKPEMRPVLREITVTTTRQLSRSPLGISGRPISVG 78

[Close]

BLAST of CsGy1G007210 vs. TrEMBL
Match: tr|A0A0R0J1T6|A0A0R0J1T6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G104300 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 21 PVHSQVRKIKEESDTTIDWRPGQPEIRPPTASF-RQISRSPLGISGRPISVG 72
          P+HSQV KI++ES+  +DW PG+PEIRP      RQISRSPLGISGRPISVG
Sbjct: 13 PIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGISGRPISVG 64

The following BLAST results are available for this feature:

BLAST of CsGy1G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64190.1	1.8e-32	100.00	hypothetical protein Csa_1G042955 [Cucumis sativus]	[more]
PQQ15457.1	3.4e-12	71.93	hypothetical protein Pyn_28850 [Prunus yedoensis var. nudiflora]	[more]
NP_001342481.1	2.9e-11	68.52	uncharacterized protein LOC111138524 [Glycine max] >KHN45262.1 hypothetical prot...	[more]
XP_020205234.1	6.5e-11	66.07	uncharacterized protein LOC109790487 [Cajanus cajan] >KYP36915.1 hypothetical pr...	[more]
PRQ15864.1	8.5e-11	64.52	hypothetical protein RchiOBHm_Chr7g0178031 [Rosa chinensis]	[more]

BLAST of CsGy1G007210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67920.1	5.5e-04	47.17	unknown protein	[more]

BLAST of CsGy1G007210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G007210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQJ2\|A0A0A0LQJ2_CUCSA	1.2e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1	[more]
tr\|A0A0B2SM01\|A0A0B2SM01_GLYSO	1.9e-11	68.52	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1	[more]
tr\|A0A151R370\|A0A151R370_CAJCA	4.3e-11	66.07	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_041930 PE=4 SV=1	[more]
tr\|A0A2P6P1Q5\|A0A2P6P1Q5_ROSCH	5.6e-11	64.52	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0178031 PE=4...	[more]
tr\|A0A0R0J1T6\|A0A0R0J1T6_SOYBN	9.5e-11	69.23	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G104300 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007210.1	CsGy1G007210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..73
None	No IPR available	PANTHER	PTHR34780	FAMILY NOT NAMED	coord: 10..73
None	No IPR available	PANTHER	PTHR34780:SF2	SUBFAMILY NOT NAMED	coord: 10..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G007210	Cla018440	Watermelon (97103) v1	cgybwmB064
CsGy1G007210	MELO3C002147	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G007210	ClCG04G010470	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G007210	CmaCh13G009780	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G007210	CmaCh18G000820	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G007210	Lsi02G002490	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G007210	MELO3C002147.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G007210	CsaV3_1G007310	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G007210	Cla97C04G077310	Watermelon (97103) v2	cgybwmbB053
CsGy1G007210	Bhi08G001091	Wax gourd	cgybwgoB025
CsGy1G007210	Carg06637	Silver-seed gourd	carcgybB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G007210	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G007210	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G007210	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G007210	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G007210	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G007210	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G007210	Silver-seed gourd	carcgybB0393