Lsi09G018010 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G018010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem II reaction center Psb28 protein
Location	chr09 : 26750835 .. 26751990 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGGTAACTCTATCACTTTCTCCATTGTATTCCCCCTTTTCCAACCCCTAATTCTCCCCCTCTTCAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

mRNA sequence

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Lsi09G018010 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 8.1e-54
Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 2   ATLQSLASTSPASPHLHH---PSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 61
           A +++LA  SP S        P+ +    PS + H    S+F G SL        +L R 
Sbjct: 3   AVMKALAVASPISARAQPRRCPAGSSGG-PSQSLH----SSFGGVSLQCRRTKPASLHR- 62

Query: 62  RCEAYGRPWNPILMV--QPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDS 121
                 RP   ++M+  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDS
Sbjct: 63  -----SRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDS 122

Query: 122 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 181
           SAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS 
Sbjct: 123 SAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQ 180

Query: 182 ANGLQFVKK 186
           ANGLQFVKK
Sbjct: 183 ANGLQFVKK 180

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BLAST of Lsi09G018010 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.9e-51
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 59  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 118

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 119 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 178

Query: 185 FVKK 186
           FVKK
Sbjct: 179 FVKK 182

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BLAST of Lsi09G018010 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-35
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

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BLAST of Lsi09G018010 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.4e-35
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

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BLAST of Lsi09G018010 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 77  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV-GDITGFYMIDEEGVI 136
           IQFIQG +E  +PDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 137 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

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BLAST of Lsi09G018010 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 9.5e-78
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 253

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 254 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 313

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 314 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 373

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 374 MQFVKK 376

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BLAST of Lsi09G018010 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 129/187 (68.98%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

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BLAST of Lsi09G018010 vs. TrEMBL
Match: B9GRD0_POPTR (Photosystem II reaction center Psb28 protein OS=Populus trichocarpa GN=POPTR_0002s25810g PE=3 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 129/185 (69.73%), Postives = 147/185 (79.46%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLA  SP + HL H + + +   S   ++SS+S F+G+SLCL       L RR+ 
Sbjct: 1   MATLQSLALASPVAQHLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLP-LIRRKL 60

Query: 61  EAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120
              G      +MV+P IQF+QG DEQTVPDVRLTKSRDGTNGMAIF FDQPSVFDSSAEV
Sbjct: 61  RTSGLV---TMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEV 120

Query: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180
           GDITGFYMIDEEG++QSVDVNAKF+NGKP  IEAKY+MRTPREWDRFMRFMERY+NANGL
Sbjct: 121 GDITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMERYANANGL 180

Query: 181 QFVKK 186
           QFVKK
Sbjct: 181 QFVKK 181

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BLAST of Lsi09G018010 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 129/187 (68.98%), Postives = 146/187 (78.07%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGIPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

[Close]

BLAST of Lsi09G018010 vs. TrEMBL
Match: A9PHJ0_POPTR (Photosystem II reaction center Psb28 protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 128/185 (69.19%), Postives = 147/185 (79.46%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLA  SP + HL H + + +   S   ++SS+S F+G+SLCL       L RR+ 
Sbjct: 1   MATLQSLALASPVAQHLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLP-LIRRKL 60

Query: 61  EAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120
              G      +MV+P IQF+QG DEQTVPDVRLTKSRDGTNGMAIF FDQPSVFDSSAEV
Sbjct: 61  RTSGLV---TMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEV 120

Query: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180
           GDITGFYMIDEEG++QSVDVNAKF+NGKP  IEAKY+MRTPREWDRFMRFME+Y+NANGL
Sbjct: 121 GDITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMEKYANANGL 180

Query: 181 QFVKK 186
           QFVKK
Sbjct: 181 QFVKK 181

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BLAST of Lsi09G018010 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-52
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 185 FVKK 186
           FVKK
Sbjct: 194 FVKK 197

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 1.7e-80
Identity = 161/186 (86.56%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE
Sbjct: 61  YRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180

Query: 181 LQFVKK 186
           LQFVKK
Sbjct: 181 LQFVKK 183

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 103

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 104 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 163

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 164 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 223

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 224 MQFVKK 226

[Close]

BLAST of Lsi09G018010 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 61  YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 121 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 181 MQFVKK 183

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BLAST of Lsi09G018010 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 253

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 254 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 313

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 314 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 373

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 374 MQFVKK 376

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BLAST of Lsi09G018010 vs. NCBI nr
Match: gi|728813701|gb|KHG01299.1| (Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum])

HSP 1 Score: 248.8 bits (634), Expect = 7.3e-63
Identity = 129/187 (68.98%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

The following BLAST results are available for this feature:

BLAST of Lsi09G018010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB28_ORYSJ	8.1e-54	63.49	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
PSB28_ARATH	4.9e-51	75.00	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
PSB28_ODOSI	3.8e-35	59.29	Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3...	[more]
PSB28_PHATC	8.4e-35	57.52	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
PSB28_GUITH	5.4e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 S...	[more]

BLAST of Lsi09G018010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C2_CUCSA	9.5e-78	83.33	Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ...	[more]
A0A0B0MPB9_GOSAR	5.1e-63	68.98	Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079...	[more]
B9GRD0_POPTR	1.1e-62	69.73	Photosystem II reaction center Psb28 protein OS=Populus trichocarpa GN=POPTR_000...	[more]
A0A0D2QS78_GOSRA	1.1e-62	68.98	Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G...	[more]
A9PHJ0_POPTR	2.5e-62	69.19	Photosystem II reaction center Psb28 protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of Lsi09G018010 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28660.2	2.8e-52	75.00	photosystem II reaction center PSB28 protein	[more]

BLAST of Lsi09G018010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120023\|ref\|XP_008459971.1\|	1.7e-80	86.56	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
gi\|778711592\|ref\|XP_011656764.1\|	1.4e-77	83.33	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X...	[more]
gi\|778711596\|ref\|XP_011656765.1\|	1.4e-77	83.33	PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati...	[more]
gi\|700191166\|gb\|KGN46370.1\|	1.4e-77	83.33	hypothetical protein Csa_6G087980 [Cucumis sativus]	[more]
gi\|728813701\|gb\|KHG01299.1\|	7.3e-63	68.98	Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR005610	PSII_Psb28_class-1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018010.1	Lsi09G018010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 78..177 score: 4.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 74..183 score: 30
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 77..182 score: 2.1
IPR005610	Photosystem II Psb28, class 1	TIGRFAMs	TIGR03047	TIGR03047	coord: 77..183 score: 2.5
None	No IPR available	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 2..185 score: 2.7E
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 2..185 score: 2.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G018010	Csa6G087980	Cucumber (Chinese Long) v2	culsiB402
Lsi09G018010	CSPI06G06970	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G018010	Cucsa.348850	Cucumber (Gy14) v1	cgylsiB562
Lsi09G018010	CmaCh17G013700	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G018010	CmaCh08G000440	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G018010	CmoCh17G013240	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G018010	CmoCh08G000440	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G018010	Cla007062	Watermelon (97103) v1	lsiwmB041
Lsi09G018010	MELO3C022393	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G018010	ClCG06G001400	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G018010	MELO3C022393.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G018010	Bhi12G002083	Wax gourd	lsiwgoB021
Lsi09G018010	Cp4.1LG17g09650	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G018010	Cp4.1LG12g10160	Cucurbita pepo (Zucchini)	cpelsiB103
Lsi09G018010	CsGy6G006990	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G018010	Carg11538	Silver-seed gourd	carlsiB011
Lsi09G018010	Carg03787	Silver-seed gourd	carlsiB890

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G018010	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G018010	Watermelon (97103) v2	lsiwmbB026