Cp4.1LG12g10160 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG12g10160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem II reaction center Psb28 protein
Location	Cp4.1LG12 : 9601489 .. 9603382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATATTTAAAAAAAAAAAAAAAAAAGATTTATAGGCACAAAATTAATAGTTAGTAGAGAGAGTAAGGGTGGTGAGGAAGGGATTGAAATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGGTAACTCTATCACTCTCTGCATTCCCCTTTCCCCAACCCTAATTCTCATCATCATCACCAAACTCACTCTTCTTCAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCGCCTAGTACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGCCCAATTTTGTTCTGCGTTGAATCACGATCAACACTGTGTTGATGCTGATGGATGAAGAATTCGTTGGAATCTATGCCTTCTTCTTCAACAAACCTAAGTCTTCAACTTTCCAACATTCCATTTCTTACTCATTCAACTCATTCAAAGTATACAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATCTTGATTTTGGAACTTCGGATTTTATGCTACTTCATGTTTCAAAATCGGTGTAAAAATGGGACAAATTGGAGAAACATAAGAGTACCCATATGATTCTTTGTTTCAAAATTGGATCTTTCTCAATTGAAGGTAATTCGAGTATTTTTGAAACAATGTAGTATATACAACGGTAACGATATTTTTAGAAGCATATAGACTAATAAAGCTATAAGAGTAACATAAAAGACAGTAAAGATAGCAATGAGATTCTAACCACCGTACTATATAGCCGATTACTACTTCATAGCTGGGGAATTTGATGAAGTGATGTGTTAGTTTGGTTCCAAAGAAAAACAAAACTCCTGGGCTTCTTCCCATTTCTGTTCTTTTCTTTTTCCTGAAAAAACACATTTTATGATCATAGTATTATGCTGTAGCCAAGCATCCCAGCCTTTATTAATTACAACACCAAATAAACTGTGAATTCTAAACCATGAATCAAGAAGATTAGGATACACGAGGGTTGAATTCAAAAACATTCTCCATTTTATTTGTTGATCAAATGGAGACATAAACCAGGCGGTTCTCAAACCTTTTCAACTAAGTTAATACAAATTATCTCGAGAAGCCTGGAAAAGAATCAGGATCGACTTTTTCACTGACTGTCGAACCGAATTGCGGGCCACCTTTACGGTACGATATAAGAAACTCGACAGGATATCCCTTCAACTTATGTGGTGCAATCCCAAG

mRNA sequence

AGATATTTAAAAAAAAAAAAAAAAAAGATTTATAGGCACAAAATTAATAGTTAGTAGAGAGAGTAAGGGTGGTGAGGAAGGGATTGAAATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCGCCTAGTACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGCCCAATTTTGTTCTGCGTTGAATCACGATCAACACTGTGTTGATGCTGATGGATGAAGAATTCGTTGGAATCTATGCCTTCTTCTTCAACAAACCTAAGTCTTCAACTTTCCAACATTCCATTTCTTACTCATTCAACTCATTCAAAGTATACAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATCTTGATTTTGGAACTTCGGATTTTATGCTACTTCATGTTTCAAAATCGGTGTAAAAATGGGACAAATTGGAGAAACATAAGAGTACCCATATGATTCTTTGTTTCAAAATTGGATCTTTCTCAATTGAAGGTAATTCGAGTATTTTTGAAACAATGTAGTATATACAACGGTAACGATATTTTTAGAAGCATATAGACTAATAAAGCTATAAGAGTAACATAAAAGACAGTAAAGATAGCAATGAGATTCTAACCACCGTACTATATAGCCGATTACTACTTCATAGCTGGGGAATTTGATGAAGTGATGTGTTAGTTTGGTTCCAAAGAAAAACAAAACTCCTGGGCTTCTTCCCATTTCTGTTCTTTTCTTTTTCCTGAAAAAACACATTTTATGATCATAGTATTATGCTGTAGCCAAGCATCCCAGCCTTTATTAATTACAACACCAAATAAACTGTGAATTCTAAACCATGAATCAAGAAGATTAGGATACACGAGGGTTGAATTCAAAAACATTCTCCATTTTATTTGTTGATCAAATGGAGACATAAACCAGGCGGTTCTCAAACCTTTTCAACTAAGTTAATACAAATTATCTCGAGAAGCCTGGAAAAGAATCAGGATCGACTTTTTCACTGACTGTCGAACCGAATTGCGGGCCACCTTTACGGTACGATATAAGAAACTCGACAGGATATCCCTTCAACTTATGTGGTGCAATCCCAAG

Coding sequence (CDS)

ATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA

Protein sequence

MEVNGSRGYTPYQSSHHTILPFLLPFISLSLSLSLSAGCVSKSMATLQSLASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Cp4.1LG12g10160 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-53
Identity = 114/182 (62.64%), Postives = 136/182 (74.73%), Query Frame = 1


Query: 50  LASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGR 109
           + + +++SP    +      A +S     S+ S+F G SL     K  ++ R       R
Sbjct: 5   MKALAVASPISARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRRTKPASLHR------SR 64

Query: 110 PSNTILMVL--PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDI 169
           PS  ++M+   P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF F+QPSVFDSS E+GDI
Sbjct: 65  PSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDI 124

Query: 170 TGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFV 229
           TGFYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS ANGLQFV
Sbjct: 125 TGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFV 180

[Close]

BLAST of Cp4.1LG12g10160 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-49
Identity = 104/186 (55.91%), Postives = 137/186 (73.66%), Query Frame = 1


Query: 44  MATLQSLASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103
           MA ++S+ S + S  H   +   +    +S  +     S+F G  +++   + Q  +R  
Sbjct: 1   MACVRSIGSLT-SVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTA 60

Query: 104 CQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGE 163
            +P  +P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F+QPSVFDSSGE
Sbjct: 61  LRPM-KPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 164 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 223
           VG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 224 LQFVKK 230
           LQFVKK
Sbjct: 181 LQFVKK 182

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BLAST of Cp4.1LG12g10160 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.9e-34
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 120 KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 179
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F+ P++ D S+ + G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 180 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 229
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Cp4.1LG12g10160 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.8e-34
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 120 KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 179
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F+ P++ D ++ + G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 180 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 229
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

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BLAST of Cp4.1LG12g10160 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 121 IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEV-GDITGFYMIDEEGVI 180
           IQFIQG +E  +PDVRLT+SRDG+ G A F+F  P V ++   V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 181 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 229
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Cp4.1LG12g10160 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.6e-74
Identity = 154/188 (81.91%), Postives = 164/188 (87.23%), Query Frame = 1


Query: 43  SMATLQSLAST-SLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 102
           SMA+LQSLAST S SSPHL H SST  K   S  LHSS FS+FHGRSL++S  KC T+TR
Sbjct: 193 SMASLQSLASTTSPSSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTR 252

Query: 103 RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 162
           R  +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS
Sbjct: 253 RTYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 312

Query: 163 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 222
            EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 313 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 372

Query: 223 NGLQFVKK 230
           NG+QFVKK
Sbjct: 373 NGMQFVKK 376

[Close]

BLAST of Cp4.1LG12g10160 vs. TrEMBL
Match: M5W031_PRUPE (Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa012196mg PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 6.5e-60
Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 44  MATLQSLASTS-----LSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQT 103
           MATLQSLA +S     L  P LH           S  +H S  S F+G+SL+VS  + Q 
Sbjct: 1   MATLQSLAFSSPVSHCLQQPRLH-------SGLLSWTVHRSAKSTFNGQSLHVS--RPQW 60

Query: 104 VTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVF 163
              RRC    R  +  +MV PKIQFIQGTDEQT+PDVRLTKS+DGTNG+AIFKFEQPSVF
Sbjct: 61  APIRRCTQASR--SITMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFKFEQPSVF 120

Query: 164 DSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERY 223
           DSSGE GDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY MRTPR+WDRFMRFMERY
Sbjct: 121 DSSGEFGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYTMRTPRDWDRFMRFMERY 180

Query: 224 SNANGLQFVKK 230
           +N NGLQF+KK
Sbjct: 181 ANDNGLQFIKK 180

[Close]

BLAST of Cp4.1LG12g10160 vs. TrEMBL
Match: W9QPM4_9ROSA (Photosystem II reaction center Psb28 protein OS=Morus notabilis GN=L484_015887 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 130/189 (68.78%), Postives = 144/189 (76.19%), Query Frame = 1


Query: 44  MATLQSLASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRR 103
           MATLQSLA +S  S HLH   S + K   S  +  S  S F+G+ L       Q   RR 
Sbjct: 1   MATLQSLAFSSPLSHHLHQPRSFSGKV--SLTIRGSSHSTFNGQCL-------QLPRRRW 60

Query: 104 CQPHGR---PSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDS 163
            QP      P   I MV P IQFIQGTDEQT+PDVRLT+SRDGTNGMAIFKF+QPSVFDS
Sbjct: 61  SQPRPNAQVPGFVIKMVKPTIQFIQGTDEQTIPDVRLTQSRDGTNGMAIFKFDQPSVFDS 120

Query: 164 SGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 223
           SGEVGDITGFYMID+EGV+QSVDVNAKF+NGKPAGIEAKY+MR+PREWDRFMRFMERYSN
Sbjct: 121 SGEVGDITGFYMIDDEGVLQSVDVNAKFVNGKPAGIEAKYIMRSPREWDRFMRFMERYSN 180

Query: 224 ANGLQFVKK 230
            NGLQF+KK
Sbjct: 181 ENGLQFIKK 180

[Close]

BLAST of Cp4.1LG12g10160 vs. TrEMBL
Match: A0A059A1X0_EUCGR (Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K01424 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.5e-59
Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 1


Query: 44  MATLQSLASTSLSSP--HLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 103
           MA+LQSL   S SSP  + H         F S+ LH S  S FHG++L++   +     R
Sbjct: 1   MASLQSL---SFSSPVSYYHQQQPRTHSGFISSPLHRSASSTFHGQTLHLPHTQ-----R 60

Query: 104 RRCQPHGRPSN-TILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDS 163
              + +GR S   I+MV P IQFIQGTDEQT+PDVRLTKSRDGTNG+A F+FEQPSVFD+
Sbjct: 61  ASLKVNGRTSRPVIMMVKPTIQFIQGTDEQTIPDVRLTKSRDGTNGVATFRFEQPSVFDA 120

Query: 164 SGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 223
           SG+VGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MR+PREWDRFMRFMERYSN
Sbjct: 121 SGDVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRSPREWDRFMRFMERYSN 180

Query: 224 ANGLQFVKK 230
            NGLQF+KK
Sbjct: 181 QNGLQFIKK 181

[Close]

BLAST of Cp4.1LG12g10160 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.2e-59
Identity = 127/188 (67.55%), Postives = 143/188 (76.06%), Query Frame = 1


Query: 44  MATLQSLASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTV--TR 103
           MATLQSLA  S  S H   +   +     S   H S  S F+G+SL V+  +        
Sbjct: 1   MATLQSLALASPVS-HSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNS 60

Query: 104 RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 163
           +RC P       ++MV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F+QPSVFDSS
Sbjct: 61  KRCSP------IVMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120

Query: 164 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 223
            EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN 
Sbjct: 121 SEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNE 180

Query: 224 NGLQFVKK 230
           NGLQF+KK
Sbjct: 181 NGLQFIKK 181

[Close]

BLAST of Cp4.1LG12g10160 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-50
Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = 1


Query: 46  TLQSLASTSLSSPHLHHSSSTNTKAFASA-RLHSSVFSAFHGRSLNVSGGKCQTVTRRRC 105
           ++ SL S + S  ++  S +     FA   R    V S+     +  S      V+  R 
Sbjct: 6   SIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPVSLPRA 65

Query: 106 QPHGR-------PSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSV 165
           QP  R       P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F+QPSV
Sbjct: 66  QPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSV 125

Query: 166 FDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMER 225
           FDSSGEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMER
Sbjct: 126 FDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMER 185

Query: 226 YSNANGLQFVKK 230
           YS+ NGLQFVKK
Sbjct: 186 YSDQNGLQFVKK 197

[Close]

BLAST of Cp4.1LG12g10160 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 5.4e-76
Identity = 170/234 (72.65%), Postives = 184/234 (78.63%), Query Frame = 1


Query: 3   VNGSRGYTPYQS---SHHTILPFLLPFISLSLSLSLSAGCV---SKSMATLQSLAST-SL 62
           +NG   YT   S   ++HTILPF     S S S S    C    + SMA+LQSLAST S 
Sbjct: 1   MNGCGDYTHLSSIFFTNHTILPFS----SSSSSSSSFFPCFQFSTTSMASLQSLASTTSP 60

Query: 63  SSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTIL 122
           SSPHL H SST  K   S  LHSS FS+FHGRSL++S  KC T+TRR  +   R  N IL
Sbjct: 61  SSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQ--RSWNPIL 120

Query: 123 MVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDE 182
           MVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS EVGDITGFYMIDE
Sbjct: 121 MVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDE 180

Query: 183 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 230
           EG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVKK
Sbjct: 181 EGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK 226

[Close]

BLAST of Cp4.1LG12g10160 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 6.6e-74
Identity = 154/188 (81.91%), Postives = 164/188 (87.23%), Query Frame = 1


Query: 43  SMATLQSLAST-SLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 102
           SMA+LQSLAST S SSPHL H SST  K   S  LHSS FS+FHGRSL++S  KC T+TR
Sbjct: 193 SMASLQSLASTTSPSSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTR 252

Query: 103 RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 162
           R  +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS
Sbjct: 253 RTYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 312

Query: 163 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 222
            EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 313 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 372

Query: 223 NGLQFVKK 230
           NG+QFVKK
Sbjct: 373 NGMQFVKK 376

[Close]

BLAST of Cp4.1LG12g10160 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 8.7e-74
Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 1


Query: 44  MATLQSLAST-SLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103
           MA+LQSLAST S SSPHL H SST  +   S  LHSS FS+FHGRSL++S  KC T+TRR
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60

Query: 104 RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163
             +   RP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS 
Sbjct: 61  TYRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120

Query: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 224 GLQFVKK 230
           GLQFVKK
Sbjct: 181 GLQFVKK 183

[Close]

BLAST of Cp4.1LG12g10160 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73
Identity = 153/187 (81.82%), Postives = 163/187 (87.17%), Query Frame = 1


Query: 44  MATLQSLAST-SLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103
           MA+LQSLAST S SSPHL H SST  K   S  LHSS FS+FHGRSL++S  KC T+TRR
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60

Query: 104 RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163
             +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS 
Sbjct: 61  TYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 120

Query: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 224 GLQFVKK 230
           G+QFVKK
Sbjct: 181 GMQFVKK 183

[Close]

BLAST of Cp4.1LG12g10160 vs. NCBI nr
Match: gi|645259914|ref|XP_008235587.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Prunus mume])

HSP 1 Score: 238.8 bits (608), Expect = 9.3e-60
Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 1


Query: 44  MATLQSLASTS-----LSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQT 103
           MATLQSLA +S     L  P LH           S  +H S  S F+G+SL+VS  + Q 
Sbjct: 1   MATLQSLAFSSPVSHCLQQPRLH-------SGLLSWAVHRSAKSTFNGQSLHVS--RPQW 60

Query: 104 VTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVF 163
              RRC    R  +  +MV PKIQFIQGTDEQT+PDVRLTKS+DGTNG+AIFKFEQPSVF
Sbjct: 61  APIRRCTQASR--SITMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFKFEQPSVF 120

Query: 164 DSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERY 223
           DSSGE GDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY MRTPR+WDRFMRFMERY
Sbjct: 121 DSSGEFGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYTMRTPRDWDRFMRFMERY 180

Query: 224 SNANGLQFVKK 230
           +N NGLQF+KK
Sbjct: 181 ANDNGLQFIKK 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG12g10160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB28_ORYSJ	2.9e-53	62.64	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
PSB28_ARATH	2.5e-49	55.91	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
PSB28_ODOSI	3.9e-34	59.09	Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3...	[more]
PSB28_PHATC	8.8e-34	57.27	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
PSB28_GUITH	2.0e-33	60.55	Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 S...	[more]

BLAST of Cp4.1LG12g10160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C2_CUCSA	4.6e-74	81.91	Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ...	[more]
M5W031_PRUPE	6.5e-60	68.06	Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa01219...	[more]
W9QPM4_9ROSA	1.4e-59	68.78	Photosystem II reaction center Psb28 protein OS=Morus notabilis GN=L484_015887 P...	[more]
A0A059A1X0_EUCGR	2.5e-59	66.67	Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K0...	[more]
A0A0B0MPB9_GOSAR	3.2e-59	67.55	Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079...	[more]

BLAST of Cp4.1LG12g10160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28660.2	1.4e-50	55.73	photosystem II reaction center PSB28 protein	[more]

BLAST of Cp4.1LG12g10160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711592\|ref\|XP_011656764.1\|	5.4e-76	72.65	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X...	[more]
gi\|700191166\|gb\|KGN46370.1\|	6.6e-74	81.91	hypothetical protein Csa_6G087980 [Cucumis sativus]	[more]
gi\|659120023\|ref\|XP_008459971.1\|	8.7e-74	82.35	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
gi\|778711596\|ref\|XP_011656765.1\|	1.5e-73	81.82	PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati...	[more]
gi\|645259914\|ref\|XP_008235587.1\|	9.3e-60	68.06	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Prunus m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR005610	PSII_Psb28_class-1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG12g10160.1	Cp4.1LG12g10160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 122..221 score: 7.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 118..227 score: 30
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 121..226 score: 3.9
IPR005610	Photosystem II Psb28, class 1	TIGRFAMs	TIGR03047	TIGR03047	coord: 121..227 score: 8.1
None	No IPR available	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 45..229 score: 2.5E
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 45..229 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG12g10160	Cucsa.348850	Cucumber (Gy14) v1	cgycpeB0907
Cp4.1LG12g10160	CmaCh17G013700	Cucurbita maxima (Rimu)	cmacpeB371
Cp4.1LG12g10160	CmaCh08G000440	Cucurbita maxima (Rimu)	cmacpeB905
Cp4.1LG12g10160	CmoCh08G000440	Cucurbita moschata (Rifu)	cmocpeB841
Cp4.1LG12g10160	CmoCh17G013240	Cucurbita moschata (Rifu)	cmocpeB335
Cp4.1LG12g10160	Cla007062	Watermelon (97103) v1	cpewmB156
Cp4.1LG12g10160	Csa6G087980	Cucumber (Chinese Long) v2	cpecuB142
Cp4.1LG12g10160	MELO3C022393	Melon (DHL92) v3.5.1	cpemeB114
Cp4.1LG12g10160	ClCG06G001400	Watermelon (Charleston Gray)	cpewcgB140
Cp4.1LG12g10160	CSPI06G06970	Wild cucumber (PI 183967)	cpecpiB144
Cp4.1LG12g10160	Lsi09G018010	Bottle gourd (USVL1VR-Ls)	cpelsiB103
Cp4.1LG12g10160	MELO3C022393.2	Melon (DHL92) v3.6.1	cpemedB140
Cp4.1LG12g10160	Bhi12G002083	Wax gourd	cpewgoB0175
Cp4.1LG12g10160	CsGy6G006990	Cucumber (Gy14) v2	cgybcpeB722
Cp4.1LG12g10160	Carg11538	Silver-seed gourd	carcpeB0018
Cp4.1LG12g10160	Carg03787	Silver-seed gourd	carcpeB1355

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG12g10160	Cp4.1LG17g09650	Cucurbita pepo (Zucchini)	cpecpeB170

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG12g10160	Cucumber (Chinese Long) v3	cpecucB0166