Cp4.1LG12g10160.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGATATTTAAAAAAAAAAAAAAAAAAGATTTATAGGCACAAAATTAATAGTTAGTAGAGAGAGTAAGGGTGGTGAGGAAGGGATTGAAATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGGTAACTCTATCACTCTCTGCATTCCCCTTTCCCCAACCCTAATTCTCATCATCATCACCAAACTCACTCTTCTTCAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCGCCTAGTACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGCCCAATTTTGTTCTGCGTTGAATCACGATCAACACTGTGTTGATGCTGATGGATGAAGAATTCGTTGGAATCTATGCCTTCTTCTTCAACAAACCTAAGTCTTCAACTTTCCAACATTCCATTTCTTACTCATTCAACTCATTCAAAGTATACAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATCTTGATTTTGGAACTTCGGATTTTATGCTACTTCATGTTTCAAAATCGGTGTAAAAATGGGACAAATTGGAGAAACATAAGAGTACCCATATGATTCTTTGTTTCAAAATTGGATCTTTCTCAATTGAAGGTAATTCGAGTATTTTTGAAACAATGTAGTATATACAACGGTAACGATATTTTTAGAAGCATATAGACTAATAAAGCTATAAGAGTAACATAAAAGACAGTAAAGATAGCAATGAGATTCTAACCACCGTACTATATAGCCGATTACTACTTCATAGCTGGGGAATTTGATGAAGTGATGTGTTAGTTTGGTTCCAAAGAAAAACAAAACTCCTGGGCTTCTTCCCATTTCTGTTCTTTTCTTTTTCCTGAAAAAACACATTTTATGATCATAGTATTATGCTGTAGCCAAGCATCCCAGCCTTTATTAATTACAACACCAAATAAACTGTGAATTCTAAACCATGAATCAAGAAGATTAGGATACACGAGGGTTGAATTCAAAAACATTCTCCATTTTATTTGTTGATCAAATGGAGACATAAACCAGGCGGTTCTCAAACCTTTTCAACTAAGTTAATACAAATTATCTCGAGAAGCCTGGAAAAGAATCAGGATCGACTTTTTCACTGACTGTCGAACCGAATTGCGGGCCACCTTTACGGTACGATATAAGAAACTCGACAGGATATCCCTTCAACTTATGTGGTGCAATCCCAAG AGATATTTAAAAAAAAAAAAAAAAAAGATTTATAGGCACAAAATTAATAGTTAGTAGAGAGAGTAAGGGTGGTGAGGAAGGGATTGAAATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAAATCGCCTAGTACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGCCCAATTTTGTTCTGCGTTGAATCACGATCAACACTGTGTTGATGCTGATGGATGAAGAATTCGTTGGAATCTATGCCTTCTTCTTCAACAAACCTAAGTCTTCAACTTTCCAACATTCCATTTCTTACTCATTCAACTCATTCAAAGTATACAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATCTTGATTTTGGAACTTCGGATTTTATGCTACTTCATGTTTCAAAATCGGTGTAAAAATGGGACAAATTGGAGAAACATAAGAGTACCCATATGATTCTTTGTTTCAAAATTGGATCTTTCTCAATTGAAGGTAATTCGAGTATTTTTGAAACAATGTAGTATATACAACGGTAACGATATTTTTAGAAGCATATAGACTAATAAAGCTATAAGAGTAACATAAAAGACAGTAAAGATAGCAATGAGATTCTAACCACCGTACTATATAGCCGATTACTACTTCATAGCTGGGGAATTTGATGAAGTGATGTGTTAGTTTGGTTCCAAAGAAAAACAAAACTCCTGGGCTTCTTCCCATTTCTGTTCTTTTCTTTTTCCTGAAAAAACACATTTTATGATCATAGTATTATGCTGTAGCCAAGCATCCCAGCCTTTATTAATTACAACACCAAATAAACTGTGAATTCTAAACCATGAATCAAGAAGATTAGGATACACGAGGGTTGAATTCAAAAACATTCTCCATTTTATTTGTTGATCAAATGGAGACATAAACCAGGCGGTTCTCAAACCTTTTCAACTAAGTTAATACAAATTATCTCGAGAAGCCTGGAAAAGAATCAGGATCGACTTTTTCACTGACTGTCGAACCGAATTGCGGGCCACCTTTACGGTACGATATAAGAAACTCGACAGGATATCCCTTCAACTTATGTGGTGCAATCCCAAG ATGGAAGTGAATGGCTCTCGTGGTTACACACCTTACCAATCTTCACACCACACCATTCTCCCCTTCCTTTTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATTCTTCATCCACCAACACCAAAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACCAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA MEVNGSRGYTPYQSSHHTILPFLLPFISLSLSLSLSAGCVSKSMATLQSLASTSLSSPHLHHSSSTNTKAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK
BLAST of Cp4.1LG12g10160.1 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2) HSP 1 Score: 209.9 bits (533), Expect = 2.9e-53 Identity = 114/182 (62.64%), Postives = 136/182 (74.73%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 2.5e-49 Identity = 104/186 (55.91%), Postives = 137/186 (73.66%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 3.9e-34 Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 8.8e-34 Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33 Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 4.6e-74 Identity = 154/188 (81.91%), Postives = 164/188 (87.23%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TrEMBL
Match: M5W031_PRUPE (Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa012196mg PE=3 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 6.5e-60 Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TrEMBL
Match: W9QPM4_9ROSA (Photosystem II reaction center Psb28 protein OS=Morus notabilis GN=L484_015887 PE=3 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59 Identity = 130/189 (68.78%), Postives = 144/189 (76.19%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TrEMBL
Match: A0A059A1X0_EUCGR (Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K01424 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 2.5e-59 Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 3.2e-59 Identity = 127/188 (67.55%), Postives = 143/188 (76.06%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein) HSP 1 Score: 196.8 bits (499), Expect = 1.4e-50 Identity = 107/192 (55.73%), Postives = 133/192 (69.27%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 292.7 bits (748), Expect = 5.4e-76 Identity = 170/234 (72.65%), Postives = 184/234 (78.63%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus]) HSP 1 Score: 285.8 bits (730), Expect = 6.6e-74 Identity = 154/188 (81.91%), Postives = 164/188 (87.23%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 8.7e-74 Identity = 154/187 (82.35%), Postives = 163/187 (87.17%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus]) HSP 1 Score: 284.6 bits (727), Expect = 1.5e-73 Identity = 153/187 (81.82%), Postives = 163/187 (87.17%), Query Frame = 1
BLAST of Cp4.1LG12g10160.1 vs. NCBI nr
Match: gi|645259914|ref|XP_008235587.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Prunus mume]) HSP 1 Score: 238.8 bits (608), Expect = 9.3e-60 Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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