CSPI06G06970 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAGTATAGTATTGACATTGATTTAATTTTGTATGTTTAGAAATGAAAGTGAAAAAGACTACAATTCTCCCTTTTGCAAAAAGTGAATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGAAATCAGGTTTTTTCTTTTGCACAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTGATTATGTCTGATGGATGAAGATTTAATTGAAGCTTTGTTCTATGTTCTTTCTATCCCCCTAAAGGGAATTTGTAATAACAAACAAAAGATTGTGAAAACAAAACAAACTCTGTACC ATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGA ATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGA
BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2) HSP 1 Score: 211.8 bits (538), Expect = 7.7e-54 Identity = 122/188 (64.89%), Postives = 139/188 (73.94%), Query Frame = 1
BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 4.4e-49 Identity = 109/186 (58.60%), Postives = 133/186 (71.51%), Query Frame = 1
BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 8.0e-35 Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 1
BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34 Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 1
BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 5.2e-34 Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1
BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1) HSP 1 Score: 395.6 bits (1015), Expect = 4.2e-107 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 7.7e-61 Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1
BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60 Identity = 127/184 (69.02%), Postives = 148/184 (80.43%), Query Frame = 1
BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A059A1X0_EUCGR (Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K01424 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59 Identity = 126/183 (68.85%), Postives = 147/183 (80.33%), Query Frame = 1
BLAST of CSPI06G06970 vs. TrEMBL
Match: M5W031_PRUPE (Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa012196mg PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59 Identity = 128/183 (69.95%), Postives = 148/183 (80.87%), Query Frame = 1
BLAST of CSPI06G06970 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein) HSP 1 Score: 196.8 bits (499), Expect = 1.4e-50 Identity = 99/149 (66.44%), Postives = 118/149 (79.19%), Query Frame = 1
BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 436.4 bits (1121), Expect = 3.1e-119 Identity = 224/229 (97.82%), Postives = 226/229 (98.69%), Query Frame = 1
BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus]) HSP 1 Score: 395.6 bits (1015), Expect = 6.0e-107 Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus]) HSP 1 Score: 361.3 bits (926), Expect = 1.2e-96 Identity = 181/183 (98.91%), Postives = 183/183 (100.00%), Query Frame = 1
BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo]) HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93 Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 1
BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|728813701|gb|KHG01299.1| (Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum]) HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60 Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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