Cp4.1LG17g09650 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g09650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosystem II reaction center Psb28 protein
LocationCp4.1LG17 : 7337728 .. 7343704 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACAACCGGCTGTGAAGATCATTGGTTGAAATTTGAAATGGGAATTGCTGGAGAAAAGGTGCTGATTCTTTTCTGTTTTTCCATTTTTCTATTTTTCTATTGATCATCGATTGATTGGAGAAGTCCAGACTAATCGGACAAACCTTTTTTCTTCGCTGCAGTTTCCCTCCATAGCAACATAAATACTTCTTCTCCTTCATCACAGACATTTCTTGAATGAAATCAATCCCTCACTTTTTGCTATCTCATTTTCCCGAATGCGCGATCGATGTCGCGGATGCCGCCGACTTAGCTGATGTAAAGGCCATTCGCCCCAAATTGGTTTCCATCTTCAAACGCTCTCTCCAATCCCACAATTTTCCAGGTGCGGCGTCCTATTGGTTGTGATGTCTTTTTTCTATTATTATTTCTGGGTTTTATTTACGAACATGGAATTGATCACCCGACAATTTTAGGATGGGATGTTTCTGGGTTCTGTAATTCTTCTTGAATATTGTGATTGTGTTAGAGGCTTAGTTGCCGCCTTTTACTTCGTCTGGTAGTGGGTCTTCCTTTTATTCGTTTCTCTTTTCTTTTTGTTAAAGATAGTGCCATGACAGTCAAGTTACTTTCCTATGTTCTCTCATTACCAAAATTTTCCTTTTATAAGCCATTGTCATTGAAATCAAATATCGGTTTTCCAGAAGGAAGCGGTGGAAGATGATGATCTCTGATCAAGGGTTGCTTGCACGAGTTCCATAAATCCATCGGAAGAAGGGGTGAATAAATCCTGGGGCTGCCAAGCTGTGCCGTTTGGGCTTATTACTGCTTCTTGTGGTTTAGCTTTGAGTGCTTTAGATGACCTCGCCATTTATCATAGCTGTAGCAGGTATGTCTGACTTGTTAGAGCTTGCCAAATTCTCTATGAACTATAGTTCAATTAAATGCAAGCCTGAAGTTTGCCTAATAAACTGATGCATCTTGGAATTGTTTGTTATGCATTGTTTTTTGTTTCCTTGTTTCACATATTTGTGCTTCGAAGTTCAAGGGAACTCTCCCCATCACCATTTCTGTTGTATTCATAGTCATCTAAATAAAAAAGGCAAGATGGTAGTGAAGTTGTTCAGTCTTGGTTGTTCTCAATCTTGAAAATTGGCAATGTTTTTACGTTACCAAGGCTTGTCTTCTCTTCAGATGAGCTAATCAATTTTATCAGATCATGTCTCGTATTAGTATGCAGTGACATTTACATTATCGTTACAGCAAGAGTTCATTTGTCAATCTTTTTTTATGATGAGGGGACAAAAGAATGTAAGGTTTTTTTAGGAAGGGAGAATGGGAGGTTGTTTTCCCTGTTTAACTTTTCCTTATTCATCAATGGTTTAACCCAGATGACGTCCAGATGCAACTTGTTCCTCTGGAGCAATACCCACGACCTTTTGCCTTCGGATGAGCCCTACCATTTCTCGTTGCCTTCCCCAGTTCCTGAATGGCCTCAAGGTATATGATATTATCAAATGAATTTTGAGTTATAAGCTATTGCCTTTTGTCCATTTTTTGTTGTATTATTTCCCTTGATACTTTTCATCGAACTTGAGGCAATTCTTTGTTTGTTTCTGACTCAACTTGTGGCTTTAGTTGATAAGGGGTATTGGATAAGCTAGTCGATCTCTCCTTTTCCCCAATAAACTACTTGGGTTTGTTGTAGTGTAAGATTTTAACGTTGAAGCAATAGAGATATAAAGTTGAGTTCTTGTTGTTGATAACTATGAAGGGAAAAATAGAATCTTGTGGAACGAAGCACTGTTATAATTCAACCATCGCACAGAGAAGAGATATCTGCAATGAAAACTGGATTATTTTGATGTAACTAAAAGCGATGTGTTGACACAATACAAAAGGATGCCCGTAGAGCAGAGCATCCATTAACGTTTGGGGTCGCAATAGCCTGCGAAGTTGTAGGATCAATTTTCATTCTGGGTGGTAATCTTTGACGTAGTAATATTCGTTAATAATTTCATGGAGAAAGATACAAGAAGTTAATAGCTGTCTCTAGTTTGTTTAAATATAGATGTCTAGTTGTGGTGAGTTTTCCAAGTGCTCTAACTTGCGAATAAGTAATTGTAGAGTTCAGAGCTTTCACGCGTGTAGTTGCAGTTATACATACAAATATTGATCCTCCTTCAATGGAACTTGATGCATGTCTTTTAGGTGGAGGTTTTGGTTCTGGAAAAGCAAGTCTTGGGGAAATTGAGGTTCTGAAAATCACCCAATTTGCTTCCATATGGGGCTTCAATCTGACGCACCGAGAAAACAATGGTGTTACATTTTACAGACCATCAAGGATACCTGAAGGATTCCACTGCCTTGGTCACTTTTGCCAACGTAATGACCAGCCCCTGCATGGTTATCTTCTTGTTGCGAGGGAAGTAGATGCTTATTTTCAGGAAGGTGATCATGTTAGCAACATTGTTAAATTGCCAGCCCTTGTGAAACCCCTTGATTATACATTGATATGGAGTCCAGACGATGGGAGAGAGGAGCAGTACAGTGAATGTGCTTACATTTGGCTACCTCAACCGCCTGATGGTTATAAATCCATGGGTTATTTTGTTACTAACAAGCTAAAAAAGCCTGAATTAGGTGAAGTAAGGTGCGTTCGAGATGATTTAACCGATAGATGTGAAACTTATCGCTTAATGCTTAATATCAGTTTGAAATGTACAAACTTTCCAGTACAGATTTGGAGTACAAGAGCATGTCACCGGGGGATGCTTGGAAGGGGTGTTCCCGTAGGAACATTTTATTCTGGTAGTCACAAAGTCACTGAAAAAGAGCTTCCTATTGCGTGCTTAAAAAACCTGGATTCTACACTGCATACAATGCCGAATCTCGATCAGATTCACGCTCTTATCAACCACTATGGACCCACTTTCTTCTTTCATCCCAAAGAAATCTACTTGCCATCTTCTGTTTCCTGGTTTTTCGAAAATGGGGTGCTGTTACACAGAGATGGTATGTCATCTGGGGAGGCCATTCATGTCTGTGGCACAAATTTGCCAGGTGGTGGGAGACATGAGACGGTATGTTGGATGGATTTGCCCAGTGATGATTGTAGAGACAAGATCATATATGGAAATCTGGAAAGCGCCAAACTTTATGTTCATGTGAAGCCAGCTCTGGGAGGGACATTCACGGATATTGCTATGTGGGTTTTCTGTCCCTTCAATGGATCAGCCACTCTTAAGCTTGGAATCATGGATATCAGTCTTGGGAAGATTGGACAACATGTGGGAGATTGGGAGCATGTCACCCTCAGGATCTGCAACTTCACAGGAGAACTTAGTAGCATTTACTTTTCCCAGCACAGTGGTGGTGAATGGGTGGATGCTTACAATTTGGAGTTCATACAAGGGAACAAAGCCATAGTTTACTCCTCAAAGAGCGGACATGCTAGCTACCCTCATCCTGGGGTCTACATTCAAGGCTCTGCAATGCTCGGGATCGGAATTAGGAACGACTGTGCATGTAGTCATCTTTGTATCGATTCAAGCAGCCATTATGAAATAGTTGCAGCAGAGTACTTGAGAGACAATGGCGTTGTGGAGCCTTGTTGGTTGCAGTTCATGAGAGAATGGGGTCCGACTATCATCTACAGCTCGAGAACGACGCTTGACAAAATGATTAATTTCCTTCCGTCGATGATTCGGTTTTCGGTTGCAAACATAATCGGAAAGTTACCAGGGGAATTGTTTGGAGAGGGTGGCCCAACAGGGCCGAAGGAGAAGAACAATTGGGAAGGAGATGAGAGAGGCTAAAATGTTCTTGGGCATTCTACATTTGTTGCTGTTATTGTGAGGTGAAAATGCTTTGGTTTTTGCTGAGGAAAATGCTAAATTTAAATTAAAAATATATTTTTTAAACCAGATCTCACGTACCAGACCTCCCCTCCCCTAACGAGGGTGTAGAAACCTCCCCTTGTAAGAGTGGGAAAACCTCTCTCAAGCAGACCTCTTTAGGGGAGGGTGTAGAAACCTCCCCTAACAAGGGCGATACATAATGGGCTAAAACGGATATGTTTGCTAATGTTGAGCTTGGACCATTACAAATGGTATTAGAGTTAGACACTGAGATGTGTCAACGATGACGCTGGCCCAAGGAAAGTAGATTGTGAGATCTCATTCTTGGGTGTGAAAATTTGGCCAAAGTGGACAAATATTTGCTAGCGGTGTACTATAGATGTATTTTCTATAATTTAACCTAATTTTTTTAAATTAATTATAAGGTTATGAACTATATTAAAGAACAAATAATATTATGACCAAATATACATAATTTGACCCATAATGTATTTTCTGTAATTTATTGAAATGAAAAGATATTGATGATTGATGTGTAGTATGAGTGAATGGCTCTCCTCCTTACACAGCTTCCCCCGTCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCGCTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGGTAATTCTATCGCTCTCTCCCTTCCCACTTTGCACCCTTAATTCTTATCAGCAAGTTAAACACTACCTCCCTGCTCTCTTTAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTTTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATTTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTTAAAGAGTTAATTGGAAATGTGTTGTATGTTTTTCTATCCCCTCTTCTTTCTTCAACTAAATCAAATTCTTTCTTGTTCATGTTATCTTCCACACAAAAGAAACAAAAATCAAGGTGCTTACAAATTAGCCAGTCAAAAACAAAAGGTCCTACTTGGAACATTGCAATCCAATGGCTTTCCCATTAGTATCAAAGTACAATCTTAAGAACGAAACGTTCTCATCTCTAAAACCAACAGAAAGAGGAGTATAAGAAGAACAAGCAGCATTACACTCCATTGGCATAGTTGATGAACTGATCTGTAATTTTGATGTGATTTTTTATCCGTATCTCCAATGAAGAACTGAACTCCTGGGCTTTCCATTCTGACCTCACTTTCATTCAATGTTGAATTGTTCACACCCTGAATGTTGCTGTTTACATAAATGTTTATGCAACAACAGTTGGGCAATTTACCTTCACTTCCATGGCTGACTGACATTGAAGCTCCAATGTTTCTACCTCCCAATCTCACTCGCTCGAATGCTCCGTTCCCATCCTCGTCTCCCACCTCCATCTTTCCTTGGATTCTATTACCTTCACCTATGAATCGTCCTCTTCCAAATCTGATGTTTGAGTTTATATATTTGATACTCCAATTCAAAAGTGCATCTCGGATTCCTTCCTTATGTAATGGGTTTTCTTAGTCCCTCACTTTTCAGCTTCAAAAGCAGCTTATA

mRNA sequence

TGACAACCGGCTGTGAAGATCATTGGTTGAAATTTGAAATGGGAATTGCTGGAGAAAAGTTTCCCTCCATAGCAACATAAATACTTCTTCTCCTTCATCACAGACATTTCTTGAATGAAATCAATCCCTCACTTTTTGCTATCTCATTTTCCCGAATGCGCGATCGATGTCGCGGATGCCGCCGACTTAGCTGATGTAAAGGCCATTCGCCCCAAATTGGTTTCCATCTTCAAACGCTCTCTCCAATCCCACAATTTTCCAGAAGGAAGCGGTGGAAGATGATGATCTCTGATCAAGGGTTGCTTGCACGAGTTCCATAAATCCATCGGAAGAAGGGGTGAATAAATCCTGGGGCTGCCAAGCTGTGCCGTTTGGGCTTATTACTGCTTCTTGTGGTTTAGCTTTGAGTGCTTTAGATGACCTCGCCATTTATCATAGCTGTAGCAGATGACGTCCAGATGCAACTTGTTCCTCTGGAGCAATACCCACGACCTTTTGCCTTCGGATGAGCCCTACCATTTCTCGTTGCCTTCCCCAGTTCCTGAATGGCCTCAAGGTGGAGGTTTTGGTTCTGGAAAAGCAAGTCTTGGGGAAATTGAGGTTCTGAAAATCACCCAATTTGCTTCCATATGGGGCTTCAATCTGACGCACCGAGAAAACAATGGTGTTACATTTTACAGACCATCAAGGATACCTGAAGGATTCCACTGCCTTGGTCACTTTTGCCAACGTAATGACCAGCCCCTGCATGGTTATCTTCTTGTTGCGAGGGAAGTAGATGCTTATTTTCAGGAAGGTGATCATGTTAGCAACATTGTTAAATTGCCAGCCCTTGTGAAACCCCTTGATTATACATTGATATGGAGTCCAGACGATGGGAGAGAGGAGCAGTACAGTGAATGTGCTTACATTTGGCTACCTCAACCGCCTGATGGTTATAAATCCATGGGTTATTTTGTTACTAACAAGCTAAAAAAGCCTGAATTAGGTGAAGTAAGGTGCGTTCGAGATGATTTAACCGATAGATGTGAAACTTATCGCTTAATGCTTAATATCAGTTTGAAATGTACAAACTTTCCAGTACAGATTTGGAGTACAAGAGCATGTCACCGGGGGATGCTTGGAAGGGGTGTTCCCGTAGGAACATTTTATTCTGGTAGTCACAAAGTCACTGAAAAAGAGCTTCCTATTGCGTGCTTAAAAAACCTGGATTCTACACTGCATACAATGCCGAATCTCGATCAGATTCACGCTCTTATCAACCACTATGGACCCACTTTCTTCTTTCATCCCAAAGAAATCTACTTGCCATCTTCTGTTTCCTGGTTTTTCGAAAATGGGGTGCTGTTACACAGAGATGGTATGTCATCTGGGGAGGCCATTCATGTCTGTGGCACAAATTTGCCAGGTGGTGGGAGACATGAGACGGTATGTTGGATGGATTTGCCCAGTGATGATTGTAGAGACAAGATCATATATGGAAATCTGGAAAGCGCCAAACTTTATGTTCATGTGAAGCCAGCTCTGGGAGGGACATTCACGGATATTGCTATGTGGGTTTTCTGTCCCTTCAATGGATCAGCCACTCTTAAGCTTGGAATCATGGATATCAGTCTTGGGAAGATTGGACAACATGTGGGAGATTGGGAGCATGTCACCCTCAGGATCTGCAACTTCACAGGAGAACTTAGTAGCATTTACTTTTCCCAGCACAGTGGTGGTGAATGGGTGGATGCTTACAATTTGGAGTTCATACAAGGGAACAAAGCCATAGTTTACTCCTCAAAGAGCGGACATGCTAGCTACCCTCATCCTGGGGTCTACATTCAAGGCTCTGCAATGCTCGGGATCGGAATTAGGAACGACTGTGCATGTAGTCATCTTTGTATCGATTCAAGCAGCCATTATGAAATAGTTGCAGCAGAGTACTTGAGAGACAATGGCGTTGTGGAGCCTTGTTGGTTGCAGTTCATGAGAGAATGGGGTCCGACTATCATCTACAGCTCGAGAACGACGCTTGACAAAATGATTAATTTCCTTCCGTCGATGATTCGGTTTTCGGTTGCAAACATAATCGGAAAGTTACCAGGGGAATTGTTTGGAGAGGGTGGCCCAACAGGGCCGAAGGAGAAGAACAATTGGGAAGGAGATGAGAGAGGCTAAAATGTTCTTGGGCATTCTACATTTGTTGCTGTTATTGTGAGCTTCCCCCGTCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCGCTCTCTGGTCTCTCCCTCTCTGCACTACCATTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTTTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATTTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGAAACAAAAATCAAGGTGCTTACAAATTAGCCAGTCAAAAACAAAAGGTCCTACTTGGAACATTGCAATCCAATGGCTTTCCCATTAGTATCAAAGTACAATCTTAAGAACGAAACGTTCTCATCTCTAAAACCAACAGAAAGAGGAGTATAAGAAGAACAAGCAGCATTACACTCCATTGGCATAGTTGATGAACTGATCTGTAATTTTGATGTGATTTTTTATCCGTATCTCCAATGAAGAACTGAACTCCTGGGCTTTCCATTCTGACCTCACTTTCATTCAATGTTGAATTGTTCACACCCTGAATGTTGCTGTTTACATAAATGTTTATGCAACAACAGTTGGGCAATTTACCTTCACTTCCATGGCTGACTGACATTGAAGCTCCAATGTTTCTACCTCCCAATCTCACTCGCTCGAATGCTCCGTTCCCATCCTCGTCTCCCACCTCCATCTTTCCTTGGATTCTATTACCTTCACCTATGAATCGTCCTCTTCCAAATCTGATGTTTGAGTTTATATATTTGATACTCCAATTCAAAAGTGCATCTCGGATTCCTTCCTTATGTAATGGGTTTTCTTAGTCCCTCACTTTTCAGCTTCAAAAGCAGCTTATA

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTTTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATTTGAAGCGCACGGACGGCCTCGGAATCCGATCGTGATGATGATGGTTCGGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGA

Protein sequence

MATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK
Homology
[Close]
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 222.2 bits (565), Expect = 4.5e-57
Identity = 114/154 (74.03%), Postives = 126/154 (81.82%), Query Frame = 1 

Query: 29  RSAFSAFYGRSLSVSGGKCQTLGRRRFEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDV 88
           +S  S+F G SL     K  +L R       RP   +VMM  RP IQFIQGTDEQT+PDV
Sbjct: 33  QSLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDV 92

Query: 89  RLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAG 148
           RLTKSRDGTNG+AIF FD+PSVFDSSAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA 
Sbjct: 93  RLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPAL 152

Query: 149 IEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 183
           IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 153 IEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 1 

Query: 1   MATLQSLASTPHLHH-----PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 61  EAHGRPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 120
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 183
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 71/130 (54.62%), Postives = 94/130 (72.31%), Query Frame = 1 

Query: 53  RRFEAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD 112
           +RF    R R+ +V       IQF++G +E  VP+VRLT+S+DG+NG A F F +P VF+
Sbjct: 21  KRFSKSAR-RSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFE 80

Query: 113 SSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYS 172
           +    GDITG ++ DEEG + +VDVNAKF+NGKP GIEA+YVM+T  +W+RFMRFMERY+
Sbjct: 81  NGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYA 140

Query: 173 NANGLQFVKK 183
             NGL F KK
Sbjct: 141 EDNGLGFSKK 147

[Close]
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F  P++ D S+A+ G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-34
Identity = 64/110 (58.18%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 73  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDEEGV 132
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F  P++ D ++A+ G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 133 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 182
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.1e-73
Identity = 148/187 (79.14%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA+LQSLAST     PHL HPSSTK   S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 253

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
               R  NPI+M++  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F++PSVFDSSA
Sbjct: 254 RQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 313

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 314 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 373

Query: 181 GLQFVKK 183
           G+QFVKK
Sbjct: 374 GMQFVKK 376

[Close]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-62
Identity = 131/187 (70.05%), Postives = 147/187 (78.61%), Query Frame = 1 

Query: 1   MATLQSLA-----STPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MATLQSLA     S   L+ P S     S   HRSA S F G+SL V+  +         
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPT----- 60

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
             + +  +PIVMM V+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FD+PSVFDSS+
Sbjct: 61  RWNSKRCSPIVMM-VKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 183
           GLQF+KK
Sbjct: 181 GLQFIKK 181

[Close]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-61
Identity = 131/187 (70.05%), Postives = 146/187 (78.07%), Query Frame = 1 

Query: 1   MATLQSLA-----STPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MATLQSLA     S   L+ P S     S   HRSA S F G+SL V+  +         
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGIPSWVAHRSANSQFNGQSLQVAQSRISPT----- 60

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
             + +  +PIVMM V+PKIQFIQGTDEQT PDVRLTKSRDGTNGMAIF+FD+PSVFDSS+
Sbjct: 61  RWNSKRCSPIVMM-VKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 183
           GLQF+KK
Sbjct: 181 GLQFIKK 181

[Close]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match: M1AG88_SOLTU (Photosystem II reaction center Psb28 protein OS=Solanum tuberosum GN=PGSC0003DMG400008585 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-61
Identity = 125/185 (67.57%), Postives = 147/185 (79.46%), Query Frame = 1 

Query: 1   MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFE 60
           MATLQSLA +P L    H P S    AS  +H+SA S+F G+ L +S  +  T       
Sbjct: 1   MATLQSLAFSPALSHTSHQPRSLLGIASRIVHQSAGSSFNGQRLCLSRSRFST------N 60

Query: 61  AHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 120
              +  + + +MMV+PKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD+PSVFDSS E
Sbjct: 61  IKNQKMSRLCIMMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAGIEAKY+MRTPR+WDRFMRFMERY+N+NG
Sbjct: 121 VGDITGFYMIDEEGVLTSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANSNG 179

Query: 181 LQFVK 182
           LQFVK
Sbjct: 181 LQFVK 179

[Close]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match: K4CU78_SOLLC (Photosystem II reaction center Psb28 protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.0e-61
Identity = 123/185 (66.49%), Postives = 148/185 (80.00%), Query Frame = 1 

Query: 1   MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFE 60
           MATLQSLA +P L    H P S    AS  +H+S+ S+F G+ L +S  +  T      +
Sbjct: 1   MATLQSLAFSPALSHTTHQPRSLLGIASRIVHQSSGSSFNGQRLCLSRSRFAT------D 60

Query: 61  AHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 120
              +  + + ++MV+PKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD+PSVFDSS E
Sbjct: 61  IQNKKMSRLCIVMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAGIEAKY+MRTPR+WDRFMRFMERY+N+NG
Sbjct: 121 VGDITGFYMIDEEGVLTSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANSNG 179

Query: 181 LQFVK 182
           LQFVK
Sbjct: 181 LQFVK 179

[Close]
BLAST of Cp4.1LG17g09650 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-52
Identity = 93/124 (75.00%), Postives = 111/124 (89.52%), Query Frame = 1 

Query: 60  RPRNPI-VMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 119
           RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 120 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 179
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 180 FVKK 183
           FVKK
Sbjct: 194 FVKK 197

[Close]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 9.6e-76
Identity = 154/187 (82.35%), Postives = 165/187 (88.24%), Query Frame = 1 

Query: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA+LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
               RP NPI  +MV+PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 183
           GLQFVKK
Sbjct: 181 GLQFVKK 183

[Close]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.5e-73
Identity = 148/187 (79.14%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA+LQSLAST     PHL HPSSTK   S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 103

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
               R  NPI+M++  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F++PSVFDSSA
Sbjct: 104 RQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 183
           G+QFVKK
Sbjct: 224 GMQFVKK 226

[Close]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.5e-73
Identity = 148/187 (79.14%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA+LQSLAST     PHL HPSSTK   S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
               R  NPI+M++  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F++PSVFDSSA
Sbjct: 61  RQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 181 GLQFVKK 183
           G+QFVKK
Sbjct: 181 GMQFVKK 183

[Close]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 4.5e-73
Identity = 148/187 (79.14%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRF 60
           MA+LQSLAST     PHL HPSSTK   S +LH SAFS+F+GRSLS+S  KC TL RR +
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 253

Query: 61  EAHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 120
               R  NPI+M++  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F++PSVFDSSA
Sbjct: 254 RQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 313

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 314 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 373

Query: 181 GLQFVKK 183
           G+QFVKK
Sbjct: 374 GMQFVKK 376

[Close]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match: gi|697125451|ref|XP_009616744.1| (PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule:MF_01370} [Nicotiana tomentosiformis])

HSP 1 Score: 245.7 bits (626), Expect = 6.1e-62
Identity = 127/185 (68.65%), Postives = 145/185 (78.38%), Query Frame = 1 

Query: 1   MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRFE 60
           MATLQSLA +P L    H P S    AS  +H+SA S+F G+ L      C T  R    
Sbjct: 1   MATLQSLAFSPALSHSSHQPRSLLGIASGVVHQSAGSSFNGQRL------CLTRSRFASN 60

Query: 61  AHGRPRNPIVMMMVRPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 120
              +  + + +MMV+PKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD PSVFDSS E
Sbjct: 61  IQNQKMSRLSIMMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDNPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAG+EAKY+MRTPREWDRFMRFMERY+NANG
Sbjct: 121 VGDITGFYMIDEEGVLSSVDVNAKFVNGKPAGVEAKYIMRTPREWDRFMRFMERYANANG 179

Query: 181 LQFVK 182
           LQFVK
Sbjct: 181 LQFVK 179

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g09650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSB28_ORYSJ4.5e-5774.03Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs... [more]
PSB28_ARATH3.3e-5257.45Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali... [more]
PSB28_OSTTA1.4e-3454.62Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus taur... [more]
PSB28_ODOSI1.8e-3460.00Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3... [more]
PSB28_PHATC4.1e-3458.18Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai... [more]
BLAST of Cp4.1LG17g09650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9C2_CUCSA3.1e-7379.14Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ... [more]
A0A0B0MPB9_GOSAR7.2e-6270.05Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079... [more]
A0A0D2QS78_GOSRA1.6e-6170.05Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G... [more]
M1AG88_SOLTU2.7e-6167.57Photosystem II reaction center Psb28 protein OS=Solanum tuberosum GN=PGSC0003DMG... [more]
K4CU78_SOLLC8.0e-6166.49Photosystem II reaction center Psb28 protein OS=Solanum lycopersicum PE=3 SV=1[more]
BLAST of Cp4.1LG17g09650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28660.21.2e-5275.00 photosystem II reaction center PSB28 protein[more]
BLAST of Cp4.1LG17g09650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120023|ref|XP_008459971.1|9.6e-7682.35PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ... [more]
gi|778711592|ref|XP_011656764.1|4.5e-7379.14PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X... [more]
gi|778711596|ref|XP_011656765.1|4.5e-7379.14PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati... [more]
gi|700191166|gb|KGN46370.1|4.5e-7379.14hypothetical protein Csa_6G087980 [Cucumis sativus][more]
gi|697125451|ref|XP_009616744.1|6.1e-6268.65PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule:... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR005610PSII_Psb28_class-1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g09650.1Cp4.1LG17g09650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005610Photosystem II Psb28, class 1PRODOMPD012692coord: 75..174
score: 4.0
IPR005610Photosystem II Psb28, class 1HAMAPMF_01370PSII_Psb28coord: 71..180
score: 30
IPR005610Photosystem II Psb28, class 1PFAMPF03912Psb28coord: 74..179
score: 3.4
IPR005610Photosystem II Psb28, class 1TIGRFAMsTIGR03047TIGR03047coord: 74..180
score: 4.4
NoneNo IPR availablePANTHERPTHR34963FAMILY NOT NAMEDcoord: 2..182
score: 1.4E
NoneNo IPR availablePANTHERPTHR34963:SF2PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTICcoord: 2..182
score: 1.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g09650Cucsa.348850Cucumber (Gy14) v1cgycpeB0911
Cp4.1LG17g09650CmaCh17G013700Cucurbita maxima (Rimu)cmacpeB389
Cp4.1LG17g09650CmaCh08G000440Cucurbita maxima (Rimu)cmacpeB914
Cp4.1LG17g09650CmoCh08G000440Cucurbita moschata (Rifu)cmocpeB851
Cp4.1LG17g09650CmoCh17G013240Cucurbita moschata (Rifu)cmocpeB352
Cp4.1LG17g09650Cla007062Watermelon (97103) v1cpewmB341
Cp4.1LG17g09650Csa6G087980Cucumber (Chinese Long) v2cpecuB322
Cp4.1LG17g09650MELO3C022393Melon (DHL92) v3.5.1cpemeB284
Cp4.1LG17g09650ClCG06G001400Watermelon (Charleston Gray)cpewcgB298
Cp4.1LG17g09650CSPI06G06970Wild cucumber (PI 183967)cpecpiB323
Cp4.1LG17g09650Lsi09G018010Bottle gourd (USVL1VR-Ls)cpelsiB249
Cp4.1LG17g09650MELO3C022393.2Melon (DHL92) v3.6.1cpemedB332
Cp4.1LG17g09650Bhi12G002083Wax gourdcpewgoB0389
Cp4.1LG17g09650CsGy6G006990Cucumber (Gy14) v2cgybcpeB783
Cp4.1LG17g09650Carg11538Silver-seed gourdcarcpeB0022
Cp4.1LG17g09650Carg03787Silver-seed gourdcarcpeB1359
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g09650Cp4.1LG12g10160Cucurbita pepo (Zucchini)cpecpeB170
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g09650Cucurbita maxima (Rimu)cmacpeB529
Cp4.1LG17g09650Bottle gourd (USVL1VR-Ls)cpelsiB270
Cp4.1LG17g09650Watermelon (Charleston Gray)cpewcgB307
Cp4.1LG17g09650Cucumber (Gy14) v2cgybcpeB353
Cp4.1LG17g09650Melon (DHL92) v3.6.1cpemedB352
Cp4.1LG17g09650Silver-seed gourdcarcpeB1097
Cp4.1LG17g09650Cucumber (Chinese Long) v3cpecucB0403
Cp4.1LG17g09650Wax gourdcpewgoB0406
Cp4.1LG17g09650Cucurbita pepo (Zucchini)cpecpeB258