Carg11538 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11538
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosystem II reaction center Psb28 protein
Location	Cucurbita_argyrosperma_scaffold_083 : 538649 .. 540027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGGTATAACTCTATCACTCTCTGCATTCCCCTTTCCCCAACCCTAATTCTCATCATCATCACCAAACTCACTCTTCTTCAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC

mRNA sequence

TCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTGGCTGCGTTTCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGAAAATCGCCCAATACGGTTTCTGCTTCTCATTGTCTGTTCTGTGATTAGATTGACCTGTTTTTGGCCAATTTTGTTCTGCGTTGAATCACGATCAATACTGTGTTGATGCTGATGGACGAAGAACTTGTTGGAATCTATGCCTTCTTCTTCAACAAAGCTAAGTCTTCAACTTTCCAACATACCATTTCTTACTCATTCAACTCAATTCTATCCTAAACCATTTCTTCATCCAATTCTATCCTAAACTACAAAGTATATAGGAAAGGATAATAAAACCCACGAAGGGATCTTGGGAGTTAGCATGGTTGAGTTTAATGCTCAAAAAGAGACACTAAGAACTTGGGAGATTCTGATTTATTTTATGCTTACTTCATGTTTGAAAATCGGTGTAAAAATGGGACAAATTGGAGAAATATAAGAGTACCCATATGATTCTTTGTTTCAAATTGGATCTTTCTCAATTGAAGGTAATTTCAAAGGAGTTAATAAGAAATTTTGAAAAGTTAAAAGTCGTTTAGACTAGATTTATGTATCCATAAGAAGCATATAGACTAATAAAGCTATAAGACTAAAATAAAAGATGGTAAAGATAGCAATGAGATTCTAACCGTACTATATAGCCGATTACTACCTCATAGCTCGGGAATTTGATGAGGTGATGTGTTAGTTTGGTTCC

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCTTTCTTCTCCCCATCTGCATCATCCTTCATCCACCAACACCAAAGCAGCTTTTGCCTCCGCCAGACTCCACAGCAGCGTCTTCTCCGCATTCCACGGCCGTTCCCTTAACGTCTCTGGCGGAAAATGCCAGACGGTCACTCGCCGCAGATGTCAACCCCACGGACGGCCGTCCAATACGATCCTCATGGTTCTGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGGCTGACAAAATCCCGAGACGGCACCAACGGAATGGCCATTTTCAAGTTCGAGCAGCCGTCGGTGTTCGACTCGTCGGGGGAGGTCGGGGACATTACCGGATTCTACATGATCGATGAGGAAGGTGTGATTCAGTCGGTGGATGTGAACGCCAAGTTCATTAATGGAAAACCTGCGGGAATCGAGGCCAAGTACGTGATGCGGACTCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGGTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Carg11538 vs. NCBI nr
Match: XP_023547762.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.9 bits (951), Expect = 2.5e-99
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHH SSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHSSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 230

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BLAST of Carg11538 vs. NCBI nr
Match: XP_022953298.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 368.6 bits (945), Expect = 1.2e-98
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAA ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAACASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQP+GRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 230

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BLAST of Carg11538 vs. NCBI nr
Match: XP_022991617.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 367.1 bits (941), Expect = 3.6e-98
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSS FSAFHGRSLNVSGGKCQTVTRR
Sbjct: 37  MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RC+PHGR SNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 217 GLQFVKK 223

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: XP_023547763.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 1.8e-97
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHH SSTNTK AFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHSSSTNTK-AFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of Carg11538 vs. NCBI nr
Match: XP_022953299.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 363.2 bits (931), Expect = 5.2e-97
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLASTSLSSPHLHHPSSTNTKA  ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR
Sbjct: 44  MATLQSLASTSLSSPHLHHPSSTNTKAC-ASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 103

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           RCQP+GRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG
Sbjct: 104 RCQPYGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 163

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 164 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 223

Query: 181 GLQFVKK 188
           GLQFVKK
Sbjct: 224 GLQFVKK 229

[Close]

BLAST of Carg11538 vs. TAIR10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein)

HSP 1 Score: 197.6 bits (501), Expect = 6.9e-51
Identity = 111/197 (56.35%), Postives = 137/197 (69.54%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHP-SSTNTKAAFA-SARLHSSVFSAFHGRSLNVSGGKCQTV 60
           MA ++S+ S TS++    + P S T     FA   R    V S+     +  S      V
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGTRKNPNFALLIRRIGIVLSSCSVLPIKSSSFTGSPV 60

Query: 61  TRRRCQPHGR-------PSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF 120
           +  R QP  R       P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F
Sbjct: 61  SLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSF 120

Query: 121 EQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFM 180
           +QPSVFDSSGEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFM
Sbjct: 121 DQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFM 180

Query: 181 RFMERYSNANGLQFVKK 188
           RFMERYS+ NGLQFVKK
Sbjct: 181 RFMERYSDQNGLQFVKK 197

[Close]

BLAST of Carg11538 vs. Swiss-Prot
Match: sp|Q0JG75|PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-54
Identity = 110/153 (71.90%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 37  SVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVL--PKIQFIQGTDEQTVPDVR 96
           S+ S+F G SL     K  ++ R       RPS  ++M+   P IQFIQGTDEQT+PDVR
Sbjct: 34  SLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDVR 93

Query: 97  LTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGI 156
           LTKSRDGTNG+AIF F+QPSVFDSS E+GDITGFYMID+EGV+QSVDV+AKF+NGKPA I
Sbjct: 94  LTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALI 153

Query: 157 EAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 188
           EAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 154 EAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]

BLAST of Carg11538 vs. Swiss-Prot
Match: sp|Q8W0Y8|PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50
Identity = 107/188 (56.91%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 60
           MA ++S+ S TS++    + P S    ++ +   + SS F+        VS  + Q  +R
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFT-----GSPVSLPRAQPSSR 60

Query: 61  RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120
              +P  +P +  +MV P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F+QPSVFDSS
Sbjct: 61  TALRPM-KPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
           GEVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 181 NGLQFVKK 188
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]

BLAST of Carg11538 vs. Swiss-Prot
Match: sp|P49508|PSB28_TRICV (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-34
Identity = 65/110 (59.09%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 78  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 137
           KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F+ P++ D S+ + G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 138 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of Carg11538 vs. Swiss-Prot
Match: sp|A0T0H5|PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.3e-34
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 78  KIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFD-SSGEVGDITGFYMIDEEGV 137
           KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F+ P++ D ++ + G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 138 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of Carg11538 vs. Swiss-Prot
Match: sp|O78418|PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-33
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 79  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEV-GDITGFYMIDEEGVI 138
           IQFIQG +E  +PDVRLT+SRDG+ G A F+F  P V ++   V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 139 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 187
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of Carg11538 vs. TrEMBL
Match: tr|A0A1S3CCN2|A0A1S3CCN2_CUCME (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 2.2e-75
Identity = 154/188 (81.91%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MATLQSLAS-TSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 60
           MA+LQSLAS TS SSPHL HPSST  + +++   LHSS FS+FHGRSL++S  KC T+TR
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYS---LHSSAFSSFHGRSLSLSTTKCHTLTR 60

Query: 61  RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120
           R  +   RP N ILMV PKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F+QPSVFDSS
Sbjct: 61  RTYRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSS 120

Query: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

Query: 181 NGLQFVKK 188
           NGLQFVKK
Sbjct: 181 NGLQFVKK 183

[Close]

BLAST of Carg11538 vs. TrEMBL
Match: tr|A0A0A0K9C2|A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 5.2e-69
Identity = 137/168 (81.55%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 20  PSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRRRCQPHGRPSNTILMVLPKI 79
           PSST  K +++   LHSS FS+FHGRSL++S  KC T+TRR  +   R  N ILMVLPKI
Sbjct: 214 PSSTKPKLSYS---LHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQ--RSWNPILMVLPKI 273

Query: 80  QFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSGEVGDITGFYMIDEEGVIQS 139
           QFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS EVGDITGFYMIDEEG+IQS
Sbjct: 274 QFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQS 333

Query: 140 VDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 188
           VDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVKK
Sbjct: 334 VDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK 376

[Close]

BLAST of Carg11538 vs. TrEMBL
Match: tr|A0A2I4F6T0|A0A2I4F6T0_9ROSI (Photosystem II reaction center Psb28 protein OS=Juglans regia OX=51240 GN=LOC108996055 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.4e-61
Identity = 131/187 (70.05%), Postives = 146/187 (78.07%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATL SLA   L+SP  HH     + +   S  +H S  S+F G+SL +   +   V RR
Sbjct: 1   MATLHSLA---LASPVSHHLQQPRSSSGIVSWFVHRSALSSFSGQSLRMPRLRLVPV-RR 60

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
            C    RP    +M  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSSG
Sbjct: 61  NCH---RP--VTMMAKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 178

Query: 181 GLQFVKK 188
           GLQF+KK
Sbjct: 181 GLQFIKK 178

[Close]

BLAST of Carg11538 vs. TrEMBL
Match: tr|A0A2P5C0J8|A0A2P5C0J8_9ROSA (Photosystem II reaction center Psb28 protein OS=Trema orientalis OX=63057 GN=TorRG33x02_302080 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.0e-61
Identity = 130/187 (69.52%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLA +S  S +LH P S + K ++    +  S  SAF+G+SL +     +    R
Sbjct: 1   MATLQSLAFSSPLSNYLHQPRSYSGKVSWT---IQGSSHSAFNGQSLQLH----RLRWAR 60

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           + Q    P + I MV P IQFIQGTDEQT+PDVRLTKSRDGTNGMAIFKF+QPSVFDSSG
Sbjct: 61  QRQNVQVPGSMIKMVKPAIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFKFDQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MR+PREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRSPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 188
           GLQF+KK
Sbjct: 181 GLQFIKK 180

[Close]

BLAST of Carg11538 vs. TrEMBL
Match: tr|A0A2P5B6J3|A0A2P5B6J3_PARAD (Photosystem II reaction center Psb28 protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_267740 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 8.8e-61
Identity = 129/187 (68.98%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 1   MATLQSLASTSLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTRR 60
           MATLQSLA +S  S +LH P S + K ++    +  S  SAF+G+SL +     +    R
Sbjct: 1   MATLQSLAFSSPLSNYLHQPRSYSGKVSWT---IQGSSHSAFNGQSLQLP----RLRWAR 60

Query: 61  RCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 120
           + Q    P + I MV P IQFIQGT+EQT+PDVRLTKSRDGTNGMAIFKF+QPSVFDSSG
Sbjct: 61  QRQNARVPGSMIKMVKPAIQFIQGTNEQTIPDVRLTKSRDGTNGMAIFKFDQPSVFDSSG 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MR+PREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRSPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 188
           GLQF+KK
Sbjct: 181 GLQFIKK 180

The following BLAST results are available for this feature:

BLAST of Carg11538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547762.1	2.5e-99	99.47	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
XP_022953298.1	1.2e-98	98.93	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
XP_022991617.1	3.6e-98	98.40	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
XP_023547763.1	1.8e-97	98.93	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cuc...	[more]
XP_022953299.1	5.2e-97	98.40	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cuc...	[more]

BLAST of Carg11538 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28660.2	6.9e-51	56.35	photosystem II reaction center PSB28 protein	[more]

BLAST of Carg11538 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0JG75\|PSB28_ORYSJ	2.2e-54	71.90	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
sp\|Q8W0Y8\|PSB28_ARATH	3.3e-50	56.91	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
sp\|P49508\|PSB28_TRICV	3.3e-34	59.09	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
sp\|A0T0H5\|PSB28_PHATC	7.3e-34	57.27	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
sp\|O78418\|PSB28_GUITH	1.6e-33	60.55	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of Carg11538 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCN2\|A0A1S3CCN2_CUCME	2.2e-75	81.91	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0K9C2\|A0A0A0K9C2_CUCSA	5.2e-69	81.55	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
tr\|A0A2I4F6T0\|A0A2I4F6T0_9ROSI	1.4e-61	70.05	Photosystem II reaction center Psb28 protein OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2P5C0J8\|A0A2P5C0J8_9ROSA	3.0e-61	69.52	Photosystem II reaction center Psb28 protein OS=Trema orientalis OX=63057 GN=Tor...	[more]
tr\|A0A2P5B6J3\|A0A2P5B6J3_PARAD	8.8e-61	68.98	Photosystem II reaction center Psb28 protein OS=Parasponia andersonii OX=3476 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR005610	PSII_Psb28_class-1
IPR038676	Psb28_c1_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11538-RA	Carg11538-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	G3DSA:2.40.30.220		coord: 76..187 e-value: 4.8E-47 score: 160.9
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 79..184 e-value: 2.4E-43 score: 146.6
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 79..185 e-value: 4.8E-45 score: 150.3
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..187
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 80..179 e-value: 1.0E-48 score: 486.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 76..185 score: 30.366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 1..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11538	Cla007062	Watermelon (97103) v1	carwmB0015
Carg11538	Csa6G087980	Cucumber (Chinese Long) v2	carcuB0012
Carg11538	MELO3C022393	Melon (DHL92) v3.5.1	carmeB0010
Carg11538	ClCG06G001400	Watermelon (Charleston Gray)	carwcgB0013
Carg11538	CSPI06G06970	Wild cucumber (PI 183967)	carcpiB0012
Carg11538	Cucsa.348850	Cucumber (Gy14) v1	carcgyB0012
Carg11538	CmaCh08G000440	Cucurbita maxima (Rimu)	carcmaB0023
Carg11538	CmaCh17G013700	Cucurbita maxima (Rimu)	carcmaB0020
Carg11538	CmoCh08G000440	Cucurbita moschata (Rifu)	carcmoB0024
Carg11538	CmoCh17G013240	Cucurbita moschata (Rifu)	carcmoB0021
Carg11538	Lsi09G018010	Bottle gourd (USVL1VR-Ls)	carlsiB011
Carg11538	Cp4.1LG12g10160	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11538	Cp4.1LG17g09650	Cucurbita pepo (Zucchini)	carcpeB0022
Carg11538	CsGy6G006990	Cucumber (Gy14) v2	carcgybB0011
Carg11538	MELO3C022393.2	Melon (DHL92) v3.6.1	carmedB0011
Carg11538	Bhi12G002083	Wax gourd	carwgoB0013

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11538	Carg03787	Silver-seed gourd	carcarB014

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11538	Watermelon (97103) v2	carwmbB0011
Carg11538	Cucumber (Chinese Long) v3	carcucB0012