CmaCh08G000440 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh08G000440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II reaction center Psb28 protein
LocationCma_Chr08 : 226702 .. 227750 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAATGAAATGAAAAGATATTGATGATTGATGTGTAGTAATAGTGAATGGCTCTCCTCCTTACACAGCTTCCCCCATCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTGGTCTCTCCCTCTCTGCACTACCCTTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGGTAATTTCATCACTCTCTCCCTTCCCACTTTCCACCCTTAATTCTTATCAGCAAGTTAAACACTACCTCCCTGCTCTCTTTAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGAAATCCGATCGTGATGATGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGATGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTAAAAGAGTTAATTGGAAATCTGTTGTATGTTTCTATCACCTCTTCTTTCTTCAACTAAATCAAATTCTTTCTTGTTCATGTTATCTTCCACACACAAGAAACAAAAATCAACTCAATTTTATTCCA

mRNA sequence

AATTTAATGAAATGAAAAGATATTGATGATTGATGTGTAGTAATAGTGAATGGCTCTCCTCCTTACACAGCTTCCCCCATCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTGGTCTCTCCCTCTCTGCACTACCCTTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGAAATCCGATCGTGATGATGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGATGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGAAAATCGCTTAATCTGGTATCTGTTCCTCATTCTTAATTCTTTTTTCCTTCTGATTAGATTGATCTGTTTCAGCCAATTTTGTTTGGCTTTGAATCACGATCAATACTGTGATCATGCTGATGGGTAAAAGAGTTAATTGGAAATCTGTTGTATGTTTCTATCACCTCTTCTTTCTTCAACTAAATCAAATTCTTTCTTGTTCATGTTATCTTCCACACACAAGAAACAAAAATCAACTCAATTTTATTCCA

Coding sequence (CDS)

ATGGCTCTCCTCCTTACACAGCTTCCCCCATCTTCAAACCACACCATTCTGCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTGGTCTCTCCCTCTCTGCACTACCCTTGCGTTTCAATGGCGACTCTGCAATCTCTCGCCTCCACTCCCCATCTGCATCATCCTTCATCCACCAAAGTTTTCGCTTCCGCCACACTCCACCGGAGCGCCTTCTCCGCATTCTACGGCCGCTCTCTTAGCGTCTCCGGCGGAAAATGCCAGACGCTCGGTCGGCGGAGATGTGAAGCGCACGGACGGCCTCGAAATCCGATCGTGATGATGATGGTTCAGCCGAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGAGACTGACCAAATCGCGAGATGGCACCAACGGAATGGCCATTTTCAAGTTCGATGAGCCGTCGGTGTTCGACTCGTCGGCTGAGGTTGGAGACATTACAGGATTCTACATGATCGATGAGGAAGGCGTGATTCAGTCGGTGGATGTGAATGCCAAGTTCATCAACGGGAAGCCGGCAGGAATCGAGGCCAAGTACGTGATGCGGACCCCGAGGGAGTGGGACAGGTTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAGTTCGTCAAGAAATGA

Protein sequence

MALLLTQLPPSSNHTILPFISLSLSLSLVSPSLHYPCVSMATLQSLASTPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK
Homology
[Close]
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 113/154 (73.38%), Postives = 126/154 (81.82%), Query Frame = 1 

Query: 68  RSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDV 127
           +S  S+F G SL     K  +L R       RP   +VMM  +P IQFIQGTDEQT+PDV
Sbjct: 33  QSLHSSFGGVSLQCRRTKPASLHR------SRPSMQVVMMAARPAIQFIQGTDEQTIPDV 92

Query: 128 RLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAG 187
           RLTKSRDGTNG+AIF FD+PSVFDSSAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA 
Sbjct: 93  RLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPAL 152

Query: 188 IEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 222
           IEAKYVMRTPREWDRFMRFMERYS ANGLQFVKK
Sbjct: 153 IEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180

[Close]
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 1 

Query: 40  MATLQSLASTPHLHH-----PSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99
           MA ++S+ S   ++H     P S  V +S ++     S+F G  +S+   + Q   R   
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLP--RAQPSSRTAL 60

Query: 100 EAHGRPRNPI-VMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSS 159
               RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS
Sbjct: 61  ----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSS 120

Query: 160 AEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 219
            EVG+ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ 
Sbjct: 121 GEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQ 180

Query: 220 NGLQFVKK 222
           NGLQFVKK
Sbjct: 181 NGLQFVKK 182

[Close]
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-34
Identity = 66/113 (58.41%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 109 VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDE 168
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 169 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 221
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-34
Identity = 64/113 (56.64%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 109 VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFD-SSAEVGDITGFYMIDE 168
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 169 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 221
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-34
Identity = 68/121 (56.20%), Postives = 90/121 (74.38%), Query Frame = 1 

Query: 101 RNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDIT 160
           R+ +V       IQF++G +E  VP+VRLT+S+DG+NG A F F +P VF++    GDIT
Sbjct: 29  RSVVVRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDIT 88

Query: 161 GFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 220
           G ++ DEEG + +VDVNAKF+NGKP GIEA+YVM+T  +W+RFMRFMERY+  NGL F K
Sbjct: 89  GMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSK 147

Query: 221 K 222
           K
Sbjct: 149 K 147

[Close]
BLAST of CmaCh08G000440 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 157/211 (74.41%), Postives = 172/211 (81.52%), Query Frame = 1 

Query: 21  SLSLSLSLVSPSLHYPC-----VSMATLQSLAST-----PHLHHPSSTKVFASATLHRSA 80
           S S S S  S S  +PC      SMA+LQSLAST     PHL HPSSTK   S +LH SA
Sbjct: 170 SSSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSA 229

Query: 81  FSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLT 140
           FS+F+GRSLS+S  KC TL RR      R  NPI+M++  PKIQFIQGTDEQT+PDVRLT
Sbjct: 230 FSSFHGRSLSLSTTKCHTLTRRTYRQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLT 289

Query: 141 KSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEA 200
           KSRDGTNGMAIF+F++PSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEA
Sbjct: 290 KSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEA 349

Query: 201 KYVMRTPREWDRFMRFMERYSNANGLQFVKK 222
           KYVMRTPREWDRFMRFMERYSNANG+QFVKK
Sbjct: 350 KYVMRTPREWDRFMRFMERYSNANGMQFVKK 376

[Close]
BLAST of CmaCh08G000440 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.7e-62
Identity = 133/189 (70.37%), Postives = 148/189 (78.31%), Query Frame = 1 

Query: 40  MATLQSLA-----STPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTL--GRR 99
           MATLQSLA     S   L+ P S     S   HRSA S F G+SL V+  +        +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 100 RCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDS 159
           RC       +PIVMM V+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FD+PSVFDS
Sbjct: 61  RC-------SPIVMM-VKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDS 120

Query: 160 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 219
           S+EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN
Sbjct: 121 SSEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSN 180

Query: 220 ANGLQFVKK 222
            NGLQF+KK
Sbjct: 181 ENGLQFIKK 181

[Close]
BLAST of CmaCh08G000440 vs. TrEMBL
Match: M1AG88_SOLTU (Photosystem II reaction center Psb28 protein OS=Solanum tuberosum GN=PGSC0003DMG400008585 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 126/185 (68.11%), Postives = 147/185 (79.46%), Query Frame = 1 

Query: 40  MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCE 99
           MATLQSLA +P L    H P S    AS  +H+SA S+F G+ L +S  +  T       
Sbjct: 1   MATLQSLAFSPALSHTSHQPRSLLGIASRIVHQSAGSSFNGQRLCLSRSRFST------N 60

Query: 100 AHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 159
              +  + + +MMVQPKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD+PSVFDSS E
Sbjct: 61  IKNQKMSRLCIMMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDQPSVFDSSGE 120

Query: 160 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 219
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAGIEAKY+MRTPR+WDRFMRFMERY+N+NG
Sbjct: 121 VGDITGFYMIDEEGVLTSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANSNG 179

Query: 220 LQFVK 221
           LQFVK
Sbjct: 181 LQFVK 179

[Close]
BLAST of CmaCh08G000440 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 1 

Query: 40  MATLQSLA-----STPHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTL--GRR 99
           MATLQSLA     S   L+ P S     S   HRSA S F G+SL V+  +        +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGIPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 100 RCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDS 159
           RC       +PIVMM V+PKIQFIQGTDEQT PDVRLTKSRDGTNGMAIF+FD+PSVFDS
Sbjct: 61  RC-------SPIVMM-VKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDS 120

Query: 160 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 219
           S+EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN
Sbjct: 121 SSEVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSN 180

Query: 220 ANGLQFVKK 222
            NGLQF+KK
Sbjct: 181 ENGLQFIKK 181

[Close]
BLAST of CmaCh08G000440 vs. TrEMBL
Match: K4CU78_SOLLC (Photosystem II reaction center Psb28 protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 124/185 (67.03%), Postives = 148/185 (80.00%), Query Frame = 1 

Query: 40  MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCE 99
           MATLQSLA +P L    H P S    AS  +H+S+ S+F G+ L +S  +  T      +
Sbjct: 1   MATLQSLAFSPALSHTTHQPRSLLGIASRIVHQSSGSSFNGQRLCLSRSRFAT------D 60

Query: 100 AHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 159
              +  + + ++MVQPKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD+PSVFDSS E
Sbjct: 61  IQNKKMSRLCIVMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDQPSVFDSSGE 120

Query: 160 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 219
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAGIEAKY+MRTPR+WDRFMRFMERY+N+NG
Sbjct: 121 VGDITGFYMIDEEGVLTSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANSNG 179

Query: 220 LQFVK 221
           LQFVK
Sbjct: 181 LQFVK 179

[Close]
BLAST of CmaCh08G000440 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-52
Identity = 93/124 (75.00%), Postives = 111/124 (89.52%), Query Frame = 1 

Query: 99  RPRNPI-VMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAEVG 158
           RP  P+ + MMV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FD+PSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 159 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 218
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 219 FVKK 222
           FVKK
Sbjct: 194 FVKK 197

[Close]
BLAST of CmaCh08G000440 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.6e-77
Identity = 161/215 (74.88%), Postives = 177/215 (82.33%), Query Frame = 1 

Query: 12  SNHTILPFISLSLSLSLVSPSLHYPCVSMATLQSLAST-----PHLHHPSSTKVFASATL 71
           +NHTILPF S S S S   P   +   SMA+LQSLAST     PHL HPSSTK   S +L
Sbjct: 16  TNHTILPFSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSL 75

Query: 72  HRSAFSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPD 131
           H SAFS+F+GRSLS+S  KC TL RR      R  NPI+M++  PKIQFIQGTDEQT+PD
Sbjct: 76  HSSAFSSFHGRSLSLSTTKCHTLTRRTYRQ--RSWNPILMVL--PKIQFIQGTDEQTIPD 135

Query: 132 VRLTKSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPA 191
           VRLTKSRDGTNGMAIF+F++PSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKFINGKPA
Sbjct: 136 VRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPA 195

Query: 192 GIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK 222
           GIEAKYVMRTPREWDRFMRFMERYSNANG+QFVKK
Sbjct: 196 GIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK 226

[Close]
BLAST of CmaCh08G000440 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 2.0e-75
Identity = 155/187 (82.89%), Postives = 164/187 (87.70%), Query Frame = 1 

Query: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99
           MA+LQSLAST     PHL HPSSTK+  S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159
               RP NPI  +MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+FD+PSVFDSSA
Sbjct: 61  RQ--RPWNPI--LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120

Query: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219
           EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 220 GLQFVKK 222
           GLQFVKK
Sbjct: 181 GLQFVKK 183

[Close]
BLAST of CmaCh08G000440 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 2.4e-73
Identity = 157/211 (74.41%), Postives = 172/211 (81.52%), Query Frame = 1 

Query: 21  SLSLSLSLVSPSLHYPC-----VSMATLQSLAST-----PHLHHPSSTKVFASATLHRSA 80
           S S S S  S S  +PC      SMA+LQSLAST     PHL HPSSTK   S +LH SA
Sbjct: 170 SSSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSA 229

Query: 81  FSAFYGRSLSVSGGKCQTLGRRRCEAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLT 140
           FS+F+GRSLS+S  KC TL RR      R  NPI+M++  PKIQFIQGTDEQT+PDVRLT
Sbjct: 230 FSSFHGRSLSLSTTKCHTLTRRTYRQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLT 289

Query: 141 KSRDGTNGMAIFKFDEPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEA 200
           KSRDGTNGMAIF+F++PSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEA
Sbjct: 290 KSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEA 349

Query: 201 KYVMRTPREWDRFMRFMERYSNANGLQFVKK 222
           KYVMRTPREWDRFMRFMERYSNANG+QFVKK
Sbjct: 350 KYVMRTPREWDRFMRFMERYSNANGMQFVKK 376

[Close]
BLAST of CmaCh08G000440 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 3.5e-72
Identity = 148/187 (79.14%), Postives = 162/187 (86.63%), Query Frame = 1 

Query: 40  MATLQSLAST-----PHLHHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRC 99
           MA+LQSLAST     PHL HPSSTK   S +LH SAFS+F+GRSLS+S  KC TL RR  
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 100 EAHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSA 159
               R  NPI+M++  PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+F++PSVFDSSA
Sbjct: 61  RQ--RSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 120

Query: 160 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 219
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 121 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180

Query: 220 GLQFVKK 222
           G+QFVKK
Sbjct: 181 GMQFVKK 183

[Close]
BLAST of CmaCh08G000440 vs. NCBI nr
Match: gi|697125451|ref|XP_009616744.1| (PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule:MF_01370} [Nicotiana tomentosiformis])

HSP 1 Score: 247.3 bits (630), Expect = 2.5e-62
Identity = 128/185 (69.19%), Postives = 145/185 (78.38%), Query Frame = 1 

Query: 40  MATLQSLASTPHL----HHPSSTKVFASATLHRSAFSAFYGRSLSVSGGKCQTLGRRRCE 99
           MATLQSLA +P L    H P S    AS  +H+SA S+F G+ L      C T  R    
Sbjct: 1   MATLQSLAFSPALSHSSHQPRSLLGIASGVVHQSAGSSFNGQRL------CLTRSRFASN 60

Query: 100 AHGRPRNPIVMMMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFDEPSVFDSSAE 159
              +  + + +MMVQPKIQFIQGTDEQT+PDV+LTKSRDGTNGMAIF+FD PSVFDSS E
Sbjct: 61  IQNQKMSRLSIMMVQPKIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFRFDNPSVFDSSGE 120

Query: 160 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 219
           VGDITGFYMIDEEGV+ SVDVNAKF+NGKPAG+EAKY+MRTPREWDRFMRFMERY+NANG
Sbjct: 121 VGDITGFYMIDEEGVLSSVDVNAKFVNGKPAGVEAKYIMRTPREWDRFMRFMERYANANG 179

Query: 220 LQFVK 221
           LQFVK
Sbjct: 181 LQFVK 179

The following BLAST results are available for this feature:
BLAST of CmaCh08G000440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSB28_ORYSJ1.6e-5673.38Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs... [more]
PSB28_ARATH1.2e-5157.45Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali... [more]
PSB28_ODOSI1.7e-3458.41Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3... [more]
PSB28_PHATC3.8e-3456.64Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai... [more]
PSB28_OSTTA5.0e-3456.20Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus taur... [more]
BLAST of CmaCh08G000440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9C2_CUCSA1.7e-7374.41Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ... [more]
A0A0B0MPB9_GOSAR6.7e-6270.37Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079... [more]
M1AG88_SOLTU1.5e-6168.11Photosystem II reaction center Psb28 protein OS=Solanum tuberosum GN=PGSC0003DMG... [more]
A0A0D2QS78_GOSRA1.5e-6170.37Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G... [more]
K4CU78_SOLLC4.3e-6167.03Photosystem II reaction center Psb28 protein OS=Solanum lycopersicum PE=3 SV=1[more]
BLAST of CmaCh08G000440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28660.21.9e-5275.00 photosystem II reaction center PSB28 protein[more]
BLAST of CmaCh08G000440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778711592|ref|XP_011656764.1|1.6e-7774.88PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X... [more]
gi|659120023|ref|XP_008459971.1|2.0e-7582.89PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ... [more]
gi|700191166|gb|KGN46370.1|2.4e-7374.41hypothetical protein Csa_6G087980 [Cucumis sativus][more]
gi|778711596|ref|XP_011656765.1|3.5e-7279.14PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati... [more]
gi|697125451|ref|XP_009616744.1|2.5e-6269.19PREDICTED: photosystem II reaction center Psb28 protein {ECO:0000255|HAMAP-Rule:... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005610PSII_Psb28_class-1
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G000440.1CmaCh08G000440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005610Photosystem II Psb28, class 1PRODOMPD012692coord: 114..213
score: 2.0
IPR005610Photosystem II Psb28, class 1HAMAPMF_01370PSII_Psb28coord: 110..219
score: 30
IPR005610Photosystem II Psb28, class 1PFAMPF03912Psb28coord: 113..218
score: 5.6
IPR005610Photosystem II Psb28, class 1TIGRFAMsTIGR03047TIGR03047coord: 113..219
score: 7.3
NoneNo IPR availablePANTHERPTHR34963FAMILY NOT NAMEDcoord: 41..221
score: 1.5E
NoneNo IPR availablePANTHERPTHR34963:SF2PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTICcoord: 41..221
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh08G000440Cucsa.348850Cucumber (Gy14) v1cgycmaB0955
CmaCh08G000440Cla007062Watermelon (97103) v1cmawmB879
CmaCh08G000440Csa6G087980Cucumber (Chinese Long) v2cmacuB903
CmaCh08G000440MELO3C022393Melon (DHL92) v3.5.1cmameB817
CmaCh08G000440ClCG06G001400Watermelon (Charleston Gray)cmawcgB805
CmaCh08G000440CSPI06G06970Wild cucumber (PI 183967)cmacpiB923
CmaCh08G000440CmoCh08G000440Cucurbita moschata (Rifu)cmacmoB913
CmaCh08G000440CmoCh17G013240Cucurbita moschata (Rifu)cmacmoB899
CmaCh08G000440Lsi09G018010Bottle gourd (USVL1VR-Ls)cmalsiB812
CmaCh08G000440Cp4.1LG12g10160Cucurbita pepo (Zucchini)cmacpeB905
CmaCh08G000440Cp4.1LG17g09650Cucurbita pepo (Zucchini)cmacpeB914
CmaCh08G000440MELO3C022393.2Melon (DHL92) v3.6.1cmamedB915
CmaCh08G000440Bhi12G002083Wax gourdcmawgoB1096
CmaCh08G000440CsGy6G006990Cucumber (Gy14) v2cgybcmaB871
CmaCh08G000440Carg11538Silver-seed gourdcarcmaB0023
CmaCh08G000440Carg03787Silver-seed gourdcarcmaB1361
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G000440CmaCh17G013700Cucurbita maxima (Rimu)cmacmaB384
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh08G000440Silver-seed gourdcarcmaB1090
CmaCh08G000440Cucumber (Chinese Long) v3cmacucB1072
CmaCh08G000440Watermelon (97103) v2cmawmbB922
CmaCh08G000440Cucurbita maxima (Rimu)cmacmaB466
CmaCh08G000440Watermelon (Charleston Gray)cmawcgB810
CmaCh08G000440Bottle gourd (USVL1VR-Ls)cmalsiB837
CmaCh08G000440Cucumber (Gy14) v2cgybcmaB457
CmaCh08G000440Melon (DHL92) v3.6.1cmamedB936