Lsi09G018010.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G018010.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Photosystem II reaction center Psb28 protein
Location	chr09 : 26750835 .. 26751990 (+)
Sequence length	1092

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGGTAACTCTATCACTTTCTCCATTGTATTCCCCCTTTTCCAACCCCTAATTCTCCCCCTCTTCAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

mRNA sequence

AATTGAAAGTTGGGGTTTTAGTAGTTTCATTAGTGATTGGTGATTGGTGAATGGAAGTTCTTGAAAAGTGAATGGTTGTGGTGAATACACACCTCTTTCCCAATCTTCACAAACCACACCATTCTCTCTTCTTCTTCTTCTTCTTCCTTTCTTTTATCTCTCTCTGCTGCTGCTTCCTTTCAATTCAAAGCAAAATCAATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGAAGTTCGTGTAATCGGAATTCGAATCCGGTTTCTGCTTCTGTTTTGCCCAATTTTGTTTTGCGTTTGAATCGAAGATCAATACTGTGTTGATTGATTGATGCCTGATGGATGAAGATTTAATTGAAACTTTGTGTTCTATGTTCTATCCCCTCTCCCCTTCTTCAACCAAACCAAGCATGAGTAGTTCACAGTCTGAAACACAAGAAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTTGGTAGAAGAATTGAGAATTGGATTTTAATTCAATGAACACTGAGTTGAATTTCATGTTTTTTTGGTAGAAGAACTGAGAATTGGATTTTAATT

Coding sequence (CDS)

ATGGCGACTCTGCAATCTCTCGCATCCACTTCCCCTGCTTCTCCCCATCTGCATCATCCTTCTTCCACCAAAGCAGCTTTTCCCTCCGCCACATTCCACCGCAGCTCCTTCTCCGCATTCCACGGCCGCTCTCTTTGCCTCTCCGCCGGAAACTGCCAGACGCTCACTCGCCGCAGATGCGAAGCCTACGGACGGCCGTGGAACCCCATCCTGATGGTTCAACCGAAGATTCAGTTCATCCAGGGCACAGACGAGCAGACGGTGCCGGACGTGAGGCTGACGAAATCCCGAGACGGCACGAACGGAATGGCGATTTTCAGGTTCGATCAACCGTCGGTGTTCGATTCGTCGGCGGAGGTAGGAGATATCACGGGATTCTACATGATTGATGAGGAAGGAGTGATTCAGTCGGTGGATGTGAATGCGAAGTTCATCAATGGAAAACCGGCGGGAATCGAAGCGAAGTATGTGATGCGGACGCCGAGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCCAACGCCAATGGCTTGCAATTCGTCAAGAAATGA

Protein sequence

MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKK

Homology

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BLAST of Lsi09G018010.1 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 8.1e-54
Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 1


Query: 2   ATLQSLASTSPASPHLHH---PSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRR 61
           A +++LA  SP S        P+ +    PS + H    S+F G SL        +L R 
Sbjct: 3   AVMKALAVASPISARAQPRRCPAGSSGG-PSQSLH----SSFGGVSLQCRRTKPASLHR- 62

Query: 62  RCEAYGRPWNPILMV--QPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDS 121
                 RP   ++M+  +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF FDQPSVFDS
Sbjct: 63  -----SRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDS 122

Query: 122 SAEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSN 181
           SAE+GDITGFYMID+EGV+QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS 
Sbjct: 123 SAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQ 180

Query: 182 ANGLQFVKK 186
           ANGLQFVKK
Sbjct: 183 ANGLQFVKK 180

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BLAST of Lsi09G018010.1 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.9e-51
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 59  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 118

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 119 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 178

Query: 185 FVKK 186
           FVKK
Sbjct: 179 FVKK 182

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BLAST of Lsi09G018010.1 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-35
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF  P++ D S+A+ G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NGL F K
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

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BLAST of Lsi09G018010.1 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.4e-35
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 73  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFD-SSAEVGDITGFYMIDE 132
           ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF  P++ D ++A+ G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 133 EGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
           EG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NGL F K
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

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BLAST of Lsi09G018010.1 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.4e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 77  IQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV-GDITGFYMIDEEGVI 136
           IQFIQG +E  +PDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 137 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK 185
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NGL F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

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BLAST of Lsi09G018010.1 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 9.5e-78
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 253

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 254 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 313

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 314 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 373

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 374 MQFVKK 376

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BLAST of Lsi09G018010.1 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 129/187 (68.98%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

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BLAST of Lsi09G018010.1 vs. TrEMBL
Match: B9GRD0_POPTR (Photosystem II reaction center Psb28 protein OS=Populus trichocarpa GN=POPTR_0002s25810g PE=3 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 129/185 (69.73%), Postives = 147/185 (79.46%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLA  SP + HL H + + +   S   ++SS+S F+G+SLCL       L RR+ 
Sbjct: 1   MATLQSLALASPVAQHLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLP-LIRRKL 60

Query: 61  EAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120
              G      +MV+P IQF+QG DEQTVPDVRLTKSRDGTNGMAIF FDQPSVFDSSAEV
Sbjct: 61  RTSGLV---TMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEV 120

Query: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180
           GDITGFYMIDEEG++QSVDVNAKF+NGKP  IEAKY+MRTPREWDRFMRFMERY+NANGL
Sbjct: 121 GDITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMERYANANGL 180

Query: 181 QFVKK 186
           QFVKK
Sbjct: 181 QFVKK 181

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BLAST of Lsi09G018010.1 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-62
Identity = 129/187 (68.98%), Postives = 146/187 (78.07%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGIPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

[Close]

BLAST of Lsi09G018010.1 vs. TrEMBL
Match: A9PHJ0_POPTR (Photosystem II reaction center Psb28 protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 128/185 (69.19%), Postives = 147/185 (79.46%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRRC 60
           MATLQSLA  SP + HL H + + +   S   ++SS+S F+G+SLCL       L RR+ 
Sbjct: 1   MATLQSLALASPVAQHLQHQTRSFSGSGSWAVNKSSYSLFNGQSLCLPRLRLP-LIRRKL 60

Query: 61  EAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEV 120
              G      +MV+P IQF+QG DEQTVPDVRLTKSRDGTNGMAIF FDQPSVFDSSAEV
Sbjct: 61  RTSGLV---TMMVKPAIQFVQGADEQTVPDVRLTKSRDGTNGMAIFTFDQPSVFDSSAEV 120

Query: 121 GDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGL 180
           GDITGFYMIDEEG++QSVDVNAKF+NGKP  IEAKY+MRTPREWDRFMRFME+Y+NANGL
Sbjct: 121 GDITGFYMIDEEGILQSVDVNAKFVNGKPERIEAKYIMRTPREWDRFMRFMEKYANANGL 180

Query: 181 QFVKK 186
           QFVKK
Sbjct: 181 QFVKK 181

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BLAST of Lsi09G018010.1 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-52
Identity = 93/124 (75.00%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 65  RPWNPI---LMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVG 124
           RP  P+   +MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F FDQPSVFDSS EVG
Sbjct: 74  RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVG 133

Query: 125 DITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQ 184
           +ITG YMIDEEGVIQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQ
Sbjct: 134 EITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQ 193

Query: 185 FVKK 186
           FVKK
Sbjct: 194 FVKK 197

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BLAST of Lsi09G018010.1 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 1.7e-80
Identity = 161/186 (86.56%), Postives = 166/186 (89.25%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE
Sbjct: 61  YRQ--RPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180

Query: 181 LQFVKK 186
           LQFVKK
Sbjct: 181 LQFVKK 183

[Close]

BLAST of Lsi09G018010.1 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 103

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 104 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 163

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 164 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 223

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 224 MQFVKK 226

[Close]

BLAST of Lsi09G018010.1 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 60

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 61  YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 120

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 121 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 181 MQFVKK 183

[Close]

BLAST of Lsi09G018010.1 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1


Query: 1   MATLQSLAST-SPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTLTRRR 60
           MA+LQSLAST SP+SPHL HPSSTK    S + H S+FS+FHGRSL LS   C TLTRR 
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKL-SYSLHSSAFSSFHGRSLSLSTTKCHTLTRRT 253

Query: 61  CEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAE 120
                R WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAE
Sbjct: 254 YRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 313

Query: 121 VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG
Sbjct: 314 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 373

Query: 181 LQFVKK 186
           +QFVKK
Sbjct: 374 MQFVKK 376

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BLAST of Lsi09G018010.1 vs. NCBI nr
Match: gi|728813701|gb|KHG01299.1| (Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum])

HSP 1 Score: 248.8 bits (634), Expect = 7.3e-63
Identity = 129/187 (68.98%), Postives = 147/187 (78.61%), Query Frame = 1


Query: 1   MATLQSLASTSPASPHLHHPSSTKAAFPSATFHRSSFSAFHGRSLCLSAGNCQTL--TRR 60
           MATLQSLA  SP S    +   + +  PS   HRS+ S F+G+SL ++           +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSRISPTRWNSK 60

Query: 61  RCEAYGRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSA 120
           RC         ++MV+PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRFDQPSVFDSS+
Sbjct: 61  RCSPI------VMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 120

Query: 121 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEGV+QSVDVNAKF+NGKPAGIEAKY+MRTPREWDRFMRFMERYSN N
Sbjct: 121 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 181 GLQFVKK 186
           GLQF+KK
Sbjct: 181 GLQFIKK 181

The following BLAST results are available for this feature:

BLAST of Lsi09G018010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB28_ORYSJ	8.1e-54	63.49	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
PSB28_ARATH	4.9e-51	75.00	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
PSB28_ODOSI	3.8e-35	59.29	Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3...	[more]
PSB28_PHATC	8.4e-35	57.52	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
PSB28_GUITH	5.4e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 S...	[more]

BLAST of Lsi09G018010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C2_CUCSA	9.5e-78	83.33	Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ...	[more]
A0A0B0MPB9_GOSAR	5.1e-63	68.98	Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079...	[more]
B9GRD0_POPTR	1.1e-62	69.73	Photosystem II reaction center Psb28 protein OS=Populus trichocarpa GN=POPTR_000...	[more]
A0A0D2QS78_GOSRA	1.1e-62	68.98	Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G...	[more]
A9PHJ0_POPTR	2.5e-62	69.19	Photosystem II reaction center Psb28 protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of Lsi09G018010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28660.2	2.8e-52	75.00	photosystem II reaction center PSB28 protein	[more]

BLAST of Lsi09G018010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120023\|ref\|XP_008459971.1\|	1.7e-80	86.56	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
gi\|778711592\|ref\|XP_011656764.1\|	1.4e-77	83.33	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X...	[more]
gi\|778711596\|ref\|XP_011656765.1\|	1.4e-77	83.33	PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati...	[more]
gi\|700191166\|gb\|KGN46370.1\|	1.4e-77	83.33	hypothetical protein Csa_6G087980 [Cucumis sativus]	[more]
gi\|728813701\|gb\|KHG01299.1\|	7.3e-63	68.98	Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009654	photosystem II oxygen evolving complex
GO:0009523	photosystem II

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR005610	PSII_Psb28_class-1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G018010	Lsi09G018010	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G018010.1.five_prime_UTR.1	Lsi09G018010.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G018010.1.CDS.1	Lsi09G018010.1.CDS.1	CDS
Lsi09G018010.1.CDS.2	Lsi09G018010.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G018010.1.three_prime_UTR.1	Lsi09G018010.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G018010.1	Lsi09G018010.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 78..177 score: 4.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 74..183 score: 30
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 77..182 score: 2.1
IPR005610	Photosystem II Psb28, class 1	TIGRFAMs	TIGR03047	TIGR03047	coord: 77..183 score: 2.5
None	No IPR available	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 2..185 score: 2.7E
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 2..185 score: 2.7E