Lsi09G016500 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAt2g46730/F19D11.1
Locationchr09 : 24815638 .. 24816126 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTGCCTCCTCCACCTCACCAAGCCCGTCCTGCCGCTGCCTCCCGATCACAACCAGGCCACCTTCGACACCTCCGGTCTCCGCCGTCTACGCAAAGTCCCAGCCACCCAGAACCGACGCCGAAAACACCACACCAAACAACAGTAGCACCATCAAAAGCTTTGGCCACAAAATTCTCTCAGCCGTGAACTCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACGACCCCAAAACAGAAATCGCAACCGGAGACTACCCAAATTAGTGGCTCCGATGTCCTGAGGGCGCTGCAGAAGGCGGCTGCTGTGAAAGAGAAGAACAGAACCCGACAAGTTAAAGAGAAGAAGAAAGAAGAGAACGACGCTGAGAATTCTGATATGAATCATAGAGTGAGGCCTCTGAAGATCAAGAGCGATTGGGGATTGAAGCTCACCCAATTGGAAAAACGCCTTCAGGAAATCTCTGAGCCGGTTTGA

mRNA sequence

ATGTGGGCTGCCTCCTCCACCTCACCAAGCCCGTCCTGCCGCTGCCTCCCGATCACAACCAGGCCACCTTCGACACCTCCGGTCTCCGCCGTCTACGCAAAGTCCCAGCCACCCAGAACCGACGCCGAAAACACCACACCAAACAACAGTAGCACCATCAAAAGCTTTGGCCACAAAATTCTCTCAGCCGTGAACTCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACGACCCCAAAACAGAAATCGCAACCGGAGACTACCCAAATTAGTGGCTCCGATGTCCTGAGGGCGCTGCAGAAGGCGGCTGCTGTGAAAGAGAAGAACAGAACCCGACAAGTTAAAGAGAAGAAGAAAGAAGAGAACGACGCTGAGAATTCTGATATGAATCATAGAGTGAGGCCTCTGAAGATCAAGAGCGATTGGGGATTGAAGCTCACCCAATTGGAAAAACGCCTTCAGGAAATCTCTGAGCCGGTTTGA

Coding sequence (CDS)

ATGTGGGCTGCCTCCTCCACCTCACCAAGCCCGTCCTGCCGCTGCCTCCCGATCACAACCAGGCCACCTTCGACACCTCCGGTCTCCGCCGTCTACGCAAAGTCCCAGCCACCCAGAACCGACGCCGAAAACACCACACCAAACAACAGTAGCACCATCAAAAGCTTTGGCCACAAAATTCTCTCAGCCGTGAACTCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACGACCCCAAAACAGAAATCGCAACCGGAGACTACCCAAATTAGTGGCTCCGATGTCCTGAGGGCGCTGCAGAAGGCGGCTGCTGTGAAAGAGAAGAACAGAACCCGACAAGTTAAAGAGAAGAAGAAAGAAGAGAACGACGCTGAGAATTCTGATATGAATCATAGAGTGAGGCCTCTGAAGATCAAGAGCGATTGGGGATTGAAGCTCACCCAATTGGAAAAACGCCTTCAGGAAATCTCTGAGCCGGTTTGA

Protein sequence

MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQVKEKKKEENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
Homology
[Close]
BLAST of Lsi09G016500 vs. TrEMBL
Match: A0A0A0KCJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.1e-49
Identity = 120/166 (72.29%), Postives = 129/166 (77.71%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKI 60
           MWAASSTSP PSC  L ITT  P TPP+S   A SQP  TDAEN  PNNSS+IK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQVKEKK 120
           LSAVNSP PKSL    NQTTPK +S PE  QISGSDVLRALQKAAAVKEK RT+QVKEKK
Sbjct: 61  LSAVNSPTPKSL----NQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 120

Query: 121 KEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV 163
           K++  A      S+MNHRVRPLKI  DWGL+LTQLEKRL EIS+PV
Sbjct: 121 KKKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

[Close]
BLAST of Lsi09G016500 vs. TrEMBL
Match: M5XRM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-09
Identity = 70/182 (38.46%), Postives = 92/182 (50.55%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPIT---TRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFG 60
           MWA S  SP P+  C P+     RPP      +V AKSQPP  D           +   G
Sbjct: 1   MWAVSYLSP-PTPPCHPLVRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGGLG 60

Query: 61  HKILSAVNSPNPKSLNPNPNQTTPKQK---SQPETTQISGSDVLRALQKAAAVKEKNRTR 120
           H IL+ + S N K   P  ++   KQK   +Q     ISGSDVL ALQKAA  K    +R
Sbjct: 61  HSILTKLKS-NHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKK----SR 120

Query: 121 QVKEKKKEEN--------------DAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISE 163
           ++ +KKK+ N              + E  D + +VRPL +KS+WG +L +LEKR QE+S 
Sbjct: 121 EIGKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELSS 165

[Close]
BLAST of Lsi09G016500 vs. NCBI nr
Match: gi|659119605|ref|XP_008459744.1| (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 4.6e-53
Identity = 125/166 (75.30%), Postives = 135/166 (81.33%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKI 60
           MWAASSTSPSPS R LPITT PP   PVS  YAKS PP+ DAENT PNNS TIKSFGHKI
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60

Query: 61  LSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQVKEKK 120
           LSAVNSP P+SL    NQTTPK +SQPE  QISGSDVLRALQKAAAVKEKNRT+QVKEKK
Sbjct: 61  LSAVNSPTPQSL----NQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKK 120

Query: 121 KEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP 162
           K++ +        S+MNHRVRPLKIK DWGL+LTQLEKRL E+SEP
Sbjct: 121 KKKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSEP 162

[Close]
BLAST of Lsi09G016500 vs. NCBI nr
Match: gi|778712168|ref|XP_011656857.1| (PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 120/166 (72.29%), Postives = 129/166 (77.71%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKI 60
           MWAASSTSP PSC  L ITT  P TPP+S   A SQP  TDAEN  PNNSS+IK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQVKEKK 120
           LSAVNSP PKSL    NQTTPK +S PE  QISGSDVLRALQKAAAVKEK RT+QVKEKK
Sbjct: 61  LSAVNSPTPKSL----NQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 120

Query: 121 KEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV 163
           K++  A      S+MNHRVRPLKI  DWGL+LTQLEKRL EIS+PV
Sbjct: 121 KKKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

[Close]
BLAST of Lsi09G016500 vs. NCBI nr
Match: gi|596049264|ref|XP_007220476.1| (hypothetical protein PRUPE_ppa012518mg [Prunus persica])

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-09
Identity = 70/182 (38.46%), Postives = 92/182 (50.55%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPIT---TRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFG 60
           MWA S  SP P+  C P+     RPP      +V AKSQPP  D           +   G
Sbjct: 1   MWAVSYLSP-PTPPCHPLVRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGGLG 60

Query: 61  HKILSAVNSPNPKSLNPNPNQTTPKQK---SQPETTQISGSDVLRALQKAAAVKEKNRTR 120
           H IL+ + S N K   P  ++   KQK   +Q     ISGSDVL ALQKAA  K    +R
Sbjct: 61  HSILTKLKS-NHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKK----SR 120

Query: 121 QVKEKKKEEN--------------DAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISE 163
           ++ +KKK+ N              + E  D + +VRPL +KS+WG +L +LEKR QE+S 
Sbjct: 121 EIGKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELSS 165

[Close]
BLAST of Lsi09G016500 vs. NCBI nr
Match: gi|658019473|ref|XP_008345091.1| (PREDICTED: protein SCARECROW 1-like [Malus domestica])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 61/170 (35.88%), Postives = 88/170 (51.76%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPITTRPPSTPPVS-AVYAKSQPPRTDAENTTPNNSSTIKSFGHK 60
           MWA S   P P  +  P+  +PP T P+  ++ AKSQPP  D           +   G  
Sbjct: 1   MWAVSYPPPPPPSQ--PLIPKPPPTYPIRLSIVAKSQPPSQD-----------LXGLGRS 60

Query: 61  ILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQVKEK 120
           IL+ + S      NPNP     +++ + +   ISGSDVL A+Q+AAA  +KNR    K+K
Sbjct: 61  ILTKLKS------NPNPKLQGKQKQDEEDKKVISGSDVLSAMQRAAA--KKNRESVKKKK 120

Query: 121 KKEENDAENSDMNHR----------VRPLKIKSDWGLKLTQLEKRLQEIS 160
           K   + + +   +HR          VRPL +KS+WG +L +L KRL E+S
Sbjct: 121 KAPPSSSSSYAGSHREEEGVDEYGNVRPLCVKSEWGSRLDELGKRLXELS 149

[Close]
BLAST of Lsi09G016500 vs. NCBI nr
Match: gi|645254492|ref|XP_008233064.1| (PREDICTED: uncharacterized protein LOC103332144 [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 4.5e-08
Identity = 68/180 (37.78%), Postives = 91/180 (50.56%), Query Frame = 1 

Query: 1   MWAASSTSPSPSCRCLPIT---TRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFG 60
           MWA S   P P+  C P+     +PP      +V AKSQPP  D           +   G
Sbjct: 1   MWAVSYLPP-PTPPCHPLVRNLNKPPLNLKSLSVSAKSQPPGQD-----------LGGLG 60

Query: 61  HKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQ-ISGSDVLRALQKAAAVKEKNRTRQV 120
           H IL+ + S N K   P  ++   KQ+   E  Q ISGSDVL ALQKAA  K    +R++
Sbjct: 61  HSILTKLKS-NHKPTTPILSKQKQKQRQNQEGKQMISGSDVLFALQKAADKK----SREI 120

Query: 121 KEKKKEEN--------------DAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV 163
            +KKK+ N              + E  D + +VRPL +KS+WG +L +LEKR QE+S  V
Sbjct: 121 GKKKKKANVSSSSSSSYLGSHGEEEGVDEDVKVRPLCVKSEWGDRLDELEKRCQELSSKV 163

The following BLAST results are available for this feature:
BLAST of Lsi09G016500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G016500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCJ8_CUCSA8.1e-4972.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1[more]
M5XRM4_PRUPE6.3e-0938.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1[more]
BLAST of Lsi09G016500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G016500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119605|ref|XP_008459744.1|4.6e-5375.30PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo][more]
gi|778712168|ref|XP_011656857.1|1.2e-4872.29PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus][more]
gi|596049264|ref|XP_007220476.1|9.0e-0938.46hypothetical protein PRUPE_ppa012518mg [Prunus persica][more]
gi|658019473|ref|XP_008345091.1|1.5e-0835.88PREDICTED: protein SCARECROW 1-like [Malus domestica][more]
gi|645254492|ref|XP_008233064.1|4.5e-0837.78PREDICTED: uncharacterized protein LOC103332144 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016500.1Lsi09G016500.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37728FAMILY NOT NAMEDcoord: 78..162
score: 2.8
NoneNo IPR availablePANTHERPTHR37728:SF1SUBFAMILY NOT NAMEDcoord: 78..162
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G016500Csa6G107890Cucumber (Chinese Long) v2culsiB398
Lsi09G016500CSPI06G08540Wild cucumber (PI 183967)cpilsiB401
Lsi09G016500Cucsa.120850Cucumber (Gy14) v1cgylsiB171
Lsi09G016500CmaCh17G005060Cucurbita maxima (Rimu)cmalsiB331
Lsi09G016500CmoCh17G004770Cucurbita moschata (Rifu)cmolsiB320
Lsi09G016500Cla006695Watermelon (97103) v1lsiwmB042
Lsi09G016500MELO3C022252Melon (DHL92) v3.5.1lsimeB018
Lsi09G016500ClCG06G002750Watermelon (Charleston Gray)lsiwcgB026
Lsi09G016500MELO3C022252.2Melon (DHL92) v3.6.1lsimedB020
Lsi09G016500Cla97C06G112110Watermelon (97103) v2lsiwmbB024
Lsi09G016500Cp4.1LG12g04340Cucurbita pepo (Zucchini)cpelsiB105
Lsi09G016500CsGy6G008630Cucumber (Gy14) v2cgyblsiB364
Lsi09G016500Carg26678Silver-seed gourdcarlsiB821
Lsi09G016500CsaV3_6G008920Cucumber (Chinese Long) v3cuclsiB422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G016500Watermelon (97103) v2lsiwmbB026
Lsi09G016500Wax gourdlsiwgoB011
Lsi09G016500Cucumber (Gy14) v1cgylsiB169
Lsi09G016500Cucurbita maxima (Rimu)cmalsiB336
Lsi09G016500Cucurbita maxima (Rimu)cmalsiB817
Lsi09G016500Cucurbita moschata (Rifu)cmolsiB326
Lsi09G016500Cucurbita moschata (Rifu)cmolsiB803
Lsi09G016500Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G016500Cucurbita pepo (Zucchini)cpelsiB248
Lsi09G016500Wild cucumber (PI 183967)cpilsiB404
Lsi09G016500Cucumber (Chinese Long) v2culsiB402
Lsi09G016500Melon (DHL92) v3.5.1lsimeB017
Lsi09G016500Watermelon (Charleston Gray)lsiwcgB029
Lsi09G016500Watermelon (97103) v1lsiwmB036
Lsi09G016500Cucumber (Gy14) v2cgyblsiB366
Lsi09G016500Melon (DHL92) v3.6.1lsimedB019
Lsi09G016500Silver-seed gourdcarlsiB545
Lsi09G016500Silver-seed gourdcarlsiB820
Lsi09G016500Cucumber (Chinese Long) v3cuclsiB424