Csa6G107890 (gene) Cucumber (Chinese Long) v2

NameCsa6G107890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAt2g46730/F19D11.1
LocationChr6 : 7127782 .. 7128515 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTACACGTTTGAACTTGGAGCTTCTCTTTCCTTGGTTGTCTTCACTCCAAACTATGTGGGCTGCCTCTTCCACCTCACCCATCCCCTCCTGCCACCGCCTCACCATCACAACCAGTCGTCCGCCCACCCCTCCGTTATCAGTCTTCTGCGCAATGTCTCAGCCATCCGGAACGGATGCTGAAAACATCAAACCAAACAACAGTAGCAGCATCAAAGGCTTTGGCCACAAAATTCTCTCAGCAGTCAACTCCCCAACTCCCAAATCCCTAAACCAAACGACCCCCAAACACGAATCCCATCCGGAGGCTGCCCAAATTAGTGGGTCCGATGTTCTAAGGGCATTGCAGAAGGCGGCTGCCGTGAAGGAGAAGATCAGAACCCAACAAGTTAAAGAGAAGAAGAAGAAGAAAGAAGGGGCTGCCACCGAAGACAGTCAATCTGAGATGAATCATAGAGTGAGGCCTCTTAAGATCAACAGAGATTGGGGATTGAGGCTCACCCAATTGGAAAAACGCCTTCTGGAAATCTCTGACCCGGTTTGATGATTCTTATTTGAATTGTCATTGATTTGTATATTCATATGTTGTGTTTTATGTAGATTTTAAGTCTCCGTGTGTTCAATTTTCAAGTAAAATGGCAAATCTTTCATATTTTTGGTACTTCACCTTGTTTTCACAACGTTCTGTAAATGATGGGCGATGGGCGTAGTAGTTAGTAAAGAAATGACATTA

mRNA sequence

ATGTGGGCTGCCTCTTCCACCTCACCCATCCCCTCCTGCCACCGCCTCACCATCACAACCAGTCGTCCGCCCACCCCTCCGTTATCAGTCTTCTGCGCAATGTCTCAGCCATCCGGAACGGATGCTGAAAACATCAAACCAAACAACAGTAGCAGCATCAAAGGCTTTGGCCACAAAATTCTCTCAGCAGTCAACTCCCCAACTCCCAAATCCCTAAACCAAACGACCCCCAAACACGAATCCCATCCGGAGGCTGCCCAAATTAGTGGGTCCGATGTTCTAAGGGCATTGCAGAAGGCGGCTGCCGTGAAGGAGAAGATCAGAACCCAACAAGTTAAAGAGAAGAAGAAGAAGAAAGAAGGGGCTGCCACCGAAGACAGTCAATCTGAGATGAATCATAGAGTGAGGCCTCTTAAGATCAACAGAGATTGGGGATTGAGGCTCACCCAATTGGAAAAACGCCTTCTGGAAATCTCTGACCCGGTTTGA

Coding sequence (CDS)

ATGTGGGCTGCCTCTTCCACCTCACCCATCCCCTCCTGCCACCGCCTCACCATCACAACCAGTCGTCCGCCCACCCCTCCGTTATCAGTCTTCTGCGCAATGTCTCAGCCATCCGGAACGGATGCTGAAAACATCAAACCAAACAACAGTAGCAGCATCAAAGGCTTTGGCCACAAAATTCTCTCAGCAGTCAACTCCCCAACTCCCAAATCCCTAAACCAAACGACCCCCAAACACGAATCCCATCCGGAGGCTGCCCAAATTAGTGGGTCCGATGTTCTAAGGGCATTGCAGAAGGCGGCTGCCGTGAAGGAGAAGATCAGAACCCAACAAGTTAAAGAGAAGAAGAAGAAGAAAGAAGGGGCTGCCACCGAAGACAGTCAATCTGAGATGAATCATAGAGTGAGGCCTCTTAAGATCAACAGAGATTGGGGATTGAGGCTCACCCAATTGGAAAAACGCCTTCTGGAAATCTCTGACCCGGTTTGA

Protein sequence

MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKILSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV*
BLAST of Csa6G107890 vs. TrEMBL
Match: A0A0A0KCJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 4.9e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1

Query: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60
           MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE 120
           LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE 120

Query: 121 GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 163
           GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV
Sbjct: 121 GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of Csa6G107890 vs. TrEMBL
Match: M5XRM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 67/180 (37.22%), Postives = 89/180 (49.44%), Query Frame = 1

Query: 1   MWAASSTSP-IPSCHRLTITTSRPPTPPLSV-FCAMSQPSGTDAENIKPNNSSSIKGFGH 60
           MWA S  SP  P CH L    +RPP    S+   A SQP G D           + G GH
Sbjct: 1   MWAVSYLSPPTPPCHPLVRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGGLGH 60

Query: 61  KILSAVNS---PTPKSLNQTTPKHES--HPEAAQ-ISGSDVLRALQKAAAVKEKIRTQQV 120
            IL+ + S   PT   L++   K +   + E  Q ISGSDVL ALQKAA  K +    ++
Sbjct: 61  SILTKLKSNHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKKSR----EI 120

Query: 121 KEKKKKKE----------GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 163
            +KKKK            G+  E+   + + +VRPL +  +WG RL +LEKR  E+S  V
Sbjct: 121 GKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELSSKV 165

BLAST of Csa6G107890 vs. TrEMBL
Match: A0A0K9QN52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_165630 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 57/174 (32.76%), Postives = 77/174 (44.25%), Query Frame = 1

Query: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPN----------NS 60
           MW   ++ P        I T  PPTP LS F  + QP     +  + N          + 
Sbjct: 1   MWVTIASQPF-------IPTPIPPTPFLS-FPKLPQPPTKSVQLRRRNRYPAVVAATVSP 60

Query: 61  SSIKGFGHKILSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQ 120
             I G G  + S + S      N +    +      +ISGSD+LRALQKA+A K   + Q
Sbjct: 61  HDIGGLGQAVFSTLESGPSAGSNPSKKVQQEEKSGKEISGSDILRALQKASAKKASTKKQ 120

Query: 121 QVKEK-----KKKKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEIS 160
           Q K+K     K++K G    D       +VRP+ +  DW  RL  LEKRL E S
Sbjct: 121 QQKKKGSIELKREKNGKKVVDYD-----KVRPITVKSDWATRLDDLEKRLQEFS 161

BLAST of Csa6G107890 vs. TrEMBL
Match: A0A0S3RI86_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G335700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1

Query: 57  GHKILSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 116
           GH +L  + S        +TP  +   +  +ISGSDVL ALQ+A+A K+K R  + KE +
Sbjct: 42  GHTLLGVIRS-------NSTPIPKLAEQEGEISGSDVLWALQRASARKKKNRKNK-KEHR 101

Query: 117 KKKEGAATEDSQSEMNH-RVRPLKINRDWGLRLTQLEKRLLEISDPV 163
           + +   A+   QS  N+  +RPL IN +W  +L  L+KRL E+SD +
Sbjct: 102 RDESSVASLTEQSAANYTNIRPLSINANWAAKLEDLDKRLRELSDTI 140

BLAST of Csa6G107890 vs. TrEMBL
Match: A0A0L9TEX2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan635s006300 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1

Query: 57  GHKILSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 116
           GH +L  + S        +TP  +   +  +ISGSDVL ALQ+A+A K+K R  + KE +
Sbjct: 42  GHTLLGVIRS-------NSTPIPKLAEQEGEISGSDVLWALQRASARKKKNRKNK-KEHR 101

Query: 117 KKKEGAATEDSQSEMNH-RVRPLKINRDWGLRLTQLEKRLLEISDPV 163
           + +   A+   QS  N+  +RPL IN +W  +L  L+KRL E+SD +
Sbjct: 102 RDESSVASLTEQSAANYTNIRPLSINANWAAKLEDLDKRLRELSDTI 140

BLAST of Csa6G107890 vs. TAIR10
Match: AT2G46735.1 (AT2G46735.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08
Identity = 44/151 (29.14%), Postives = 66/151 (43.71%), Query Frame = 1

Query: 26  PPLSVFCAMSQPSGTDAENI---------KPNNSSSIKGFGHKILSAVNSPTPKSLNQTT 85
           P ++   A SQP   + + I         K   S S+ G G +IL       P+      
Sbjct: 17  PTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQILLRTVDSNPR------ 76

Query: 86  PKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK-------KKEGAATEDSQS 145
              +  P+  +ISGSDVL A+Q+A A +++    + K K +          G  T D+  
Sbjct: 77  ---KPIPKETEISGSDVLWAIQRATAQRKRTNAGKKKTKNRLSGVELSSSAGEPTGDNGV 136

Query: 146 EMNHRVRPLKINRDWGLRLTQLEKRLLEISD 161
           + ++ V PL+I  DWG RL + EK L E  +
Sbjct: 137 DYSN-VTPLRIKSDWGHRLEEFEKLLKEFQN 157

BLAST of Csa6G107890 vs. NCBI nr
Match: gi|778712168|ref|XP_011656857.1| (PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 7.0e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1

Query: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60
           MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE 120
           LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKKKKE 120

Query: 121 GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 163
           GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV
Sbjct: 121 GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of Csa6G107890 vs. NCBI nr
Match: gi|659119605|ref|XP_008459744.1| (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-65
Identity = 133/162 (82.10%), Postives = 140/162 (86.42%), Query Frame = 1

Query: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60
           MWAASSTSP PS  RL ITT+ PP  P+S+F A S P   DAEN KPNNS +IK FGHKI
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60

Query: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKE-KKKKK 120
           LSAVNSPTP+SLNQTTPKHES PEA QISGSDVLRALQKAAAVKEK RTQQVKE KKKKK
Sbjct: 61  LSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKKKKK 120

Query: 121 EGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDP 162
           EGAATEDS SEMNHRVRPLKI RDWGLRLTQLEKRLLE+S+P
Sbjct: 121 EGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSEP 162

BLAST of Csa6G107890 vs. NCBI nr
Match: gi|645254492|ref|XP_008233064.1| (PREDICTED: uncharacterized protein LOC103332144 [Prunus mume])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 65/178 (36.52%), Postives = 87/178 (48.88%), Query Frame = 1

Query: 1   MWAASSTSP-IPSCHRLTITTSRPPTPPLSV-FCAMSQPSGTDAENIKPNNSSSIKGFGH 60
           MWA S   P  P CH L    ++PP    S+   A SQP G D           + G GH
Sbjct: 1   MWAVSYLPPPTPPCHPLVRNLNKPPLNLKSLSVSAKSQPPGQD-----------LGGLGH 60

Query: 61  KILSAVNS---PTPKSLNQTTPKHESHPEAAQ-ISGSDVLRALQKAAAVKEKIRTQQVKE 120
            IL+ + S   PT   L++   K   + E  Q ISGSDVL ALQKAA  K +    ++ +
Sbjct: 61  SILTKLKSNHKPTTPILSKQKQKQRQNQEGKQMISGSDVLFALQKAADKKSR----EIGK 120

Query: 121 KKKKKEGAATEDSQSEMNH----------RVRPLKINRDWGLRLTQLEKRLLEISDPV 163
           KKKK   +++  S    +H          +VRPL +  +WG RL +LEKR  E+S  V
Sbjct: 121 KKKKANVSSSSSSSYLGSHGEEEGVDEDVKVRPLCVKSEWGDRLDELEKRCQELSSKV 163

BLAST of Csa6G107890 vs. NCBI nr
Match: gi|596049264|ref|XP_007220476.1| (hypothetical protein PRUPE_ppa012518mg [Prunus persica])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 67/180 (37.22%), Postives = 89/180 (49.44%), Query Frame = 1

Query: 1   MWAASSTSP-IPSCHRLTITTSRPPTPPLSV-FCAMSQPSGTDAENIKPNNSSSIKGFGH 60
           MWA S  SP  P CH L    +RPP    S+   A SQP G D           + G GH
Sbjct: 1   MWAVSYLSPPTPPCHPLVRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGGLGH 60

Query: 61  KILSAVNS---PTPKSLNQTTPKHES--HPEAAQ-ISGSDVLRALQKAAAVKEKIRTQQV 120
            IL+ + S   PT   L++   K +   + E  Q ISGSDVL ALQKAA  K +    ++
Sbjct: 61  SILTKLKSNHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKKSR----EI 120

Query: 121 KEKKKKKE----------GAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 163
            +KKKK            G+  E+   + + +VRPL +  +WG RL +LEKR  E+S  V
Sbjct: 121 GKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELSSKV 165

BLAST of Csa6G107890 vs. NCBI nr
Match: gi|902172349|gb|KNA08108.1| (hypothetical protein SOVF_165630 [Spinacia oleracea])

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 57/174 (32.76%), Postives = 77/174 (44.25%), Query Frame = 1

Query: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPN----------NS 60
           MW   ++ P        I T  PPTP LS F  + QP     +  + N          + 
Sbjct: 1   MWVTIASQPF-------IPTPIPPTPFLS-FPKLPQPPTKSVQLRRRNRYPAVVAATVSP 60

Query: 61  SSIKGFGHKILSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQ 120
             I G G  + S + S      N +    +      +ISGSD+LRALQKA+A K   + Q
Sbjct: 61  HDIGGLGQAVFSTLESGPSAGSNPSKKVQQEEKSGKEISGSDILRALQKASAKKASTKKQ 120

Query: 121 QVKEK-----KKKKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEIS 160
           Q K+K     K++K G    D       +VRP+ +  DW  RL  LEKRL E S
Sbjct: 121 QQKKKGSIELKREKNGKKVVDYD-----KVRPITVKSDWATRLDDLEKRLQEFS 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KCJ8_CUCSA4.9e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1[more]
M5XRM4_PRUPE2.1e-1237.22Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1[more]
A0A0K9QN52_SPIOL4.0e-1132.76Uncharacterized protein OS=Spinacia oleracea GN=SOVF_165630 PE=4 SV=1[more]
A0A0S3RI86_PHAAN1.4e-0838.32Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G335700 PE=... [more]
A0A0L9TEX2_PHAAN1.4e-0838.32Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan635s006300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46735.12.8e-0829.14 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778712168|ref|XP_011656857.1|7.0e-86100.00PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus][more]
gi|659119605|ref|XP_008459744.1|3.1e-6582.10PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo][more]
gi|645254492|ref|XP_008233064.1|1.4e-1236.52PREDICTED: uncharacterized protein LOC103332144 [Prunus mume][more]
gi|596049264|ref|XP_007220476.1|3.0e-1237.22hypothetical protein PRUPE_ppa012518mg [Prunus persica][more]
gi|902172349|gb|KNA08108.1|5.7e-1132.76hypothetical protein SOVF_165630 [Spinacia oleracea][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU125457cucumber EST collection version 3.0transcribed_cluster
CU167920cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G107890.1Csa6G107890.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU167920CU167920transcribed_cluster
CU125457CU125457transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37728FAMILY NOT NAMEDcoord: 74..162
score: 1.2