ClCG06G002750 (gene) Watermelon (Charleston Gray)

NameClCG06G002750
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionAt2g46730/F19D11.1
LocationCG_Chr06 : 3194991 .. 3195494 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAGGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGACTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA

mRNA sequence

ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAGGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGACTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA

Coding sequence (CDS)

ATGTGGGCTGCCTCCTCAACCCCACCGAGCCCCTCCTGCCGCCGCCTCCCCATCACAACCAGGCCACCTCCGACTCCTCCGATCTCCGCCATCTACGCAAAGTCACAGCCACCCAAAACCGACGCCGAAAACACCACACCGAACAACAGTATCACCATCAAAAACTTCGGCCACAAAATTCTCTCTGCCGTGAACCCCCCAAATCCCAAATCCCTAAACCCCAACCCAAACCAAACAACCCCAAAACAGGAATTGCAACCGGAGGCCGCCCCAATTAGTGGGTCCGATGTCCTGAGGGCGCTGAAGAAGGCGGCTGCCGTGAAAGAGAAGAACAGAACTCGACAAGTTAAAGAGAAGAAGAAAGAAGGGCCTCCCACCGAAGGGAGCGACTCTCAGAATTCTGATATGAACCATGAAGTGAGGCCTCTGAGGATCAAGAGAGATTGGGGATTGAGACTCACCCAGTTGGAAAAACGCCTTCAGGAAATCTCTGAGTCGGTTTGA

Protein sequence

MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKKKEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV
BLAST of ClCG06G002750 vs. TrEMBL
Match: A0A0A0KCJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.5e-55
Identity = 120/167 (71.86%), Postives = 128/167 (76.65%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
           MWAASST P PSC RL ITT  PPTPP+S   A SQP  TDAEN  PNNS +IK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
           LSAVN P PKSL    NQTTPK E  PEAA ISGSDVLRAL+KAAAVKEK RT+QVKEKK
Sbjct: 61  LSAVNSPTPKSL----NQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 120

Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
           K+       DSQ S+MNH VRPL+I RDWGLRLTQLEKRL EIS+ V
Sbjct: 121 KKKEGAATEDSQ-SEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of ClCG06G002750 vs. TrEMBL
Match: M5XRM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-12
Identity = 65/181 (35.91%), Postives = 90/181 (49.72%), Query Frame = 1

Query: 1   MWAASS-TPPSPSCRRLPIT-TRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGH 60
           MWA S  +PP+P C  L     RPP      ++ AKSQPP  D           +   GH
Sbjct: 1   MWAVSYLSPPTPPCHPLVRNLNRPPLNLKSLSVSAKSQPPGQD-----------LGGLGH 60

Query: 61  KILSAVNPPNPKSLNPNPNQTTPKQEL---QPEAAPISGSDVLRALKKAAAVKEKNRTRQ 120
            IL+ +   N K   P  ++   KQ+    Q     ISGSDVL AL+KAA  K    +R+
Sbjct: 61  SILTKLKS-NHKPTTPILSKQKQKQKQKQNQEGKQMISGSDVLFALQKAADKK----SRE 120

Query: 121 VKEKKKEGPPTEGS---------DSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISES 168
           + +KKK+   +  S         + +  D + +VRPL +K +WG RL +LEKR QE+S  
Sbjct: 121 IGKKKKKANVSSSSLSSYLGSHGEEEGVDEDGKVRPLCVKSEWGDRLDELEKRFQELSSK 165

BLAST of ClCG06G002750 vs. TrEMBL
Match: A0A0K9QN52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_165630 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-09
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1

Query: 8   PPSP--SCRRLPITTRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKILSAVN 67
           PP+P  S  +LP     PPT  +  +  +++ P   A   +P++   I   G  + S + 
Sbjct: 16  PPTPFLSFPKLP----QPPTKSVQ-LRRRNRYPAVVAATVSPHD---IGGLGQAVFSTLE 75

Query: 68  PPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKKKEGPP 127
             +  S   NP++   ++E       ISGSD+LRAL+KA+A K   + +Q K+K      
Sbjct: 76  --SGPSAGSNPSKKVQQEE--KSGKEISGSDILRALQKASAKKASTKKQQQKKKGSIELK 135

Query: 128 TEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEIS 165
            E +  +  D + +VRP+ +K DW  RL  LEKRLQE S
Sbjct: 136 REKNGKKVVDYD-KVRPITVKSDWATRLDDLEKRLQEFS 161

BLAST of ClCG06G002750 vs. TrEMBL
Match: V4U725_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023317mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 58/171 (33.92%), Postives = 79/171 (46.20%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQ--PPKTDAENTTPNNSITIKNFGH 60
           MWA S  P +P   R        PT P    Y +    P K           I     GH
Sbjct: 11  MWAVSRIPAAPFVCR--------PTTPARRPYLRGTQYPHKNGGVYDEEMGGI-----GH 70

Query: 61  KILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKE 120
            +LS ++     S +  P     KQE       +SGSDVL AL++AAA   KN+ ++  +
Sbjct: 71  IVLSNLDAGGSGSASA-PKLQIRKQE---NGKQLSGSDVLWALQRAAA---KNKLKKKNK 130

Query: 121 KKKEGPPT----EGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
           KKK+        E  D  +   N EV+PL IK +W  +L +L+KRLQE+SE
Sbjct: 131 KKKQASSADTRREDDDDVDCGTNVEVKPLCIKSEWAAKLDELDKRLQELSE 161

BLAST of ClCG06G002750 vs. TrEMBL
Match: A0A067H3L4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031741mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 58/171 (33.92%), Postives = 79/171 (46.20%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQ--PPKTDAENTTPNNSITIKNFGH 60
           MWA S  P +P   R        PT P    Y +    P K           I     GH
Sbjct: 1   MWAVSRIPAAPFVCR--------PTTPARRPYLRGTQYPHKNGGVYDEDMGGI-----GH 60

Query: 61  KILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKE 120
            +LS ++     S +  P     KQE       +SGSDVL AL++AAA   KN+ ++  +
Sbjct: 61  IVLSNLDAGGSGSASA-PKLQIRKQE---NGKQLSGSDVLWALQRAAA---KNKLKKKNK 120

Query: 121 KKKEGPPT----EGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
           KKK+        E  D  +   N EV+PL IK +W  +L +L+KRLQE+SE
Sbjct: 121 KKKQASSADTRREDDDDVDCGTNVEVKPLCIKSEWAAKLDELDKRLQELSE 151

BLAST of ClCG06G002750 vs. TAIR10
Match: AT2G46735.1 (AT2G46735.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 52/169 (30.77%), Postives = 71/169 (42.01%), Query Frame = 1

Query: 16  LPITTRPPPTPPISAIYAKSQPPKTDAEN-------TTPNNSITIKNFGHKILSAVNPPN 75
           +P+     PT   S  Y++  P   D  +       T    S ++   G +IL       
Sbjct: 9   MPVQFHMRPTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQILL------ 68

Query: 76  PKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAV---------KEKNRTRQVKEK 135
            ++++ NP +  PK+        ISGSDVL A+++A A          K KNR   V+  
Sbjct: 69  -RTVDSNPRKPIPKE------TEISGSDVLWAIQRATAQRKRTNAGKKKTKNRLSGVELS 128

Query: 136 KKEGPPT--EGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISES 167
              G PT   G D  N      V PLRIK DWG RL + EK L+E   +
Sbjct: 129 SSAGEPTGDNGVDYSN------VTPLRIKSDWGHRLEEFEKLLKEFQNT 158

BLAST of ClCG06G002750 vs. NCBI nr
Match: gi|659119605|ref|XP_008459744.1| (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.0e-59
Identity = 122/165 (73.94%), Postives = 133/165 (80.61%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
           MWAASST PSPS RRLPITT PPP  P+S  YAKS PPK DAENT PNNS TIK+FGHKI
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60

Query: 61  LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
           LSAVN P P+SLN    QTTPK E QPEA  ISGSDVLRAL+KAAAVKEKNRT+QVKEKK
Sbjct: 61  LSAVNSPTPQSLN----QTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKK 120

Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISE 166
           K+      ++   S+MNH VRPL+IKRDWGLRLTQLEKRL E+SE
Sbjct: 121 KKKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

BLAST of ClCG06G002750 vs. NCBI nr
Match: gi|778712168|ref|XP_011656857.1| (PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 5.0e-55
Identity = 120/167 (71.86%), Postives = 128/167 (76.65%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPISAIYAKSQPPKTDAENTTPNNSITIKNFGHKI 60
           MWAASST P PSC RL ITT  PPTPP+S   A SQP  TDAEN  PNNS +IK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEKK 120
           LSAVN P PKSL    NQTTPK E  PEAA ISGSDVLRAL+KAAAVKEK RT+QVKEKK
Sbjct: 61  LSAVNSPTPKSL----NQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKK 120

Query: 121 KEGPPTEGSDSQNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
           K+       DSQ S+MNH VRPL+I RDWGLRLTQLEKRL EIS+ V
Sbjct: 121 KKKEGAATEDSQ-SEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of ClCG06G002750 vs. NCBI nr
Match: gi|658019473|ref|XP_008345091.1| (PREDICTED: protein SCARECROW 1-like [Malus domestica])

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 65/172 (37.79%), Postives = 88/172 (51.16%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPIS-AIYAKSQPPKTDAENTTPNNSITIKNFGHK 60
           MWA S  PP P  +  P+  +PPPT PI  +I AKSQPP  D           +   G  
Sbjct: 1   MWAVSYPPPPPPSQ--PLIPKPPPTYPIRLSIVAKSQPPSQD-----------LXGLGRS 60

Query: 61  ILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEK 120
           IL+ +        NPNP     +++ + +   ISGSDVL A+++AAA K     R+  +K
Sbjct: 61  ILTKLKS------NPNPKLQGKQKQDEEDKKVISGSDVLSAMQRAAAKK----NRESVKK 120

Query: 121 KKEGPPTEGSDSQNSDMNHE-------VRPLRIKRDWGLRLTQLEKRLQEIS 165
           KK+ PP+  S    S    E       VRPL +K +WG RL +L KRL E+S
Sbjct: 121 KKKAPPSSSSSYAGSHREEEGVDEYGNVRPLCVKSEWGSRLDELGKRLXELS 149

BLAST of ClCG06G002750 vs. NCBI nr
Match: gi|645254492|ref|XP_008233064.1| (PREDICTED: uncharacterized protein LOC103332144 [Prunus mume])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 66/179 (36.87%), Postives = 88/179 (49.16%), Query Frame = 1

Query: 1   MWAASSTPP-SPSCRRLPITTRPPPTPPIS-AIYAKSQPPKTDAENTTPNNSITIKNFGH 60
           MWA S  PP +P C  L      PP    S ++ AKSQPP  D           +   GH
Sbjct: 1   MWAVSYLPPPTPPCHPLVRNLNKPPLNLKSLSVSAKSQPPGQD-----------LGGLGH 60

Query: 61  KILSAVNPPNPKSLNPNPNQTTPKQELQPEAAP-ISGSDVLRALKKAAAVKEKNRTRQVK 120
            IL+ +   N K   P  ++   KQ    E    ISGSDVL AL+KAA  K    +R++ 
Sbjct: 61  SILTKLKS-NHKPTTPILSKQKQKQRQNQEGKQMISGSDVLFALQKAADKK----SREIG 120

Query: 121 EKKKEGPPTEGSDS---------QNSDMNHEVRPLRIKRDWGLRLTQLEKRLQEISESV 168
           +KKK+   +  S S         +  D + +VRPL +K +WG RL +LEKR QE+S  V
Sbjct: 121 KKKKKANVSSSSSSSYLGSHGEEEGVDEDVKVRPLCVKSEWGDRLDELEKRCQELSSKV 163

BLAST of ClCG06G002750 vs. NCBI nr
Match: gi|694381037|ref|XP_009366616.1| (PREDICTED: uncharacterized protein LOC103956370 [Pyrus x bretschneideri])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 58/172 (33.72%), Postives = 84/172 (48.84%), Query Frame = 1

Query: 1   MWAASSTPPSPSCRRLPITTRPPPTPPIS-AIYAKSQPPKTDAENTTPNNSITIKNFGHK 60
           MWA S  PP P C+ L    +PPP  P+  ++ AKSQP   D           +   G  
Sbjct: 1   MWAVSYPPPPPPCQSL--IPKPPPMSPVRLSVAAKSQPRSQD-----------LGGLGRS 60

Query: 61  ILSAVNPPNPKSLNPNPNQTTPKQELQPEAAPISGSDVLRALKKAAAVKEKNRTRQVKEK 120
           +++ +        NP+P     +++ +     ISGSDVL A+++AAA K +   ++ K K
Sbjct: 61  VITKLKS------NPDPKLQGNQKQDEEGKKVISGSDVLFAMQRAAAKKNRQSGKK-KNK 120

Query: 121 KKEGPPTEGSDSQNSDMNHE-------VRPLRIKRDWGLRLTQLEKRLQEIS 165
            K  P    S    S    E       VRPL +KR+WG +L +L KRLQE+S
Sbjct: 121 GKVSPSLSLSSYAGSHREEEGVDEYGCVRPLCVKREWGSKLDELAKRLQELS 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KCJ8_CUCSA3.5e-5571.86Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1[more]
M5XRM4_PRUPE2.2e-1235.91Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012518mg PE=4 SV=1[more]
A0A0K9QN52_SPIOL6.5e-0933.33Uncharacterized protein OS=Spinacia oleracea GN=SOVF_165630 PE=4 SV=1[more]
V4U725_9ROSI1.9e-0833.92Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023317mg PE=... [more]
A0A067H3L4_CITSI1.9e-0833.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031741mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46735.12.0e-0930.77 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659119605|ref|XP_008459744.1|2.0e-5973.94PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo][more]
gi|778712168|ref|XP_011656857.1|5.0e-5571.86PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus][more]
gi|658019473|ref|XP_008345091.1|1.2e-1637.79PREDICTED: protein SCARECROW 1-like [Malus domestica][more]
gi|645254492|ref|XP_008233064.1|1.8e-1236.87PREDICTED: uncharacterized protein LOC103332144 [Prunus mume][more]
gi|694381037|ref|XP_009366616.1|1.8e-1233.72PREDICTED: uncharacterized protein LOC103956370 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002750.1ClCG06G002750.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 153..167
scor
NoneNo IPR availablePANTHERPTHR37728FAMILY NOT NAMEDcoord: 78..167
score: 4.0
NoneNo IPR availablePANTHERPTHR37728:SF1SUBFAMILY NOT NAMEDcoord: 78..167
score: 4.0