Cp4.1LG12g04340 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g04340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 3403561 .. 3404052 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTCCCAACCAGGCCGCCTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGTCACAAAATTCTCTCGGCCGCGAACTCCACAAATTCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAATCCGGCAAGGGAGAGAGCAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTGCTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGGTTTGA

mRNA sequence

ATGTGGGCTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTCCCAACCAGGCCGCCTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGTCACAAAATTCTCTCGGCCGCGAACTCCACAAATTCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAATCCGGCAAGGGAGAGAGCAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTGCTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGGTTTGA

Coding sequence (CDS)

ATGTGGGCTGCCTTCTCGACCTCACCGAGCCCGTCCTGCTGCCGCCTCCCGCTCCCAACCAGGCCGCCTCCGACACCTCCGGTCTCCGCCATCTACGCGAAGGCTCAGCCACCCGAAACCGACGCCGATAACGCCACACCAAACAACAGTAGCAGCATCAAAAGCTTCGGTCACAAAATTCTCTCGGCCGCGAACTCCACAAATTCCAAATCCCGCAGCCCCATCCGAAAACAGGAATCGCAATTGGAGACTGCCCAAATTAGTGGGTTAGATGTTCTGAGGGCACTGCAGAAGGCGGCCGCCGTGAAGGAGAAGAACAGAATCCGGCAAGGGAGAGAGCAGAAGAAAGACGGGCCGCCTCCCACCGAAGGGAGCGGCTCTGATAACTCTGAGATGAACCGTAGAGTGAGGCCTCTGAGAATCAAGAACGATTGGGGCTTGAGACTTGCTGAGTTGGAGAAACGCCTTCAGGAGATCTCTGAGACGGTTTGA

Protein sequence

MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKILSAANSTNSKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGPPPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV
BLAST of Cp4.1LG12g04340 vs. TrEMBL
Match: A0A0A0KCJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 103/166 (62.05%), Postives = 117/166 (70.48%), Query Frame = 1

Query: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKI 60
           MWAA STSP PSC RL + T  PPTPP+S   A +QP  TDA+N  PNNSSSIK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAANSTNSKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120
           LSA NS   KS      K ES  E AQISG DVLRALQKAAAVKEK R +Q +E+KK   
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 164
              EG+ +++  SEMN RVRPL+I  DWGLRL +LEKRL EIS+ V
Sbjct: 121 -KKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of Cp4.1LG12g04340 vs. TrEMBL
Match: B9SVF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0131360 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 1

Query: 16  LPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKILSAANSTNSKSRSPI 75
           +PLP R      +   + + QPP     +A    SS      H+      STN K R  +
Sbjct: 10  IPLPHR------LQCSFIQKQPPVFLGISANSQPSS------HRY----TSTNKKQRQKL 69

Query: 76  RKQESQLE------TAQISGLDVLRALQKAAAVKEKNRIRQG-REQKKDGPPPTEGSGSD 135
           +KQ+ + +      T Q+SG+DVL A+QKAAA  EKNR     R +K+DG     G    
Sbjct: 70  QKQDEEKQKERGAVTNQLSGIDVLWAMQKAAA--EKNRTSNSKRNRKRDGLISASGQKEK 129

Query: 136 NSEMNR----RVRPLRIKNDWGLRLAELEKRLQEIS 161
             E +      VRPL IK+DWG RL  LEKRL E+S
Sbjct: 130 EKEKDAVDYSNVRPLCIKSDWGPRLDRLEKRLNELS 147

BLAST of Cp4.1LG12g04340 vs. TAIR10
Match: AT2G46735.1 (AT2G46735.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 56/163 (34.36%), Postives = 73/163 (44.79%), Query Frame = 1

Query: 18  LPTRPPPTPPVSAIYAKAQPPETDADN---------ATPNNSSSIKSFGHKILSAANSTN 77
           +P +    P V+   A +QPP  + D               S S+   G +IL    + +
Sbjct: 9   MPVQFHMRPTVATSVAYSQPPPHNYDGIHRRFINVPTKSQTSESVGGLGQQIL--LRTVD 68

Query: 78  SKSRSPIRKQESQLETAQISGLDVLRALQKAAAV---------KEKNRIRQGREQKKDGP 137
           S  R PI K+       +ISG DVL A+Q+A A          K KNR+  G E      
Sbjct: 69  SNPRKPIPKE------TEISGSDVLWAIQRATAQRKRTNAGKKKTKNRL-SGVELSSSAG 128

Query: 138 PPTEGSGSDNSEMNRRVRPLRIKNDWGLRLAELEKRLQEISET 163
            PT  +G D S     V PLRIK+DWG RL E EK L+E   T
Sbjct: 129 EPTGDNGVDYSN----VTPLRIKSDWGHRLEEFEKLLKEFQNT 158

BLAST of Cp4.1LG12g04340 vs. NCBI nr
Match: gi|659119605|ref|XP_008459744.1| (PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 104/164 (63.41%), Postives = 120/164 (73.17%), Query Frame = 1

Query: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKI 60
           MWAA STSPSPS  RLP+ T PPP  PVS  YAK+ PP+ DA+N  PNNS +IKSFGHKI
Sbjct: 1   MWAASSTSPSPSFRRLPITTTPPPAAPVSLFYAKSHPPKMDAENTKPNNSGTIKSFGHKI 60

Query: 61  LSAANSTNSKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120
           LSA NS   +S      K ESQ E  QISG DVLRALQKAAAVKEKNR +Q +E+KK   
Sbjct: 61  LSAVNSPTPQSLNQTTPKHESQPEAPQISGSDVLRALQKAAAVKEKNRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLAELEKRLQEISE 162
              EG+ +++  SEMN RVRPL+IK DWGLRL +LEKRL E+SE
Sbjct: 121 KKKEGAATEDSYSEMNHRVRPLKIKRDWGLRLTQLEKRLLEMSE 161

BLAST of Cp4.1LG12g04340 vs. NCBI nr
Match: gi|778712168|ref|XP_011656857.1| (PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-37
Identity = 103/166 (62.05%), Postives = 117/166 (70.48%), Query Frame = 1

Query: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKI 60
           MWAA STSP PSC RL + T  PPTPP+S   A +QP  TDA+N  PNNSSSIK FGHKI
Sbjct: 1   MWAASSTSPIPSCHRLTITTSRPPTPPLSVFCAMSQPSGTDAENIKPNNSSSIKGFGHKI 60

Query: 61  LSAANSTNSKS-RSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120
           LSA NS   KS      K ES  E AQISG DVLRALQKAAAVKEK R +Q +E+KK   
Sbjct: 61  LSAVNSPTPKSLNQTTPKHESHPEAAQISGSDVLRALQKAAAVKEKIRTQQVKEKKK--- 120

Query: 121 PPTEGSGSDN--SEMNRRVRPLRIKNDWGLRLAELEKRLQEISETV 164
              EG+ +++  SEMN RVRPL+I  DWGLRL +LEKRL EIS+ V
Sbjct: 121 -KKEGAATEDSQSEMNHRVRPLKINRDWGLRLTQLEKRLLEISDPV 162

BLAST of Cp4.1LG12g04340 vs. NCBI nr
Match: gi|1009142925|ref|XP_015888986.1| (PREDICTED: histone-lysine N-methyltransferase SETD1B-A-like [Ziziphus jujuba])

HSP 1 Score: 67.0 bits (162), Expect = 3.5e-08
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 1

Query: 1   MWAA-FSTSPSPSCCRLPLPTRPPPT---PPVSAIYAKAQPPETDADNATPNNSSSIKSF 60
           MWAA   +SP P    +P PT+P      P V ++   +QPP+ +       + ++I S 
Sbjct: 1   MWAASIGSSPGPCHSLIPKPTKPRRRLIGPLVLSVPVNSQPPDQNIQRLGRTSRTTIDS- 60

Query: 61  GHKILSAANSTNSKSRSPIRKQ---ESQLETAQISGLDVLRALQKAAAVKEKNRIRQGRE 120
                      ++K  +PI KQ   E + E  QISG DVL A+QKAAA K +    + ++
Sbjct: 61  -----------STKPTNPIEKQDEGEEEEEGRQISGSDVLWAMQKAAAHKNRVSGMKKKK 120

Query: 121 QKKDGPPPTEGSGSDNSEMN-----RRVRPLRIKNDWGLRLAELEKRLQEIS 161
           +KK+    ++GS S + E         VRPL I +DWG RL ELEK LQE+S
Sbjct: 121 KKKNKMKKSKGSSSSHVEQEVAIDYSNVRPLSISSDWGGRLDELEKLLQELS 160

BLAST of Cp4.1LG12g04340 vs. NCBI nr
Match: gi|658019473|ref|XP_008345091.1| (PREDICTED: protein SCARECROW 1-like [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 61/167 (36.53%), Postives = 83/167 (49.70%), Query Frame = 1

Query: 1   MWAAFSTSPSPSCCRLPLPTRPPPTPPVS-AIYAKAQPPETDADNATPNNSSSIKSFGHK 60
           MWA     P P     PL  +PPPT P+  +I AK+QPP  D           +   G  
Sbjct: 1   MWAVSYPPPPPPS--QPLIPKPPPTYPIRLSIVAKSQPPSQD-----------LXGLGRS 60

Query: 61  ILSAANSTNSKSRSPIRKQESQLETAQISGLDVLRALQKAAAVKEKNRIRQGREQKKDGP 120
           IL+   S  +      +KQ+ + +   ISG DVL A+Q+AAA K +  +++    KK  P
Sbjct: 61  ILTKLKSNPNPKLQGKQKQDEE-DKKVISGSDVLSAMQRAAAKKNRESVKK----KKKAP 120

Query: 121 PPTEGS--GSDNSEMN----RRVRPLRIKNDWGLRLAELEKRLQEIS 161
           P +  S  GS   E        VRPL +K++WG RL EL KRL E+S
Sbjct: 121 PSSSSSYAGSHREEEGVDEYGNVRPLCVKSEWGSRLDELGKRLXELS 149

BLAST of Cp4.1LG12g04340 vs. NCBI nr
Match: gi|223530538|gb|EEF32419.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 59/156 (37.82%), Postives = 78/156 (50.00%), Query Frame = 1

Query: 16  LPLPTRPPPTPPVSAIYAKAQPPETDADNATPNNSSSIKSFGHKILSAANSTNSKSRSPI 75
           +PLP R      +   + + QPP     +A    SS      H+      STN K R  +
Sbjct: 10  IPLPHR------LQCSFIQKQPPVFLGISANSQPSS------HRY----TSTNKKQRQKL 69

Query: 76  RKQESQLE------TAQISGLDVLRALQKAAAVKEKNRIRQG-REQKKDGPPPTEGSGSD 135
           +KQ+ + +      T Q+SG+DVL A+QKAAA  EKNR     R +K+DG     G    
Sbjct: 70  QKQDEEKQKERGAVTNQLSGIDVLWAMQKAAA--EKNRTSNSKRNRKRDGLISASGQKEK 129

Query: 136 NSEMNR----RVRPLRIKNDWGLRLAELEKRLQEIS 161
             E +      VRPL IK+DWG RL  LEKRL E+S
Sbjct: 130 EKEKDAVDYSNVRPLCIKSDWGPRLDRLEKRLNELS 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCJ8_CUCSA1.9e-3762.05Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107890 PE=4 SV=1[more]
B9SVF7_RICCO2.3e-0637.82Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0131360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46735.11.2e-0634.36 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659119605|ref|XP_008459744.1|1.3e-3963.41PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo][more]
gi|778712168|ref|XP_011656857.1|2.7e-3762.05PREDICTED: uncharacterized protein LOC105435778 [Cucumis sativus][more]
gi|1009142925|ref|XP_015888986.1|3.5e-0836.63PREDICTED: histone-lysine N-methyltransferase SETD1B-A-like [Ziziphus jujuba][more]
gi|658019473|ref|XP_008345091.1|1.0e-0736.53PREDICTED: protein SCARECROW 1-like [Malus domestica][more]
gi|223530538|gb|EEF32419.1|3.2e-0637.82conserved hypothetical protein [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g04340.1Cp4.1LG12g04340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 142..162
scor
NoneNo IPR availablePANTHERPTHR37728FAMILY NOT NAMEDcoord: 83..163
score: 7.3

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g04340Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g04340Wax gourdcpewgoB0174