Lsi09G001210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G001210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Mitochondrial import inner membrane translocase subunit Tim13, putative
Location	chr09 : 1161703 .. 1165238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCATTTTCATCGCCTTCAACCGGTTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCATTACTTGTTTGTTCAATTACTTATATCATGTGCGGATGTATCATGTTTGCATATCTGGACTTCTTAGAGTAGTCGGTTTGATGAATGCGTTTCAATATTGTGTGTTTTGTGACGGTTGAAATGTGACAAAGGAATTAGTAATTTCTGGGTTTGAAGTTTGGGTAGCGATAGGAGGTTGCTTTTAAAGATGGTATGCAAGTATTAATCAATGCGAATTGTTGAGCCTATAGATTTTGTATTCTTTCACAACATCAAATTTAATCGTTTAGGTCTGTTTTGATAACTATTTGGTTTTTTAGAATTATGCTTGTTTTCTCACCATTATTTACCATTATTTTCATATTTCTAAGGAAACATTTGAACTCAGCCATATTTCAAAAACAAAAACAAGTTTTTCAAATGCATTTTCTTAGTTTTGATAACTTTGGCTTGAATTTTGAAAACCCAACTCATAGGTAGGAGTAGTAATATAAGTTTAATTTTCATTTTCAAAAACCAAATGGTTATTAAATGTCACCTTAAATTCTCACTTGTCAGTTCCAGTTGGAACTTGTTTTTCATTTCCTCATATTTCTTTTACCAATTGAAGATGTAGAAATCTAAAATTCAGGTGTGGAAGTTCTTTGGTGATCGTGTGCAGTAGAAGAAAAATACTTCATGTTGCCTAACCTGTGTTGTAGGATTGATTGATGGATATGAATATTTTTTCTCTATTGATTTTGACTGGGGACGGGAGGGCCAGAGGTAGTAATAGTAGGAGGAACAAATTTTCCGGAAGAAATTTCTTGAACCTTTACAAATAGTTCTATAACATTAAGTTGTTGTCCCTGTGTGGTAGAGGACCGTTCTCTGATTTATTCTTGCTCTAGGTATTCATAAATTCTTCATAATGATTAGTACAGAGAAGATGCTAATTTTACTTGTATAAAAAAATTCTCTGGTAAGATAGGGACTTCTGTAAAGATGTCTTGAGAAATAGGAGAGAAATTTTATTATTCCTGTTGAGGTTAAGAGGAACGGCTGGCTTGTAAGGGACATTTCCCCCCCTCTTTTTTCGCATTTCATAGTTTCTTCAGACATTGTTTCTTGATGTTTTGACACCAACCGTAGTTGAACCTTGCTTTCCCTTGAAGAAAACTAAAAGTGACCACTGGACACCAGGCAAATAGCACGTTGGAGGATTTGATGGGACAACGTCATCCTGAATCATTAATCATTTGGAAATGCCTATGAAAAATCTAGAAGCTTGAATGAGTGTGGGTTTGGGTTAGGATTTAAAGCATGGGGCATCTTTGCCAAACCATTTTCAAAACTGTTTTCTGTTTAAAAAAAGTTATTTGTTTTTGTTTTCACTTTTTGTTGAAGAATTCTGATTGGATGGCTTGTATTGGTTAGTATTGTTATGCACATTGATATTACTATACACAAATCAATGATTTTGATAGGAAGAATAATTTTACTGTCCTAAAAACCTGGTCATCCATGAAAAGACACTAAAGAAAAAGAAAGGGAAAAAACTGTATCCAACCATACTTTCACTGAGTCCACTCTTTCACCTTATTTAAATTCCAGCTACTTTTCCTAACCAGTTGTTCTACCATAAGATCTTTGAACTTGGCTGCACTAAAGATACTGGGGAAGGAATGACATAAAGGTTCATTGTGCAGCCAATGGTCCTTCCAAAACATCGTTTCATTACCTTTGCCCACCTTTGTCTTGGACCACTTATCAGAAAACTGAATGCACTCCAAAATATGGAGCCAAGGGCACTTGACTGTACCTTTCAACACAGTTCACCAGTCTTTCTCTTGCCACTTTTCTTGGAAGCTATCACCTTCCTCCACAAAGCCTTAGTTGAGAACCTCCAACCCCACTTGGTCAAGAGAGCCCTATTTCTAGCTGCTAATCTCCCAATGCCCAAACCTCCCATTGAAGTGGGAAAGGACGTGATTTCCCAATTTTTGAGGTTAATGAAATGAGATGTACTCAATAAAATAAATTTTGGGTCGGGAAACTTCTTCTGGAGACAAGTCTCTTCTTTTAGGGAAATGGTGTGGGTAATAGGAAAATTTTGGATCCAATTTTTATTGCCTTATAAGTTGGTAGAGGATTGTCAAAGAAGGAAATCTAAAGGTTGAACAAACCAATAAGAAAGGGTGGGAGAAAGTCTTTTATGAGAAATTTTTGAAGGAGTGGACTTGGGGAGAGATGGGACAGCTTTGAACTACAACTTTATCTACCATACGATAGAGTATTCAACGAGAAAAGTCTTTTCCATCTGGTGTTCTCTTTCAGAGCTTTTTTGTGATTATGATCTTGTACATTCCCCATAGTGTGGCCAACTAGAATTCCTTTTTTAACCTTTGCCCTTAGGGACGTTTCATTCCCCATTTTTTGTATGGTCTCTCTCCATCAATATATTTCTCCATTTCTTCTAAAAAGGTTAAAATCATATTACATGTTTTTTTTACTCTGTTGATTACTTGATTCTCAGACTTTACTTTTATGGGATAGATCTCAGGAGGTAGGACATTGAAGATATTGTCGTTGCTGTGTGTTTTTTAAGATTGTCTTGAGGGTTTTTGGGGAGCACACTTATGGGTATGTGGTGTTGTGTTCGCAGTTTGCACCTTGTGTGTGTTTAGTAATATCAAACTTCTTGACAATAATTTCTTATCTTCTTGATATGAGAAGACCCAAAAGCCAGTTTCAAATTAAATTCTTGATATATATATATTTGGGATAATTTCAAATTGTTCATTCATATTATCTTGCACCGCGGATGTGCCTTGTAGTAGCATCATGGTTCTTGATCATTGTTGCGATTAATGAAATGAAAGGGTAGACTTTCCAACCAAAAGATTCACGAGCCAATCTCTTTCTCTCTCTGACCTGGGATTATATATTTTCTTTTTCTTTGTCTTACTCTTTTCATTTAATTGATTATATTTATTATTTTCCCTTGATTTGGACAATGTTGAGTTGTTGCTCATTGCACTTCTCTTGCACAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGAAATAATAGGTTTTCCTGAGACATTATGCGGTCGAGGTATCTTCAGCTACCTACATTTTGTTCGATATTTATTTTCCAGCTCTAAAATCTTTCTCGAGGAGACATGCTTTTGATCTGTGCCCTAATAATAATATTGGTATCATGTGCTTGATTTGATTACATGTGAACTTTGGACCAATTAAACTCTCATTTCTTCTGATTTAACATGCTTCAATTGGAGTTATTTGTGTGGGTATTTCTTCTGATT

mRNA sequence

ATGGATTCATTTTCATCGCCTTCAACCGGTTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCATTACTTGTTTGTTCAATTACTTATATCATAAAACTGAATGCACTCCAAAATATGGAGCCAAGGGCACTTGACTGTACCTTTCAACACAGTTCACCAGTCTTTCTCTTGCCACTTTTCTTGGAAGCTATCACCTTCCTCCACAAAGCCTTAGTTGAGAACCTCCAACCCCACTTGGTCAAGAGAGCCCTATTTCTAGCTGCTAATCTCCCAATGCCCAAACCTCCCATTGAAGTGGGAAAGGACGTGATTTCCCAATTTTTGAGGGAAATGGTGTGGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGAAATAATAGGTTTTCCTGAGACATTATGCGGTCGAGGTATCTTCAGCTACCTACATTTTGTTCGATATTTATTTTCCAGCTCTAAAATCTTTCTCGAGGAGACATGCTTTTGATCTGTGCCCTAATAATAATATTGGTATCATGTGCTTGATTTGATTACATGTGAACTTTGGACCAATTAAACTCTCATTTCTTCTGATTTAACATGCTTCAATTGGAGTTATTTGTGTGGGTATTTCTTCTGATT

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCTTCAACCGGTTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTCCCATTACTTGTTTGTTCAATTACTTATATCATAAAACTGAATGCACTCCAAAATATGGAGCCAAGGGCACTTGACTGTACCTTTCAACACAGTTCACCAGTCTTTCTCTTGCCACTTTTCTTGGAAGCTATCACCTTCCTCCACAAAGCCTTAGTTGAGAACCTCCAACCCCACTTGGTCAAGAGAGCCCTATTTCTAGCTGCTAATCTCCCAATGCCCAAACCTCCCATTGAAGTGGGAAAGGACGTGATTTCCCAATTTTTGAGGGAAATGGTGTGGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAGGCCACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTGA

Protein sequence

MDSFSSPSTGSSPQFSANEFRDQLKTQLAQAYAEEFLEVLPLPLLVCSITYIIKLNALQNMEPRALDCTFQHSSPVFLLPLFLEAITFLHKALVENLQPHLVKRALFLAANLPMPKPPIEVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH

Homology

[Close]

BLAST of Lsi09G001210 vs. Swiss-Prot
Match: TIM13_ARATH (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 6.0e-17
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 115 PKPPIEVGKDVISQ-FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATS 174
           P+  +E  K  ++Q +  E++ TLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+
Sbjct: 18  PEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGSESSCISRCVERYMEATA 77

Query: 175 IVSRALF 181
           I+SR+LF
Sbjct: 78  IISRSLF 84

[Close]

BLAST of Lsi09G001210 vs. Swiss-Prot
Match: TIM13_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRAL 179
           ++   +   + +E + T+  KCF KC+TKPGSSLSGSESSCISRC++RYIEAT IVSRAL
Sbjct: 20  QIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRAL 79

Query: 180 FKT 183
           F +
Sbjct: 80  FSS 82

[Close]

BLAST of Lsi09G001210 vs. Swiss-Prot
Match: TIM13_USTMA (Mitochondrial import inner membrane translocase subunit TIM13 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TIM13 PE=3 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-08
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVS 177
           +V  ++     ++++     KC+ KCI  PG+SLSG E +C++RCMERY EA +IVS
Sbjct: 28  QVSSELAMANAQQLITKATEKCYSKCIPAPGASLSGKEQTCLTRCMERYFEAFNIVS 84

[Close]

BLAST of Lsi09G001210 vs. Swiss-Prot
Match: TIM13_SCHPO (Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim13 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 24/46 (52.17%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 132 EMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSR 178
           E++  +   CFDKCI +PGS+   +E SC+S+CMERY++A +IVSR
Sbjct: 36  ELISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSR 81

[Close]

BLAST of Lsi09G001210 vs. Swiss-Prot
Match: TIM13_DROME (Mitochondrial import inner membrane translocase subunit Tim13 OS=Drosophila melanogaster GN=Tim13 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 109 AANLPMPKPPIEVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERY 168
           AAN+   +   +V + +     +EM+  +  KCF KCI KPG SL  +E  CIS+CM+R+
Sbjct: 3   AANMEKGELMNQVKQQIALANAQEMLSKMTEKCFKKCIQKPGKSLDSTEQRCISQCMDRF 62

Query: 169 IEATSIVSR 178
           ++A ++VSR
Sbjct: 63  MDAWNLVSR 71

[Close]

BLAST of Lsi09G001210 vs. TrEMBL
Match: A0A0A0KK66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 129 FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 185
           +  E + TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Sbjct: 32  YAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Lsi09G001210 vs. TrEMBL
Match: B9RYX8_RICCO (Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRAL 179
           +V   +   + +E + T+R KCFDKCITKPGSSLSGSESSCISRC++RYIEAT IVSRAL
Sbjct: 24  QVKTQLAQAYAQEFLETVRGKCFDKCITKPGSSLSGSESSCISRCVDRYIEATGIVSRAL 83

Query: 180 FKTPH 185
           F  PH
Sbjct: 84  FNAPH 88

[Close]

BLAST of Lsi09G001210 vs. TrEMBL
Match: D7KVJ2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893356 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 113 PMPKPPIEVGKDVISQ-FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEA 172
           P P+  +E  K  ++Q +  E + T+RVKCFDKCITKPGSSL GSESSCISRC +RYIEA
Sbjct: 15  PSPEVLMEQVKTQLAQAYAEEFIETVRVKCFDKCITKPGSSLGGSESSCISRCFDRYIEA 74

Query: 173 TSIVSRALF 181
           T I+SR+LF
Sbjct: 75  TGIISRSLF 83

[Close]

BLAST of Lsi09G001210 vs. TrEMBL
Match: A0A068UXB5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035682001 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRAL 179
           +V   +   +  E + TLR KCF+KCITKPGSSLSGSESSC+SRC++RYIEAT I+SRAL
Sbjct: 25  QVKLQLAQAYAEEFLETLRGKCFEKCITKPGSSLSGSESSCVSRCVDRYIEATGIISRAL 84

Query: 180 FKT 183
           F+T
Sbjct: 85  FRT 87

[Close]

BLAST of Lsi09G001210 vs. TrEMBL
Match: V4KCX1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019387mg PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 129 FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFK 182
           +  E + TLRVKCFDKCITKPGSSLSG ESSCISRC++RY+EAT I+SRALF+
Sbjct: 30  YAEEFIETLRVKCFDKCITKPGSSLSGGESSCISRCVDRYMEATGIISRALFQ 82

[Close]

BLAST of Lsi09G001210 vs. TAIR10
Match: AT1G61570.1 (AT1G61570.1 translocase of the inner mitochondrial membrane 13)

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-18
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 115 PKPPIEVGKDVISQ-FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATS 174
           P+  +E  K  ++Q +  E++ TLR KCFDKC+TKPGSSL GSESSCISRC+ERY+EAT+
Sbjct: 18  PEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGSESSCISRCVERYMEATA 77

Query: 175 IVSRALF 181
           I+SR+LF
Sbjct: 78  IISRSLF 84

[Close]

BLAST of Lsi09G001210 vs. TAIR10
Match: AT5G50810.1 (AT5G50810.1 translocase inner membrane subunit 8)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 130 LREMVWTLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATSIVSR 178
           + EMV  +   C+DKCIT  PGS  S SESSC++ C +RY++ + I+ +
Sbjct: 24  VNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

[Close]

BLAST of Lsi09G001210 vs. NCBI nr
Match: gi|449456285|ref|XP_004145880.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-19
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1


Query: 129 FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 185
           +  E + TLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Sbjct: 32  YAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Lsi09G001210 vs. NCBI nr
Match: gi|255555823|ref|XP_002518947.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Ricinus communis])

HSP 1 Score: 94.4 bits (233), Expect = 2.3e-16
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRAL 179
           +V   +   + +E + T+R KCFDKCITKPGSSLSGSESSCISRC++RYIEAT IVSRAL
Sbjct: 24  QVKTQLAQAYAQEFLETVRGKCFDKCITKPGSSLSGSESSCISRCVDRYIEATGIVSRAL 83

Query: 180 FKTPH 185
           F  PH
Sbjct: 84  FNAPH 88

[Close]

BLAST of Lsi09G001210 vs. NCBI nr
Match: gi|297837295|ref|XP_002886529.1| (hypothetical protein ARALYDRAFT_893356 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 113 PMPKPPIEVGKDVISQ-FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEA 172
           P P+  +E  K  ++Q +  E + T+RVKCFDKCITKPGSSL GSESSCISRC +RYIEA
Sbjct: 15  PSPEVLMEQVKTQLAQAYAEEFIETVRVKCFDKCITKPGSSLGGSESSCISRCFDRYIEA 74

Query: 173 TSIVSRALF 181
           T I+SR+LF
Sbjct: 75  TGIISRSLF 83

[Close]

BLAST of Lsi09G001210 vs. NCBI nr
Match: gi|727484486|ref|XP_010418124.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM13-like [Camelina sativa])

HSP 1 Score: 90.1 bits (222), Expect = 4.3e-15
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 113 PMPKPPIEVGKDVISQ-FLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEA 172
           P P+  +E  K  ++Q +  E + TLR KCF+KCITKPGSSL GSESSC+SRC++RYIEA
Sbjct: 14  PSPEAMMEQVKTQLAQAYAEEFIETLRGKCFEKCITKPGSSLGGSESSCVSRCVDRYIEA 73

Query: 173 TSIVSRALFKTPH 185
           T I+SR+LF   H
Sbjct: 74  TGIISRSLFSKQH 86

[Close]

BLAST of Lsi09G001210 vs. NCBI nr
Match: gi|661884336|emb|CDP12253.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 89.4 bits (220), Expect = 7.3e-15
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 120 EVGKDVISQFLREMVWTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRAL 179
           +V   +   +  E + TLR KCF+KCITKPGSSLSGSESSC+SRC++RYIEAT I+SRAL
Sbjct: 25  QVKLQLAQAYAEEFLETLRGKCFEKCITKPGSSLSGSESSCVSRCVDRYIEATGIISRAL 84

Query: 180 FKT 183
           F+T
Sbjct: 85  FRT 87

The following BLAST results are available for this feature:

BLAST of Lsi09G001210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM13_ARATH	6.0e-17	62.69	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
TIM13_ORYSJ	5.6e-15	60.32	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
TIM13_USTMA	3.9e-08	43.86	Mitochondrial import inner membrane translocase subunit TIM13 OS=Ustilago maydis...	[more]
TIM13_SCHPO	5.1e-08	52.17	Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharom...	[more]
TIM13_DROME	5.1e-08	40.58	Mitochondrial import inner membrane translocase subunit Tim13 OS=Drosophila mela...	[more]

BLAST of Lsi09G001210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK66_CUCSA	1.2e-19	89.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1	[more]
B9RYX8_RICCO	1.6e-16	67.69	Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricin...	[more]
D7KVJ2_ARALL	3.0e-15	63.77	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A068UXB5_COFCA	5.1e-15	65.08	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035682001 PE=3 SV=1	[more]
V4KCX1_EUTSA	6.7e-15	75.47	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10019387mg PE=3 SV=1	[more]

BLAST of Lsi09G001210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61570.1	3.4e-18	62.69	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	2.3e-06	44.90	translocase inner membrane subunit 8	[more]

BLAST of Lsi09G001210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456285\|ref\|XP_004145880.1\|	1.7e-19	89.29	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumi...	[more]
gi\|255555823\|ref\|XP_002518947.1\|	2.3e-16	67.69	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Ricinu...	[more]
gi\|297837295\|ref\|XP_002886529.1\|	4.3e-15	63.77	hypothetical protein ARALYDRAFT_893356 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|727484486\|ref\|XP_010418124.1\|	4.3e-15	58.90	PREDICTED: mitochondrial import inner membrane translocase subunit TIM13-like [C...	[more]
gi\|661884336\|emb\|CDP12253.1\|	7.3e-15	65.08	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008150	biological_process
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G001210.1	Lsi09G001210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 131..180 score: 3.1
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 131..179 score: 9.9
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 131..181 score: 8.89
None	No IPR available	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 131..181 score: 1.6
None	No IPR available	PANTHER	PTHR19338:SF0	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM13	coord: 131..181 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G001210	Csa5G146860	Cucumber (Chinese Long) v2	culsiB322
Lsi09G001210	CSPI05G04090	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G001210	Cucsa.193350	Cucumber (Gy14) v1	cgylsiB328
Lsi09G001210	CmaCh15G013340	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G001210	CmaCh02G009530	Cucurbita maxima (Rimu)	cmalsiB535
Lsi09G001210	CmoCh02G009610	Cucurbita moschata (Rifu)	cmolsiB521
Lsi09G001210	CmoCh15G013960	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G001210	MELO3C005802	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G001210	ClCG01G001340	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G001210	MELO3C005802.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G001210	Bhi12G000047	Wax gourd	lsiwgoB008
Lsi09G001210	Cp4.1LG05g07510	Cucurbita pepo (Zucchini)	cpelsiB578
Lsi09G001210	Cp4.1LG00g00840	Cucurbita pepo (Zucchini)	cpelsiB002
Lsi09G001210	CsGy5G001340	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G001210	Carg21323	Silver-seed gourd	carlsiB327
Lsi09G001210	CsaV3_5G001470	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G001210	Silver-seed gourd	carlsiB646
Lsi09G001210	Cucumber (Chinese Long) v3	cuclsiB268
Lsi09G001210	Watermelon (97103) v2	lsiwmbB007
Lsi09G001210	Watermelon (97103) v1	lsiwmB027