Bhi12G000047 (gene) Wax gourd

Overview
NameBhi12G000047
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr12 : 1875151 .. 1878639 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAATTAAACCGGTGGTCAAAGAAAATTGATTGACCAAATTGTGAATTGAGGAGGTAAGGTTGAACCACGGCAAAGGCGCGCCCTAATTGCATTGGCATAACCATCGCCGCCATCCATCGAACACAAAATCAGCTCAACGGCGCAGCGCAAGCGAATACAGAAAAGGGGCAGTGGTTTATAGGGTTTTGCAAGTACCATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTCTACCTCTACCTTACTTGTTTCTTTTCTTCCAAACTTGTTTGTCGAATTACCGATATGTGTGTGCGGATGTATGCATGTCTGGACTTCTTACAGTTGTTGGTTTGATTAATGTGTTTCACTTTTGTCTCTTTTGTGATGGTTATTTGTAATGAGAGAAAGGAATCAGTAATTTCTGGATTTGAAGTTTAGGTTAGTGATTGGAGCTCGCTATTAAAGATGGGTTGCAAGAATTAATCAATGCGAATTGTTGAGTCTGTAGATTTTGGAGTATTCTATCACAACATCAAATGGAATCATTTTGGCTTCGCTTGATAGCCATTTGGCTTTTGAGAATTGTGTTTGTTTTCTCACCATTAGTTACCATGATTTTCATTTTTCCAAGGAAACATTTGAACTCCTAGCCAAATTACATTAACAAAAACAAATTTTTAGTTTTCAAAGCTTTGGCTTTTATTTTAAAACATCCCCTAAAGAGTGGATATCAACAACAGGAATCCATGAGTAGAAGTAGTGTTTATAAGCTTTAGAACTTAGTTCTATGACATTAAGTTGTTTCCCTTGTGTGGTAGAGGACTCGCCCTTTGATTTATTCTTGCTCTAGGTATCCATAAATCCTTCACATGATTAGTACAGAAGATAATTTTAATTGGATCAACCAATCATCCAACTATATTCACTCAGCCCACTCTTTCACCTTCCAATTCGCAAGACTCCTAAATTTAAATTCCAGCTACTATTTAAGCCTAACCAGCATTGTTCTGTCATAAGATGTTTGGAGTTTGCCACACTAAAGGTACTGGGGAAGGAATGACATACAGGTTCATTGTTCAGCCAGTGGTCCTTCCAAAACAGGGTTTTATTACCTTTGCTCACCTTTGTCTTGTACCACTTATCAGTAAACTGAATGCAGTCTAAGACTCTAAAATATGAAGCCAATGGCCTTTAACTTGACCATACCTTTCAACACAGTCCACGAGTCTTTCTCTTGCCACTTCTTTTGGAAGCTTTCACTTTCCTCCATAAAGCCTTCTATTCAGTTGAGAACTTCCAACCCCACTTGGCCAAGAGAGTCCTATTCCTAGCTGCTAATCTTCCAATGCCCAAACCTCCCATTGAAGTAGGAAAGGAAGTGATTTCCCAATTTATGAGGTTGTTTGTGAAATGAGGTGCACTCAATAAAATAAATTTTGGGTCAGGAAACTTCTTCTGGAGACAAGTCTCTTCTTTTGGGGAAATGGTTTGGGTAATAGGAAAAATTTGGATCCAATTTTGACTGCCTTATAAGTTGGTAGAGGATTGTCTTGTCAAAGAAGGAAATATGAAGGTTGAATAAGCCAAGAATGGCTTGGAAAGAAGGGTGGGGAGAGAATCTCTTATGAGAAATTTATGGAGTGAACTTGGGGAGGGATGGGGCAGCTTTGATCTACAACTTTATCTACCCATACCATAGAGTATTCAACGAGAAAAGTCTTTTCCATCTGGTGTTCTCTTTCGAAACTTTTTTGGGGTTATGATCTTGTAAGTTGTACATTCCCATAAAGAATTATGATCTTGTACAAATTGTGGCCAACGGAATTCCTTCTTTTGAACCTTTGCCCTTAGGGACATTTCATCTCCCATTTTTTTTGTATGGTCTCCTCTCCATCAATTTCTTTCTCAATTTCTTCTAAAATTGTTAAAATGATTTTACATACTTTTTTTTCTCCTTATGTTGATTCTTAGACTTTAGGTTTTGTAAATGAAATTTAATAGTATTGTTTATGGAATAGAGTTCATGAGGTATAAGTTTGCTGGTCGAGCCGAGGAGATCGGCGCGGCTTCCTATCTGCACCCGAGAGTTCAACGCGATATAAGTTTGTTGCGCTGACGGCTGGGCTTTCACCGATCTGACGCTGCTGAAGGTCTGGGCGCCGCCATTGATAGGTTCCTTTCCGCACACGACCTGAGGACCATCGATCTGCTGGGTGCGATCCTCCACAGCAAGGCGCGACCCGATCTATCCGCGATCCTCCATGGCTGGGCGCGACTCAATCTGTTCGTCGACGGATTGGGTTGTCTGTCCACCGGCACTCATCTGTTGAAGAAGATGTGGTAAGGCAGCCTCTAGGAACTGTTGGACAACCTCCTTAATCGTGGCAGCCATCTTGGAGTTGGTCGTCGAAGGGACTCATCAATGGCGGCTAGGGTTTCGTCGTCTGTCTCTGATACCATGATGAAAATAAAAGAGGAAGAAGAAGAGAAACACAAATAGTTTACGTGGAAAACCCTAGAACTAGGAAGAAAAAATCACAATAGAGACTTGCTTTTTATTATTGAAGTGATACAAAATATAGGAAGACTTGCTCAAATAAATAGACAGACAGGAAGCCCTAGGGCCATAAGAAAATTACAAATAAGCTCCTAGGCAAACCAACCATTTTCGACAAAATTTAATAGTATTGTTTATGGAATAGAGTTCATGAGGTGGGACATTGAAGATATTGAGATCAGTTAAATTTTCCATGCTGCTTTTTTTTTTTTTTTTTTTTTTTCAGGGTTTTGGGGGACCACTCTTATGGATACCTAGTCTGGTGTTTGCCGAGTTCCTTTACTTCCTTTGCTGTCTGCACCTTGTGTTTGCTTAATAATTTCAAACTTCTTGATAATAATTTCGTATCTTGATATGAAAAGACCCAAAAGCCAGTTTCAAATTAAATTCTTGCACTCTTCTTGCACAGACTTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCGGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAAGCCACCAGCATTGTCAGTAGAGCCCTCTTTAAGACACCACACTGAAAGAACAGGTTTTCCTAAGACGTTACGAGGTCGAGGTATTTTCAGCAACCTACATTTTTTGTTCCCAGTTCGAAATTTATTTTCCAGCTCTAATATCCTTCTTGAGGAGACAATGCTTTTGATCTGTGCCCCTTAGATAATATTGGTATCTCATGTACCTGATTTGTTATATGTGAACTTTGGGTCAATTAAACTCTCATTTCTTCTGATTTAATATGCTTCAACTGGGGTTATTACCATGTGAAAGTTGTACCGAGTAAATTTCATATGGTCTTTAAATATTAGGATGACATATTTAGGCTAGGC

mRNA sequence

TGCAATTAAACCGGTGGTCAAAGAAAATTGATTGACCAAATTGTGAATTGAGGAGGTAAGGTTGAACCACGGCAAAGGCGCGCCCTAATTGCATTGGCATAACCATCGCCGCCATCCATCGAACACAAAATCAGCTCAACGGCGCAGCGCAAGCGAATACAGAAAAGGGGCAGTGGTTTATAGGGTTTTGCAAGTACCATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACTTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCGGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAAGCCACCAGCATTGTCAGTAGAGCCCTCTTTAAGACACCACACTGAAAGAACAGGTTTTCCTAAGACGTTACGAGGTCGAGGTATTTTCAGCAACCTACATTTTTTGTTCCCAGTTCGAAATTTATTTTCCAGCTCTAATATCCTTCTTGAGGAGACAATGCTTTTGATCTGTGCCCCTTAGATAATATTGGTATCTCATGTACCTGATTTGTTATATGTGAACTTTGGGTCAATTAAACTCTCATTTCTTCTGATTTAATATGCTTCAACTGGGGTTATTACCATGTGAAAGTTGTACCGAGTAAATTTCATATGGTCTTTAAATATTAGGATGACATATTTAGGCTAGGC

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACTTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCGGGGTCAAGCCTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGCTATATTGAAGCCACCAGCATTGTCAGTAGAGCCCTCTTTAAGACACCACACTGA

Protein sequence

MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH
Homology
The following BLAST results are available for this feature:
BLAST of Bhi12G000047 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi12G000047 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi12G000047 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Bhi12G000047 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005758mitochondrial intermembrane space
Vocabulary: Biological Process
TermDefinition
GO:0072321chaperone-mediated protein transport
Vocabulary: INTERPRO
TermDefinition
IPR039238Tim8/13
IPR004217Tim10-like
IPR035427Tim10-like_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0072321 chaperone-mediated protein transport
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0001510 RNA methylation
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0005507 copper ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000047Bhi12M000047mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035427Tim10-like domain superfamilyGENE3DG3DSA:1.10.287.810coord: 29..86
e-value: 4.4E-19
score: 69.7
IPR035427Tim10-like domain superfamilySUPERFAMILYSSF144122Tim10-likecoord: 34..84
IPR004217Tim10-likePFAMPF02953zf-Tim10_DDPcoord: 23..82
e-value: 1.8E-20
score: 72.2
NoneNo IPR availablePANTHERPTHR19338:SF0MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM13coord: 1..85
IPR039238Mitochondrial import inner membrane translocase subunit Tim8/13PANTHERPTHR19338TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOGcoord: 1..85