Cucsa.193350 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.193350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial import inner membrane translocase subunit Tim13, putative
Location	scaffold01335 : 302476 .. 305727 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAAGGGTTTAGTCAAAGAAAATTTATTGACCAAATGTGGATTGAAGAGTAAAGAAGGACACCAAAGGCGCGCTCGCCCTAATCGCATTGCCATAGACATCGCCGCCTGCCCTCGAACACAAGATCAGCTCTACGGCGCAGCGCAAACGAATACACGAAGCGGCTGTGGTTTATAGGGTTTTACAACCACCGAACAAATGGATTCGTTTTCATCGCCTTCAAGCGGCTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGGTTTTACTTCTCCCTTACTTGTTTCTTTAATTACTGATATGATGTGCGGATGTATCGTGTAAGAATATCTGCACTTGTTAGAGTAATCGGTTTGATGAATGCGAATTGTTGAGTCTATAGATTTTGGAGTATTCTATCACAACGTCAAGTTGAATCATTTAGGCTTCTTTTGATGACCATTTGGAGCTTTAGAATTGTGCTTGTTTTCTCAACCTTGTAGATTTTCGTATTTCTAGGGAATCATTTGAACTCCAAATTCTAAAATCAAAAAAGAAAAAaCGAGTTTTTCAAAACTGTTCTTTTTTTTtATTAGTTTTCATAACTCGACTTGAATTTTAAAAATCCAACTCATAGGTAGGAATAGTATATAAGTTTCATTTGCAAATTACACAACTTAAATTCTCACTTGTCACTTCCAGTTCAAACTTCTTTTTCATTTCCTCATACTCTTTTTAATAATTAAAGACGTAGAAATGTAAAATTCAGGTGTGGAAGTTCTTTACTGATCGAATGCAGTAGATAAAGAATACTTAATGTTATCTAACTTGTGTTGTTGGATTGATTGATGGATTTTTTTTTTTtCTTGTTGATTTTGAATGGGGAGGGGgAGGGCTAGAGGTAGTACTATTAGGAGGAACAAATTTTCCGGAGAAATCTCCTGAACCTCTAGGCTTCACAAATGGTTCTTTAACATTATGTTATTGTCCATGTGTGGTAGATGACTAGTTCTTTGATTTATTTTTGCTCTAGCCTTCTAGGTATGCATAAATCCTTCATAATGATTAGTACAGACTATAATTTTACTTGGTCTCAGCATTGTTCTACCATAAGATCTTTGGAGTTGTCCACACTATAGACGCTGGGGAAGAAACGGCATAAAGGTTCATTGTTCAGCCAATGGTCCTTCCAAAACAGTGTTTTATTACCTTTGCCTACCTTTGTCTTGTACCGGTTATCAGAAAACTGAATCCACTCCAAAATATGGAGTCAAGGGCCCTTTACTTGGCCGGACCTTTCAACATGGTCTACCAGTCTTTCTCTTCCCAGTTTTTTTGGAAGCGATCACCTTCCTCCACAAAGCCCTCTATTCAGTTGAGAATCTCCAATCCCAGTTGGCCAAGAGAGCCTATTTCTAGTTGCTATTTCTCCAATGCTCAAACCTCCTATTGAAGTAGGGACTAGGGAGGGACATGAGTTCCCAATTTATGAGGCTGTTAATGGGGTGAGGTGCACTCAATGAAATAAATTTTGAATCAGGAAACTTCTTTTTGGGGGAAAAGTCTCTTCTTTTGGGGAAATTGTGTGGGTTTTAGGCAAAATTTGAATCCAATTTTGATTGCCTTATAATAAGTTGGTAGAGAATCCTCGAAGAAGGAAATCTAAAGGTTGAATAAGCTAGGAATGACTTGGAAAAAACGGTGGGAGAGAATGTCTTGTAAAAAATCTTTGAAGGATTGAACTTGGGGAGAGATGGGGCAGCTTTGATGTTTGATCTACAACTTTATCCACCATATCATAGAGTATTCAATTAGGAAAATCTTTCATCTGGTGTTCTCTTTCTGAACTTTTGTTGTTATAATCTTGTACGTTCCCATAAAAAAaTATGATCATTTACAGTGTGGGCGTGTTGCCAACTTGAATTCCTTTTTTAAGCTTTTCTATTAGGGACATCTCATCTCTCTCTCTCTTTTTtATGGTCTCTCCATCAATATATTTCTCAATTTCAGTAAGGGTTAAAATCAAATTACATGTTTTTTTtCCTCTGTTGATTCTTAGACTTTAATTTTTGTGAATAAAATTTAGTAGCTTTGTTTATGGGATAGATCTCATGGGGTAGGACATTGAAGATATTGATGTCAGTTATAATTTCCATGCTGTGTGTTTCTTTCGATTGTCTTGAGGGTTTTAAGGGAGAACTCTTTTGGAAATGTGTTGTGGTATTTGCTGGTTCCTTTACTTCGTTTGCTGTCTGCACCTTGTGTGTGCTTAAAATCTTGCATTTTTCTTGCACAGACCTTAAGAGTGAAGTGCTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCTTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGTTATATTGAAGCAACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTAAAGGAACAGGTTTTCCTGAGACATTATGAGGTCGAGGTATCTTCAGCAACCACCAACCTACATTATTTTtCTTGGTTAGATATTTGTTTTCCAGCTCTAAAATCTTTCTTGAGGAGACAAGTTTTTGATCTGTGCCCCATAGATAATATCGGTATCACGTTCTTTATTTGCTTAACATGTGAACTTCGGGTCATTTAAACTCTCATTTCTTCTGATTTAACATGCTTCAATTGGGTTTATTACCATTTGGGGGTTCATTGTTCATCTATTAATGCAAACTGCTCAACCTAGAATAAATAGTGTACTCTTCAAAATTTTGAAGTTGAGTTAATCTGTTGCCTTGATTTTTATACACTTTTCCAGCTTCTCATAGAATAAATAGTGTACTCTTCAAAATTTTGAATAAaGGAATCAACACTTTTACTTGAAAGTTGATTTAAGTCATTCGTTAATTTTACACAACATTATAAAAGTCATAATTGGTTGATTAATTATAGTATTTTTCTTGCGTTCGATAAACGTTATAAAGAATCTTCAACTTTTGTAATAATAAAGAATCTCATCAAGATCATAACAAAACGCTAAATCGTTTTTCCTATGTTTTTCTCTTATTCTTTCCTCTTCTTTTTCCCTATATTGTCACATACTTGAAGAAAAAAAaGTTTTAAATATATAATATATGCTATAAAGAAATTCACAATTCACGTATTGTCTTCCGAATCAATCATTTTTTCCCTTTCACATACGATGCCGACAAGAAAAACATTCACAATACTA

mRNA sequence

TATTAAGGGTTTAGTCAAAGAAAATTTATTGACCAAATGTGGATTGAAGAGTAAAGAAGGACACCAAAGGCGCGCTCGCCCTAATCGCATTGCCATAGACATCGCCGCCTGCCCTCGAACACAAGATCAGCTCTACGGCGCAGCGCAAACGAATACACGAAGCGGCTGTGGTTTATAGGGTTTTACAACCACCGAACAAATGGATTCGTTTTCATCGCCTTCAAGCGGCTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCTTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGTTATATTGAAGCAACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTAAAGGAACAGGTTTTCCTGAGACATTATGAGGTCGAGGTATCTTCAGCAACCACCAACCTACATTATTTTTCTTGGTTAGATATTTGTTTTCCAGCTCTAAAATCTTTCTTGAGGAGACAAGTTTTTGATCTGTGCCCCATAGATAATATCGGTATCACGTTCTTTATTTGCTTAACATGTGAACTTCGGGTCATTTAAACTCTCATTTCTTCTGATTTAACATGCTTCAATTGGGTTTATTACCATTTGGGGGTTCATTGTTCATCTATTAATGCAAACTGCTCAACCTAGAATAAATAGTGTACTCTTCAAAATTTTGAAGTTGAGTTAATCTGTTGCCTTGATTTTTATACACTTTTCCAGCTTCTCATAGAATAAATAGTGTACTCTTCAAAATTTTGAATAAAGGAATCAACACTTTTACTTGAAAGTTGATTTAAGTCATTCGTTAATTTTACACAACATTATAAAAGTCATAATTGGTTGATTAATTATAGTATTTTTCTTGCGTTCGATAAACGTTATAAAGAATCTTCAACTTTTGTAATAATAAAGAATCTCATCAAGATCATAACAAAACGCTAAATCGTTTTTCCTATGTTTTTCTCTTATTCTTTCCTCTTCTTTTTCCCTATATTGTCACATACTTGAAGaaaaaaaagttttaaatatataatatatGCTATAAAGAAATTCACAATTCACGTATTGTCTTCCGAATCAATCATTTTTTCCCTTTCACATACGATGCCGACAAGAAAAACATTCACAATACTA

Coding sequence (CDS)

ATGGATTCGTTTTCATCGCCTTCAAGCGGCTCTTCTCCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTTGCTCAGGCCTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCTTAAGTGGAAGTGAGAGCAGTTGCATCTCTAGGTGCATGGAGCGTTATATTGAAGCAACCAGCATCGTCAGTAGAGCCCTCTTTAAGACACCACACTAA

Protein sequence

MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATSIVSRALFKTPH*

Homology

[Close]

BLAST of Cucsa.193350 vs. Swiss-Prot
Match: TIM13_ARATH (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-26
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MDSFSSPS-SGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+SSP   GS    S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSRALF 84
          ESSCISRC+ERY+EAT+I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of Cucsa.193350 vs. Swiss-Prot
Match: TIM13_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-26
Identity = 63/85 (74.12%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSS SSGS P   A    DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSE
Sbjct: 1  MDSFSS-SSGSPPNTEA--LMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSRALFKT 86
          SSCISRC++RYIEAT IVSRALF +
Sbjct: 61 SSCISRCVDRYIEATGIVSRALFSS 82

[Close]

BLAST of Cucsa.193350 vs. Swiss-Prot
Match: TI13B_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis GN=timm13-b PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1  MDSFSSPSS---GSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLS 60
          MD F S  S    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL 
Sbjct: 1  MDGFGSDFSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLD 60

Query: 61 GSESSCISRCMERYIEATSIVSRA 82
           SE  C++ CM+RY++A +IVSRA
Sbjct: 61 NSEQKCVAMCMDRYMDAWNIVSRA 84

[Close]

BLAST of Cucsa.193350 vs. Swiss-Prot
Match: TIM13_DANRE (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=timm13 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-13
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MDSFSSP-SSGSSP-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          M+ F S  SSGSS  +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  
Sbjct: 1  MEGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDN 60

Query: 61 SESSCISRCMERYIEATSIVSRA 82
          SE  CI+ CM+RY++A + VSRA
Sbjct: 61 SEQKCIAMCMDRYMDAWNTVSRA 83

[Close]

BLAST of Cucsa.193350 vs. Swiss-Prot
Match: TI13A_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevis GN=timm13-a PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1  MDSFSSPSS---GSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLS 60
          M+ F S  S    S+ +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL 
Sbjct: 1  MEGFGSDFSVGGSSAGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLD 60

Query: 61 GSESSCISRCMERYIEATSIVSRA 82
           SE  CI+ CM+RY++A + VSRA
Sbjct: 61 NSEQKCIAMCMDRYMDAWNTVSRA 84

[Close]

BLAST of Cucsa.193350 vs. TrEMBL
Match: A0A0A0KK66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSRALFKTPH 88
          SSCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cucsa.193350 vs. TrEMBL
Match: D7TVU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02990 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-31
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MDSFS--SPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          MDSFS  SPSSGSSPQ S  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSG
Sbjct: 1  MDSFSTHSPSSGSSPQMSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSG 60

Query: 61 SESSCISRCMERYIEATSIVSRALFKTP 87
          SESSCISRC++RYIEAT I+S+ALF  P
Sbjct: 61 SESSCISRCVDRYIEATGIISKALFSAP 88

[Close]

BLAST of Cucsa.193350 vs. TrEMBL
Match: A0A058ZXS0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.4e-31
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1


Query: 1  MDSFSSPSSGSSP-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFSSPSSGSS  QFS  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGS
Sbjct: 1  MDSFSSPSSGSSSSQFSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATSIVSRALF 84
          ESSCISRC+ERYIEAT I+SRA+F
Sbjct: 61 ESSCISRCVERYIEATGIISRAMF 84

[Close]

BLAST of Cucsa.193350 vs. TrEMBL
Match: M5WNY9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-30
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1  MDSFSSPSSGSSP-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFSSPSSGSS  QF+ + F+DQLK QLAQAYAEEFLETLR KCFDKCITKPGSSL GS
Sbjct: 1  MDSFSSPSSGSSATQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSRALF 84
          ESSCISRCM+RYIEAT I+S+ALF
Sbjct: 61 ESSCISRCMDRYIEATGIISKALF 84

[Close]

BLAST of Cucsa.193350 vs. TrEMBL
Match: B9RYX8_RICCO (Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.0e-30
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 1  MDSFSSPSS-GSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MD+FSSPSS G+  Q S ++  DQ+KTQLAQAYA+EFLET+R KCFDKCITKPGSSLSGS
Sbjct: 1  MDTFSSPSSIGTGSQVSTSDLMDQVKTQLAQAYAQEFLETVRGKCFDKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATSIVSRALFKTPH 88
          ESSCISRC++RYIEAT IVSRALF  PH
Sbjct: 61 ESSCISRCVDRYIEATGIVSRALFNAPH 88

[Close]

BLAST of Cucsa.193350 vs. TAIR10
Match: AT1G61570.1 (AT1G61570.1 translocase of the inner mitochondrial membrane 13)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-27
Identity = 58/84 (69.05%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MDSFSSPS-SGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+SSP   GS    S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSRALF 84
          ESSCISRC+ERY+EAT+I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of Cucsa.193350 vs. TAIR10
Match: AT5G50810.1 (AT5G50810.1 translocase inner membrane subunit 8)

HSP 1 Score: 50.4 bits (119), Expect = 6.4e-07
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 7  PSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCIS 66
          PS  ++P     E    L  +  +A   E +  +   C+DKCIT  PGS  S SESSC++
Sbjct: 3  PSMANNP-----ELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLT 62

Query: 67 RCMERYIEATSIVSR 81
           C +RY++ + I+ +
Sbjct: 63 HCAQRYMDMSMIIMK 72

[Close]

BLAST of Cucsa.193350 vs. NCBI nr
Match: gi|449456285|ref|XP_004145880.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSRALFKTPH 88
          SSCISRCMERYIEATSIVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of Cucsa.193350 vs. NCBI nr
Match: gi|297742475|emb|CBI34624.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MDSFS--SPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          MDSFS  SPSSGSSPQ S  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSG
Sbjct: 1  MDSFSTHSPSSGSSPQMSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSG 60

Query: 61 SESSCISRCMERYIEATSIVSRALFKTP 87
          SESSCISRC++RYIEAT I+S+ALF  P
Sbjct: 61 SESSCISRCVDRYIEATGIISKALFSAP 88

[Close]

BLAST of Cucsa.193350 vs. NCBI nr
Match: gi|731378986|ref|XP_002277915.2| (PREDICTED: LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit Tim13 [Vitis vinifera])

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MDSFS--SPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          MDSFS  SPSSGSSPQ S  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSG
Sbjct: 1  MDSFSTHSPSSGSSPQMSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSG 60

Query: 61 SESSCISRCMERYIEATSIVSRALFKTP 87
          SESSCISRC++RYIEAT I+S+ALF  P
Sbjct: 61 SESSCISRCVDRYIEATGIISKALFSAP 88

[Close]

BLAST of Cucsa.193350 vs. NCBI nr
Match: gi|658063073|ref|XP_008367449.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [Malus domestica])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPS GSS QF+ + F+DQLK QLAQAYAEEFLET+R KCFDKCITKPG+S+ GSE
Sbjct: 1  MDSFSSPSGGSSGQFNPDAFKDQLKNQLAQAYAEEFLETMRSKCFDKCITKPGTSIGGSE 60

Query: 61 SSCISRCMERYIEATSIVSRALFKTPH 88
          SSCISRCM+RYIEAT I+S+ALF   H
Sbjct: 61 SSCISRCMDRYIEATGIISKALFSASH 87

[Close]

BLAST of Cucsa.193350 vs. NCBI nr
Match: gi|747048787|ref|XP_011070415.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Sesamum indicum])

HSP 1 Score: 141.7 bits (356), Expect = 6.0e-31
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPSSGS  +FSA+E  DQLK QLAQAYAEEFLET+R KCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSPSKFSADELMDQLKLQLAQAYAEEFLETVRGKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSRALF 84
          SSCISRC+ERYIEAT I+ RALF
Sbjct: 61 SSCISRCVERYIEATGIIGRALF 83

The following BLAST results are available for this feature:

BLAST of Cucsa.193350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM13_ARATH	2.0e-26	69.05	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
TIM13_ORYSJ	3.4e-26	74.12	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
TI13B_XENLA	1.9e-13	46.43	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
TIM13_DANRE	3.3e-13	48.19	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=...	[more]
TI13A_XENLA	3.6e-12	44.05	Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevi...	[more]

BLAST of Cucsa.193350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK66_CUCSA	2.6e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1	[more]
D7TVU9_VITVI	1.9e-31	80.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02990 PE=3 SV=...	[more]
A0A058ZXS0_EUCGR	5.4e-31	84.52	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1	[more]
M5WNY9_PRUPE	1.6e-30	83.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1	[more]
B9RYX8_RICCO	6.0e-30	77.27	Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricin...	[more]

BLAST of Cucsa.193350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61570.1	1.1e-27	69.05	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	6.4e-07	34.67	translocase inner membrane subunit 8	[more]

BLAST of Cucsa.193350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456285\|ref\|XP_004145880.1\|	3.7e-41	100.00	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumi...	[more]
gi\|297742475\|emb\|CBI34624.3\|	2.7e-31	80.68	unnamed protein product [Vitis vinifera]	[more]
gi\|731378986\|ref\|XP_002277915.2\|	2.7e-31	80.68	PREDICTED: LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase ...	[more]
gi\|658063073\|ref\|XP_008367449.1\|	3.5e-31	77.01	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [M...	[more]
gi\|747048787\|ref\|XP_011070415.1\|	6.0e-31	84.34	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Sesamu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.193350.1	Cucsa.193350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 25..83 score: 7.2
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 23..82 score: 2.3
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 34..84 score: 2.75
None	No IPR available	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..84 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.193350	Csa5G146860	Cucumber (Chinese Long) v2	cgycuB295
Cucsa.193350	MELO3C005802	Melon (DHL92) v3.5.1	cgymeB350
Cucsa.193350	ClCG01G001340	Watermelon (Charleston Gray)	cgywcgB351
Cucsa.193350	CSPI05G04090	Wild cucumber (PI 183967)	cgycpiB304
Cucsa.193350	CmaCh15G013340	Cucurbita maxima (Rimu)	cgycmaB0561
Cucsa.193350	CmaCh02G009530	Cucurbita maxima (Rimu)	cgycmaB0562
Cucsa.193350	CmoCh02G009610	Cucurbita moschata (Rifu)	cgycmoB0563
Cucsa.193350	CmoCh15G013960	Cucurbita moschata (Rifu)	cgycmoB0562
Cucsa.193350	Lsi09G001210	Bottle gourd (USVL1VR-Ls)	cgylsiB328
Cucsa.193350	Cp4.1LG05g07510	Cucurbita pepo (Zucchini)	cgycpeB0543
Cucsa.193350	Cp4.1LG00g00840	Cucurbita pepo (Zucchini)	cgycpeB0541
Cucsa.193350	MELO3C005802.2	Melon (DHL92) v3.6.1	cgymedB345
Cucsa.193350	CsaV3_5G001470	Cucumber (Chinese Long) v3	cgycucB308
Cucsa.193350	Bhi12G000047	Wax gourd	cgywgoB398
Cucsa.193350	Carg21323	Silver-seed gourd	carcgyB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.193350	Silver-seed gourd	carcgyB0798
Cucsa.193350	Watermelon (97103) v2	cgywmbB357
Cucsa.193350	Watermelon (97103) v1	cgywmB373