Carg21323 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21323
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase, subunit TIM13
Location	Cucurbita_argyrosperma_scaffold_128 : 385737 .. 393296 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCATTTTCATCGCCCTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGGTTCAAGTTCTCTCTACTTGTTTCTTTTCTTCCAAATTTGTTGGTTGAGTTATCGATATGTATGTGTATCTGGACCTCTTAGAGTAGTCGGTTTAATGAATGCGTTTCGCTATTGCGTGTTATGTGACGGTTGAAATTAGAGAAATCAATTGGTAATTTCTGGTTTTGATGTTTGGGTAGCGATGCGATCTGGCTTTTAACGATGAGATGTAGGAATTAATCGATGCCAGTTTTTAGGCTGTCGATTTTGTATTTTGGATTTTGGAGTGTTATATCGCAACATCAAACGGAATAGTTTGCGTTCTGTTTTCTCAGTTCTAGTTCGAACTTGTTTTTTATATTCTCATATTTTATTTTTTCTAATTGAAGATGTAGAAATATTAAGTCCATGTGTTCTAGAATTTCTTTTTCGAGGAGTCATTCTTGGTGATTATTAGTTCACAAGAATCTTTTAGTTTTGTGCCTTTGTTTTCGATGAGTCATTCTAGCCGATTTCATGTTGAGGTTAACATAAACGGCTACAAGGGGGCTCTCTCTCTTGTTGTGATTCAGAGTTTCTTCAAGATTAACACACGAGGAAGAGTTAATGAAGGTGGAAGTGGATGATTATAAATAATTTCTCGAGGTTTTGAGAAACAGTCGTGGTTGAACCTTTCTTGCCCTCATCGAAAATTAGAGATGACCACCAGACACGGACTATAGACAAATAGGCCATTTTAGGATTTGATGGGACAATCGTAGGTCATTTATCCTTGGGAAATGCTTACAAAACAACTGGAAACTTGAATGAACGTGGTTCCATATTATGGGGGTGGATGTAAAGGTTAGTTTGGTTAGGCACATTGCACATTGCACATTGATGTCATTATACACAAATCATGATCTTGAAAGGAAAAATAATTTTACTTAGTCCTGGAAAGCTAGTTTTCCATGAAAAGTCACTAAAGGAAAACAAGGGGAAAAAGCTTATTTTTTTTAATTATAAAAAGGCAACTATCCTACCTTACTTTTACTGAGCCCTCTCTTTCACCTCTGGATTCCCAAGATTTCTTCTAAAATTTGAATTTCAGCTACTATTTAAGCCCAACTAGCATTGATCTACCATAGGATCTTTGGAATTCGGCATGCTAAAGATACTAGGGAAGGAAGGACATAAAGGTTCAGTGTTCAGGCAATGATCCTTCCAAAACAGGGTTTTATTACCTTTGCCCTCCTTTGTCTTATACTACTTATTAAAAAAATTGAATGCACTCCGAAATATGGAACTAAGAGCCCTTAAAATGATTGTGCTTTCAATTTCTCTTGCCACTTGTTTTTGGAAGCTATCATCTCTATAGCGGATTGATTTGGAAAAAAAAATAAAAATAAATGTAGACATTTAATCTTGTCGAAAATCACGCGATTTTTGGCGAGGTATTTATTCCCATTTAGGAGCGTACAAGTATCGTAGTTTTATTGTGTAAATCTCTTGTGGACAAACGACGACGAAATTGCACGAAGTTGGCACCGGAAATCCTGTCGGTAACGAATGGGAAAGAAACGAGAGTTTTCGACTGCACTTTCGGACGGAGAAGATGAAGAGTTGGGTCAGTCATTCAGACCCTAGCCGTTTCGATTTAGCCCACAAGTTCTAAGCCCAGGCGAACCAGCAGCCCACGTCGTTTTAGCCTTCAACCCAGTGACCCAATAGTCGCGACCCATACCCATCGTGCGTCGAAGTTGCAAGTTTGTTTACGTTGTCCAGCCCAAAGGAGGTCGAGGCCATTCAGTTTCGGCCCAACCTGACAGCTCGTGTTTTCCTTCAACGCCGCACGTGATCAGCTCTCAACCACGACTCCTTTCAATGCATCCTCGGCTCGGCTTCAACGCATCCTTGGCTTGGCTTTATCGTTTTGCTCTGCTCAGTTTCTCGGCTTAGACGGCTCGATATACTATAATATATCGATTTCTAGGTTTTCGATCATTATGAATCCATTTTTGATCTTATCTAAGTCATTTGAGGTTAGTAAGACTTTTTTCTTTACAAGTTTAATTAGCTTAGGAGCTTATATTGGAATTAATCATGATGTGGAGCTAAGTTAAGTTATTAGTAGGCCCTAAGCATGTTATATGAATTTTCATAGGTAAGAGTTAGGTCTTAGATTGTAGTTTCGAGACGACTACCAAATTGTTAGTGTCTTCAGCCAAGGCCAACCAAGTAAGTGACCTTACTATTGGAGTTAGCCTATTGTTTGATGTATGATGGTGCATGTACCATATTATATGTGTTATGCTTATGTTATGTGATGTTTATGTGATCTTTGTATTAATATGAGACGTATGTCACGTATGCATGTAAACCCATAACACTACTTCTATGAATGAATTGAAACGCTATGAAAGAAATGTTATGTTTTACATTTAAAGTTTTGTGATGGAACATGAGATGTTTGTCATGCGTACTTGTATTATGTCATGAAAGAAAAGAGAAAGGAAATGAAATGTATGTTATGTCATGAATGTAAATCACAGGACCTCATGCATGTTTGTATGTCATATGCATTGGGATACTTTCCCATTATGTTATGATAGTATGGATGCGTACGTTTGATATTTATGTATGCCATGATATCATGCGGACCTTTTCTTTTTGTGGCATCTGGTGGCGTGTAATGTGTTGTGTTCGACCAAGTCGAGCCCAAGGGTACGTATATGAGCCTGTTTGGTGGGCCCATGTGTGCATTCGTGGCCGCGTGTGGAAAAGTACCATGCATCCAACCCTTACCCGAATTTCATGTTTTGAATTGATTAGGCAAGTCCATACCCTTATTTTAAAGATGTTTATTATGAATTTCCGCAATTATGATTTAAGATATTTAGGTTAAGAAAATTAGGGAGTTACAGTTTGGTATCAGAGCCCTAGGTTTTAGATTTGGTAGAGCATACTTCCAGGGTTCTCCAACAAAAGTACTGTCACCGTTTGGTATGCTTTTAAAGGATAATAATTGTTTAGTTAAATGATGCATGCAATATGTTAGTTTTACTATTTTAATTGAGTAAGGTATGATACAATGTATATGTTGTAAATGTTAGCATGATTTATGATGTGGCAAGATTAAATATGTTATATGACGTGACAAGATTAAATATGTTATGACATGTATAATATGATGGTTATGCTAATGTAAAGATTGTATGTATGTGACATGTATTTGTAGGATTGTTTATTGAAGCCTATTAGTTAAGTAGGTGACTAATATGATGGTTATGCTAATGTAAAGATTGTATGTATGTGTGACATGCATTTGTATGATTGTTTATTGAAGCCTATTAGTTAAGTATGTGACTTAGTAGTTACGTGTTTTGTATAGAGTATGCCACCTAGAACACGAGGTGGAGAAATTTGGGGACGACCCCCACCTAGGGGTAGAAGAAGTGTTAGAAGAGGTCGAGGTTCGGAACGGGATAATTCTGTAAACCAGCCCGATGTAACTGTACCACTCCCACCACCAGTGATACCTCTAGCCGCACCAAACCCTATTGCTGCTCTAATAGAAGCATTGCAAGCTGTTGTGCAAATTATGATGACTACTCAACAGGCAAATGCTTCATCATCAACTAGACAAGCAAAGTGTTTGCGAGATTTCAAGAGGGTTGACCCTCAAACCTTTAATGGGTCTTTAGATGATCCAACTGTGGCACAATTATGGTTGAGATCTATAGAGACCGTGTTTGAGTTGATCAATTGCCCTGATGATCAGAAGGTGCGGTGTGCAACATTCATGTTGCGTGATGATGCAGAGTTATGGTGGCAATCCACCAACGAGATTATTAGTCCTGAGGGATGTGTAATCTCGTGGGCGGAATTCAAGGATGCCTTTATGGAAGAGTACTACTCCGAGGACATTCAACTTCGTATGCAGCAAAAGTTCACTCAACTGTGTCAAAGGGGGCGTTCTGTTACCACATATGCTAGGGAGTTCATCAGAATGAAACATTTTGCCCCGGAGTTGGTGAACACTGACTACAGAACAGCATGGTGGTTCGTACGTGGGTTGGACAAGAGGATCCGCCATATTGTTGAGGCGATATCACCTGCTACCTATGCTGCTGCATTGAGAGCAGCTAAGGCCATGGAGGGAGTTGATGAATCTCTTGAACCCCCTCCACAGATAGTGAAACGAAAGCGACGTCATGGCCAGGTTGATCGTCATGATCCATTTCCATCAGAGCCACAACGACGACTTGACAGACAGTACCGTGATACTAGGCGTGGTCAGCAAAGAAATGGAAGCCGACCAGATAATAGACCTCAGTGTAATGAATGTGGGAAAAATCATTGGGGTCAATGTTTGGCCCATACCAGAGCCTGTTTTCAATGTGGAAAGGAGGGTCACATAGCTAAATATTGCCAAGGAGGTTGCGCGAATGATTTTGGAAACCAGTAGAGGAGACTATGCATAGCGGATCGTCGTACTCAGAACTGTCCTCCGACAAGAGCTTATGCCTCTACTGGCAAGGATATTGGGAATTCTGATGCGGTGGTGACAGGTACACTATTTGTTCTTGGTTACCTTGCTTTAACACTATTTGACTCGGGATCTACACATTAATTTATATCTGTTGTTTTTGTTAGTCAAGCAAAATTTGTATTAAAACGTAAAAATTTGTATCAAAACAATTTGTTGCATGAATTCTCTGTTAGCACCTCGACAGGGGTGGACTTGATTGCTGCTTATAGGGTAAAAGATAGTCATGTGTTAGTATTAGGAGTTAACCTCACATGACTGTATATAATGTTGTGGGAATGGAGTGGTTAGTGGAAAATTATTCTATCCTAGACTTTTACAAGAAAGAAGTGATATTTACGCCACCGTCCAAGACCAGTTTCAAATTCAATGGTATGAGTTTAGGAATTATGCTGAAGTGATATCAATGATATCAATGATGAAAGCGAAGAAATTGGTTCAGCACGAAGCGTGGGTCGTACTAGCTAGTGTCATGGATACCAAAAAGGAAGAAACTCCCTTAGCCACAATGTCAGTTGCAAATAAATTTCCTGATGTGTTCCCAGAGGATTTGTCAGGAATTCCTTCGTCACGAGATGTTAATTTTGGAATAGAGTTGGAACCAAGTATGAGTCCTATCTCTAAGGCCTCGTATTGTATGACGCTAGTTGAATTGAAAGAATTCAAATACAACTAATAAAGGATTTATTAGACTCAGCGTTTCTCCTTGGGGTGCGCTGGTGTTATTTGTCAAGAAAAAAGATGGTTCGATGCCCTTGTGCATCGATTACAGGGAGCTGAACAAGAGAACGGTGAAGAACAAGTATCTTCTTCCACGCATTGAGGACTTATTCGATCAACTCGGGGAAGCAACAATGTTCTAAAAAATTGATGTTCAGTTAGGTTACCATTGGATCAAGATAAAAAATGAGGACATATCGAAGACAACTTTCCGAACAAGCTATGACCATTATGAGTTTGTGTTATGTCATTTGGACTCACTAATGCACTTGTAGTGTTCATGGAATTAATGAATTGAGTGTTTAAGAAATGTCTTGATATTTTTGTCATAGTATTCATAGACAATATCTTGGTATACTTGAAGACAGATCAAGCACATCATATGCACCTGAGAAAGACCCTTGACAATTCTGAGGGAAAACAAACTGTATGTCGAGTTTTCGAAGTGTGAATTTTGGTTACGCAAAGTTTCATTTTTGGGGCATGTGGTATCTGAGAAGGGTGTGTCAAGGTGGAAGCCGTTACCAAACGGACTCGTCCAACTACTGTCGTTGAGATACCTAGTTTCTTAGGATTAGCTGGTTACTACTGACGCAAAATAGTCCGCCCCTTCTCAGGATAAATCTGGCTAAAGTAAATTTGCCATCTCTTGACAGGAATAAACTCTTCCAAAGTCCAATTTCCTACACGCTTACACTTTCTCAACAATTGGTTCACAGAAGGACTGCTTCCGATTCCCTCCTAAAGGCGAACCTAGTAGGAGAAAAGCTAGACGCCAGCCACATGCCCATTACTCAACCGTTGCAACCACCTCATGTTCGGAGATTTTTGAAAAAGCTATTACATAGGACTCTTTGAAAGGAAAATGGAAGAATGGGATAACCTTTCAACACTAAACCAAAATCTTGATTCTGTGATCAAAGTTCAGGGTTTTTCTCCACCGAGTCTCCTTTGGTAGCTCTGCAAGCGTCGGTAATGAGTGCCTTTTGTAACTATTCACTAGGTCACATTTTGCTAGATTGGAAGCCTTTGCTCTAGGGTGCACCCTTTTATAGGCTCTGTTTTTGTATTCTCTTGTATTCTTTCATTTGTTTTCTCAATGCAAGTTGGTTTTTTATTAAAAAAAAAAACACAGATGGAAGGGCTTCCAAATCAAATGTTTGGATGCGTGCCTATCAGAAGGACGTTGGACCTATATTGACTTTGTATAATTGGTGTCTAACACGTCAATTGCACTAATAAATGTCCAATACGTGTTCAACAAGTGTCGAAGTGTTTTTCAGACATGGATACTCTAACGAACTAAAGTGTTCATGCTTGTTAGCCTAGAATGATAAACGGACAGATGGCCTCTGCAATATTCTTCACATTTTTACCATGTTCTTGAACCTTAAAGATTAATGTGAGGAAAGTTATGATTTGGGTATCTATATTTGTGATCCGAAGGTGCCACAACCAGGTATTAGACAAGCCACTGAAGGGGCTAATCGCCCTGCTGACTTCAGTACCCCATATGCCTCTTGGAGGAAGCCATTACAAAACTCATTGGGAACCTGCTGTATTTAGAGTGGAGAGGGGACTGCCGAAGTTGAAATACACATTGGGGTTCTCCGTAGTTTGCACCTTGTGTGTTCTTTGTAATATTTTCTTGATAATAATTTTCTAGCTTAACAATAATTAGTATTAGTATGTAATCCTTTTCTTTTTTTTTCAATAAGTCAGGAGGTTCAAATTCCCATATTCAGGAGCCAGTCTCTGGCTCTTGCTCTCTCAAAACTAGAGTTAGATTTTTCCCCATTCTCAATTAATTAAGAAACATACTTAGGTGTATCTTGGGCTGTACCTATCTTTTTGCAGCCCACCTAGATGTCCGACTACCGTTTGTCACGTGACAAACTCTTCTTTCTTATTCTTTTTCGAACTATTTTTAAATTTTTTGCTGAAATATGATTTGAGTGAGCTGCAAAAAGATGGGTTGAGCTTAAGATAGACCCAAGTAATGCTCTTATATTTATTATCTTCCCTCAATTTGGGCAAATTTGAGTTACTAACTCGCACTTTCTCGCAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGA

mRNA sequence

ATGGATTCATTTTCATCGCCCTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGGTTCAAACCCAAGTAATGCTCTTATATTTATTATCTTCCCTCAATTTGGGCAAATTTGAGTTACTAACTCGCACTTTCTCGCAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGA

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCCTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGGTTCAAACCCAAGTAATGCTCTTATATTTATTATCTTCCCTCAATTTGGGCAAATTTGAGTTACTAACTCGCACTTTCTCGCAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGA

Protein sequence

MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELLTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKTPH

Homology

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BLAST of Carg21323 vs. NCBI nr
Match: PPS08638.1 (hypothetical protein GOBAR_AA12034 [Gossypium barbadense])

HSP 1 Score: 119.8 bits (299), Expect = 6.2e-24
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MDSFSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLEV-----QTQVMLLYLLSSLN- 60
           MDSFS+ SSG+ S Q S +EFRDQ+K QLAQAYA+EFLEV     +   +L +LLS LN 
Sbjct: 1   MDSFSTGSSGTGSPQISTDEFRDQMKAQLAQAYAQEFLEVALKPRKAATILRFLLSGLNP 60

Query: 61  ---------LGKFELLTRT------FSQTLRVKCFDKCITKPGSSLSGSESSCISRCMER 112
                       F  +T+        ++T+R KCF+KCI+KPG+SLSGSESSCISRC++R
Sbjct: 61  STPFDLACLNSSFSFVTKACLCRSLLTKTVRGKCFEKCISKPGTSLSGSESSCISRCVDR 120

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BLAST of Carg21323 vs. NCBI nr
Match: PIM98815.1 (Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus impetiginosus])

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 68/111 (61.26%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60
           MDSFSSPSSGSS ++S  +  DQLK QLAQAYAEEFLE                      
Sbjct: 1   MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLE---------------------- 60

Query: 61  TRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALF 112
                 T+R KCF+KCITKPGSSLSGSESSCISRC ERYIEATGI+ RALF
Sbjct: 61  ------TVRGKCFEKCITKPGSSLSGSESSCISRCTERYIEATGIIGRALF 83

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BLAST of Carg21323 vs. NCBI nr
Match: XP_017232208.1 (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Daucus carota subsp. sativus])

HSP 1 Score: 112.5 bits (280), Expect = 9.8e-22
Identity = 66/115 (57.39%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 1   MDSFSSPSS--GSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFE 60
           MDSFSSPS+  GSS   S  +F +QLKTQLAQAYAEEFLE                    
Sbjct: 1   MDSFSSPSASGGSSPPISQEDFMNQLKTQLAQAYAEEFLE-------------------- 60

Query: 61  LLTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKT 114
                   T+R KCFDKCITKPGSSLSG +SSCISRC++RY+EATGI+SRALF +
Sbjct: 61  --------TVRGKCFDKCITKPGSSLSGGDSSCISRCVDRYMEATGIISRALFSS 87

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BLAST of Carg21323 vs. NCBI nr
Match: XP_024994472.1 (mitochondrial import inner membrane translocase subunit Tim13 [Cynara cardunculus var. scolymus] >KVH95327.1 Tim10/DDP family zinc finger [Cynara cardunculus var. scolymus])

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 67/114 (58.77%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 1   MDSFSSPSSGS-SSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFEL 60
           MDSFSSPSS S     S  +F DQLK QLAQAYAEEFLE                     
Sbjct: 1   MDSFSSPSSSSXXXXMSAEDFMDQLKVQLAQAYAEEFLE--------------------- 60

Query: 61  LTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKT 114
                  T+R KCFDKCITKPGSSLSG ESSCISRC++RYIEATGI+SRALF +
Sbjct: 61  -------TVRGKCFDKCITKPGSSLSGGESSCISRCVDRYIEATGIISRALFNS 86

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BLAST of Carg21323 vs. NCBI nr
Match: EPS72196.1 (hypothetical protein M569_02563 [Genlisea aurea])

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60
           MDSFSSPS GS+S+ S  +  DQLK QLAQAYAEEFLE                      
Sbjct: 1   MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLE---------------------- 60

Query: 61  TRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALF 112
                 T+R KCF+KCITKPGSSLSGSE SCISRC++RYIEAT IV RALF
Sbjct: 61  ------TVRGKCFEKCITKPGSSLSGSEGSCISRCVDRYIEATTIVGRALF 83

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BLAST of Carg21323 vs. TAIR10
Match: AT5G50810.1 (translocase inner membrane subunit 8)

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 72  CFDKCITK-PGSSLSGSESSCISRCMERYIEATGIVSR 109
           C+DKCIT  PGS  S SESSC++ C +RY++ + I+ +
Sbjct: 35  CWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

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BLAST of Carg21323 vs. Swiss-Prot
Match: sp|Q6DGJ3|TIM13_DANRE (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=7955 GN=timm13 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 42/111 (37.84%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 1   MDSFSSP-SSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFE 60
           M+ F S  SSGSSS +       +Q+K Q+A A A+E L+  T                 
Sbjct: 1   MEGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTD---------------- 60

Query: 61  LLTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRA 110
                       KCF KCI KPGS+L  SE  CI+ CM+RY++A   VSRA
Sbjct: 61  ------------KCFKKCIGKPGSTLDNSEQKCIAMCMDRYMDAWNTVSRA 83

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BLAST of Carg21323 vs. Swiss-Prot
Match: sp|Q8AVK1|TI13B_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis OX=8355 GN=timm13-b PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 40/112 (35.71%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 1   MDSFSSPSS---GSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKF 60
           MD F S  S    SS +       +Q+K Q+A A A+E L+  T                
Sbjct: 1   MDGFGSDFSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTD--------------- 60

Query: 61  ELLTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRA 110
                        KCF KCI KPG SL  SE  C++ CM+RY++A  IVSRA
Sbjct: 61  -------------KCFRKCIGKPGGSLDNSEQKCVAMCMDRYMDAWNIVSRA 84

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BLAST of Carg21323 vs. Swiss-Prot
Match: sp|Q10481|TIM13_SCHPO (Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim13 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 72  CFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSR 109
           CFDKCI +PGS+   +E SC+S+CMERY++A  IVSR
Sbjct: 45  CFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSR 81

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BLAST of Carg21323 vs. Swiss-Prot
Match: sp|Q9Y5L4|TIM13_HUMAN (Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX=9606 GN=TIMM13 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07
Identity = 39/107 (36.45%), Postives = 49/107 (45.79%), Query Frame = 0


Query: 4   FSSPSSGS-SSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELLTR 63
           F S   GS S +  P    +Q+K Q+A A A+E L+  T                     
Sbjct: 5   FGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTD-------------------- 64

Query: 64  TFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRA 110
                   KCF KCI KPG SL  SE  CI+ CM+RY++A   VSRA
Sbjct: 65  --------KCFRKCIGKPGGSLDNSEQKCIAMCMDRYMDAWNTVSRA 83

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BLAST of Carg21323 vs. Swiss-Prot
Match: sp|Q4I6B0|TIM13_GIBZE (Mitochondrial import inner membrane translocase subunit TIM13 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=TIM13 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.0e-07
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 62  RTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRA 110
           RT  + L+  CF+KC+ KPG+SLS  E++C++ CME+Y+ A  +V+ A
Sbjct: 24  RTLIEKLQETCFEKCVPKPGTSLSSGETTCMTSCMEKYMAAWNMVNSA 71

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BLAST of Carg21323 vs. TrEMBL
Match: tr|A0A2P5XZ66|A0A2P5XZ66_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12034 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MDSFSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLEV-----QTQVMLLYLLSSLN- 60
           MDSFS+ SSG+ S Q S +EFRDQ+K QLAQAYA+EFLEV     +   +L +LLS LN 
Sbjct: 1   MDSFSTGSSGTGSPQISTDEFRDQMKAQLAQAYAQEFLEVALKPRKAATILRFLLSGLNP 60

Query: 61  ---------LGKFELLTRT------FSQTLRVKCFDKCITKPGSSLSGSESSCISRCMER 112
                       F  +T+        ++T+R KCF+KCI+KPG+SLSGSESSCISRC++R
Sbjct: 61  STPFDLACLNSSFSFVTKACLCRSLLTKTVRGKCFEKCISKPGTSLSGSESSCISRCVDR 120

[Close]

BLAST of Carg21323 vs. TrEMBL
Match: tr|A0A2G9G0G4|A0A2G9G0G4_9LAMI (Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28700 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-24
Identity = 68/111 (61.26%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60
           MDSFSSPSSGSS ++S  +  DQLK QLAQAYAEEFLE                      
Sbjct: 1   MDSFSSPSSGSSPKYSAEDLMDQLKVQLAQAYAEEFLE---------------------- 60

Query: 61  TRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALF 112
                 T+R KCF+KCITKPGSSLSGSESSCISRC ERYIEATGI+ RALF
Sbjct: 61  ------TVRGKCFEKCITKPGSSLSGSESSCISRCTERYIEATGIIGRALF 83

[Close]

BLAST of Carg21323 vs. TrEMBL
Match: tr|A0A103XR36|A0A103XR36_CYNCS (Tim10/DDP family zinc finger OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_002614 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-22
Identity = 67/114 (58.77%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 1   MDSFSSPSSGS-SSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFEL 60
           MDSFSSPSS S     S  +F DQLK QLAQAYAEEFLE                     
Sbjct: 1   MDSFSSPSSSSXXXXMSAEDFMDQLKVQLAQAYAEEFLE--------------------- 60

Query: 61  LTRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKT 114
                  T+R KCFDKCITKPGSSLSG ESSCISRC++RYIEATGI+SRALF +
Sbjct: 61  -------TVRGKCFDKCITKPGSSLSGGESSCISRCVDRYIEATGIISRALFNS 86

[Close]

BLAST of Carg21323 vs. TrEMBL
Match: tr|S8D476|S8D476_9LAMI (Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60
           MDSFSSPS GS+S+ S  +  DQLK QLAQAYAEEFLE                      
Sbjct: 1   MDSFSSPSDGSASKISSEDLMDQLKRQLAQAYAEEFLE---------------------- 60

Query: 61  TRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALF 112
                 T+R KCF+KCITKPGSSLSGSE SCISRC++RYIEAT IV RALF
Sbjct: 61  ------TVRGKCFEKCITKPGSSLSGSEGSCISRCVDRYIEATTIVGRALF 83

[Close]

BLAST of Carg21323 vs. TrEMBL
Match: tr|D7KVJ2|D7KVJ2_ARALL (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_893356 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-21
Identity = 62/111 (55.86%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLEVQTQVMLLYLLSSLNLGKFELL 60
           MDS+SSP  G  +  SP    +Q+KTQLAQAYAEEF+E                      
Sbjct: 1   MDSYSSPPVGGGASPSPEVLMEQVKTQLAQAYAEEFIE---------------------- 60

Query: 61  TRTFSQTLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALF 112
                 T+RVKCFDKCITKPGSSL GSESSCISRC +RYIEATGI+SR+LF
Sbjct: 61  ------TVRVKCFDKCITKPGSSLGGSESSCISRCFDRYIEATGIISRSLF 83

The following BLAST results are available for this feature:

BLAST of Carg21323 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS08638.1	6.2e-24	55.64	hypothetical protein GOBAR_AA12034 [Gossypium barbadense]	[more]
PIM98815.1	1.4e-23	61.26	Mitochondrial import inner membrane translocase, subunit TIM13 [Handroanthus imp...	[more]
XP_017232208.1	9.8e-22	57.39	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Daucus...	[more]
XP_024994472.1	1.3e-21	58.77	mitochondrial import inner membrane translocase subunit Tim13 [Cynara cardunculu...	[more]
EPS72196.1	1.7e-21	58.56	hypothetical protein M569_02563 [Genlisea aurea]	[more]

BLAST of Carg21323 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50810.1	2.7e-05	50.00	translocase inner membrane subunit 8	[more]

BLAST of Carg21323 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6DGJ3\|TIM13_DANRE	1.2e-07	37.84	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio OX=...	[more]
sp\|Q8AVK1\|TI13B_XENLA	1.6e-07	35.71	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
sp\|Q10481\|TIM13_SCHPO	2.1e-07	62.16	Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharom...	[more]
sp\|Q9Y5L4\|TIM13_HUMAN	2.7e-07	36.45	Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens OX...	[more]
sp\|Q4I6B0\|TIM13_GIBZE	8.0e-07	45.83	Mitochondrial import inner membrane translocase subunit TIM13 OS=Gibberella zeae...	[more]

BLAST of Carg21323 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5XZ66\|A0A2P5XZ66_GOSBA	4.1e-24	55.64	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12034 PE=3 SV...	[more]
tr\|A0A2G9G0G4\|A0A2G9G0G4_9LAMI	9.1e-24	61.26	Mitochondrial import inner membrane translocase, subunit TIM13 OS=Handroanthus i...	[more]
tr\|A0A103XR36\|A0A103XR36_CYNCS	8.5e-22	58.77	Tim10/DDP family zinc finger OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccr...	[more]
tr\|S8D476\|S8D476_9LAMI	1.1e-21	58.56	Uncharacterized protein OS=Genlisea aurea OX=192259 GN=M569_02563 PE=3 SV=1	[more]
tr\|D7KVJ2\|D7KVJ2_ARALL	3.2e-21	55.86	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005758	mitochondrial intermembrane space

Vocabulary: **Biological Process**
Term	Definition
GO:0072321	chaperone-mediated protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR039238	Tim8/13
IPR004217	Tim10-like
IPR035427	Tim10-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21323-RA	Carg21323-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035427	Tim10-like domain superfamily	GENE3D	G3DSA:1.10.287.810		coord: 60..114 e-value: 3.3E-17 score: 63.7
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	SSF144122	Tim10-like	coord: 65..112
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 66..110 e-value: 1.1E-16 score: 60.1
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..113
None	No IPR available	PANTHER	PTHR19338:SF0	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM13	coord: 1..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21323	Csa5G146860	Cucumber (Chinese Long) v2	carcuB0390
Carg21323	MELO3C005802	Melon (DHL92) v3.5.1	carmeB0364
Carg21323	ClCG01G001340	Watermelon (Charleston Gray)	carwcgB0352
Carg21323	CSPI05G04090	Wild cucumber (PI 183967)	carcpiB0395
Carg21323	Cucsa.193350	Cucumber (Gy14) v1	carcgyB0419
Carg21323	CmaCh02G009530	Cucurbita maxima (Rimu)	carcmaB0507
Carg21323	CmaCh15G013340	Cucurbita maxima (Rimu)	carcmaB0505
Carg21323	CmoCh15G013960	Cucurbita moschata (Rifu)	carcmoB0488
Carg21323	CmoCh02G009610	Cucurbita moschata (Rifu)	carcmoB0490
Carg21323	Lsi09G001210	Bottle gourd (USVL1VR-Ls)	carlsiB327
Carg21323	Cp4.1LG05g07510	Cucurbita pepo (Zucchini)	carcpeB0505
Carg21323	Cp4.1LG00g00840	Cucurbita pepo (Zucchini)	carcpeB0501
Carg21323	CsGy5G001340	Cucumber (Gy14) v2	carcgybB0370
Carg21323	MELO3C005802.2	Melon (DHL92) v3.6.1	carmedB0369
Carg21323	CsaV3_5G001470	Cucumber (Chinese Long) v3	carcucB0394
Carg21323	Bhi12G000047	Wax gourd	carwgoB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21323	Silver-seed gourd	carcarB385
Carg21323	Watermelon (97103) v1	carwmB0352
Carg21323	Watermelon (97103) v2	carwmbB0376