CmoCh02G009610 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G009610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial import inner membrane translocase subunit Tim13, putative
Location	Cmo_Chr02 : 5895463 .. 5898934 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTGTGTCGCCGTCGCCTCCCTCGAAAACAAAATCAGCTCTGGGGCGCAACCAAACTACAAATAGGCAGTGGTTTATAGGGTTTTGCAACTACCGAACACCGAACAAATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCAGAGGAGTTTCTTGAGGTTCAATTCTCCCTTACTTGTTTCTTTTCTACTAAACTTGTTGGTCGAGTTACCGATATGTATGTGCGGCTGTACGTATATCTGGACTTCTTAGAGTATTCGGTTTGATGAATGCGTTTCACTTTTATATGTTATGTGATAGTAGAAATGAATTCGGAATTTCTGGGTCTAAAGCTTGAGTAGCGCTAGGAGCTGGCTTTTGAAGATGGGATGTAAGAATTTATCAATGTGAATTGTCGAGACTACAGATTTTGGAGTATTCTTTCTCAACATTAAATGGAATCCTTTACATGCGCATTTCTCAGTTATAGTTCGAACTTGTTTTTTATATCCTCATTTTTTAAATTTGCTAATTGAAGATGTAGAAATGTTCAATCCATTTAGAATTTCTTCAGTGATTTGAGTGCAATGGAAATAAAGTACTTGATCTTGCTCTCTGTTTCTAGAGTTTTTTTTCGGTTTGGTGATTATAAGTTAGCAACTATCTTGTAGTTTTGTTGTCTAACTTGTTTTGTAGGATTTATTGACAGAATAGTTTTTCTGCTCGTTGTTTTTGACGCGGAAGGGGAGTGGCTAGTACTAGTAGGACGAGCAAACTTTCTGAAATAAATTTCTTGAACCTTATAATTAGTGCCTTAGCATGAAACTATTATTGGTCTGTGGTAAAGGACACGTTCTTTAATTTACTCTCACTGTAAGTTTTTATAAAGATCAGTACAGACTATGGTTTTACTTGGATCAAAAAGTTCTCTAATAAGATAGGGACTTTTGTGAAGAGGTCTTGAGAAATTGGAGAGTGAAGAATCTTATTGTTCCTATTTAGGTTAACAGGAAGGGCTAGAAGGGATTTTCTTTGTGATTCAGAATTTCTTCAAGATCAACACGTTGGAAAGTGTTTGTGCATGTGGAACGAAAGATTAGAAATCATTTCTAGATATTTTAACAAACGATTTAGGCCCCTACCAGAACCCTGAAAAGGGTTGATCATAGTGGTTGAACCTTGCTTGCCCCTAGAAGGATAAATCAACTGATGATATCCTCAATATTCTTCACATTATTACCAACCCTTAAGTTTGATGCGAGGAAAGTTGTGATTGTGGCCATCTATTTGTGTCATCTGGAGGTGCAACATTTAGCTATTAGATAAGGCATATGTATTCATGTCATCTGGAGTTGCAACAGCTTGCTATTAGACAAGGCACATCAAGAGGCACAGAAGGGGCCAGTCATCCCTGCAGACTTCAGTACCCCATATGCCTCTTGGAGGAACCCATTAAAAAGAACATTTCCAATTGCCGTATTTAAAGGAAAGCATCTTACGGTGTTTGGTCAATTGATGTTGTCTAGTACCCCTATGTATTCTTTCTCTTTTTAGATCCGATGTACTTCACTTAAGGAGATTTAAAAGAAAATGAGGCTCTTTGGGCTAGCAGTTATCTCGGAAATGGGAAAATTGCATTTTTGGAATAATGGCAACCTGCACAAATTTTTTTGCTGTGTTCAATTGAAACTACGAAGGGAAGGTAAGAAAAAGAAAAGGATGGCTGTAGAATAATAATGGGGTTAATGCTATGATTCCGTGACTTTATAGTCTAGGCCACTATGATTGAGATACACCATCTTCTTCTTATCATGCTCACTCATAGGATGAAAATACTGTTGATATTGACCGAAATATCGGTAAAGTTGAATTTTTGAAAACGAGATAAAGGGGAGAGTCATTTTTCCAAAACATCAAGGATATTGTCGATATTTGTTGATATTTTATTGATATTTTACGGATATTTTTCTGATACTTTATCTAATATCCGTGATATTTTGCTTATATTCATGACACTTTGTTGCTTTTCTTCTCTCTCGATTACAACATATACCTTGATTTATCACACTTTAAAACGGTATAGTGTGAGTTTTAGGGCTAGGCCAAGAATTTAGGGTCACAAATCCATACCCAAATCATATTAAAAATCTTTGTCTCAAATGTCTCCTTCATTGTTTTTCTTATACAATTATCAATAACATATTAATGATTGTCTACTCCCAAAAAGATATCTTGTTATTGTTAAATGATGTATTTGTGTGTTGACATGACTATAAATTAATTAATTAATCAAAATTTTATATATATTTTTAGATACATTATTTTACTATCTATTTTCATATTAATGTATATGGTAATGTTATAAATGTTTAAAATGATTGTTTATGACTTAAATAAGTTTTCTGGGATGTTTATTAAGAAATTTATAAAATTTCAACAATTTTGTGATATCTTTGATTTTTTCTGGAATACTTGTCTGTTATTTGAGTTATCGATATATATATATATATTGTAATTCCATACTAATTTTTACTGCAAAAGATATGACGAAAATATCGACAACTCAAATAACAGACAAGTATTCCATTTCTGCGAATAGAAACTAATAGTTTTATTTATGGGATAAATCTCAGGAGGGTAGGACATTGAAAATACTGAGTTCAGTAGAATTTTCATTCCTGCAAGATTTCAGTTGTCAAGGGTTTTTGGGAGCATACCTATGGGTCTGTGGTGTTATGTTTGCCGGTTCTTTTGCAGTTTGCACCTTGTGTGCTCTTTGTAATATCAAACTTGGTTATAGTTTTGTATCTTGATAAAAGATCTAAAAGCCGGATTCAAATTAGGTATTTGATTTTTTTTTTTTTTTTCTCGCAATTAAAAATTTTTCATTTATATTTCCTGCACTGCGTATGTTCCTTGTAGCAGCATCATGGTTCTTGAATTTAGTTGCGATTAATGAAATGAACTTTCCAACAATTTGGAGTTGCCAATTGCACTTTTTTGCAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGAAGGAAAGGTTTTGCCTGAGAGATTACGAGTTTGAGGTATCTTTAGCAACCTACAATTTTTCTGAGATTCCCCATTTGATATTTGTTTTCCAGATCTTGAATCTTTCGCAAGGAGAAGTACTTTTGATTTGAGACCCCATAGATAATATTGGTATCATTTACCTGTTTACAAACATGTCAACTTTGGGTCAATTAATCTCTCATTCCTTCTCAGTTAACTTCTCTACCAAGCTGATATGATTCTATTGGTCGGATAAAGTAAATAGATGAGTGGC

mRNA sequence

CTAATTGTGTCGCCGTCGCCTCCCTCGAAAACAAAATCAGCTCTGGGGCGCAACCAAACTACAAATAGGCAGTGGTTTATAGGGTTTTGCAACTACCGAACACCGAACAAATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCAGAGGAGTTTCTTGAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGAAGGAAAGGTTTTGCCTGAGAGATTACGAGTTTGAGGTATCTTTAGCAACCTACAATTTTTCTGAGATTCCCCATTTGATATTTGTTTTCCAGATCTTGAATCTTTCGCAAGGAGAAGTACTTTTGATTTGAGACCCCATAGATAATATTGGTATCATTTACCTGTTTACAAACATGTCAACTTTGGGTCAATTAATCTCTCATTCCTTCTCAGTTAACTTCTCTACCAAGCTGATATGATTCTATTGGTCGGATAAAGTAAATAGATGAGTGGC

Coding sequence (CDS)

ATGGATTCATTTTCGGCACCATCAAGCGATTCTTCCCAATTTTCTGCCAATGAATTCAGGGATCAGCTCAAGACTCAGCTAGCCCAGGCCTACGCAGAGGAGTTTCTTGAGACCTTAAGAGTAAAGTGTTTTGACAAGTGTATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAAAGCAGTTGCATCTCCAGGTGCATGGAGCGCTATATTGAGGCTACTAGCATCGTCAGTGGAGCCCTGTTTAAGACACCACACTGA

Homology

[Close]

BLAST of CmoCh02G009610 vs. Swiss-Prot
Match: TIM13_ARATH (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRC+ERY+EAT+I+S +LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of CmoCh02G009610 vs. Swiss-Prot
Match: TIM13_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 5.8e-23
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 60
          MDSFS  SS  S  +     DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSES
Sbjct: 1  MDSFS--SSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSES 60

Query: 61 SCISRCMERYIEATSIVSGALFKT 85
          SCISRC++RYIEAT IVS ALF +
Sbjct: 61 SCISRCVDRYIEATGIVSRALFSS 82

[Close]

BLAST of CmoCh02G009610 vs. Swiss-Prot
Match: TI13B_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis GN=timm13-b PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-12
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 4  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCI 63
          FS   S S +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  C+
Sbjct: 8  FSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCV 67

Query: 64 SRCMERYIEATSIVSGA 81
          + CM+RY++A +IVS A
Sbjct: 68 AMCMDRYMDAWNIVSRA 84

[Close]

BLAST of CmoCh02G009610 vs. Swiss-Prot
Match: TI13A_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevis GN=timm13-a PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 4  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCI 63
          FS   S + +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  CI
Sbjct: 8  FSVGGSSAGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 67

Query: 64 SRCMERYIEATSIVSGA 81
          + CM+RY++A + VS A
Sbjct: 68 AMCMDRYMDAWNTVSRA 84

[Close]

BLAST of CmoCh02G009610 vs. Swiss-Prot
Match: TIM13_DANRE (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=timm13 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-11
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 4  FSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCI 63
          FS+ SS S +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  SE  CI
Sbjct: 8  FSSGSS-SGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDNSEQKCI 67

Query: 64 SRCMERYIEATSIVSGA 81
          + CM+RY++A + VS A
Sbjct: 68 AMCMDRYMDAWNTVSRA 83

[Close]

BLAST of CmoCh02G009610 vs. TrEMBL
Match: A0A0A0KK66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-36
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSGALFKTPH 87
          SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of CmoCh02G009610 vs. TrEMBL
Match: A0A058ZXS0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-28
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 1  MDSFSAPSS--DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFS+PSS   SSQFS  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGS
Sbjct: 1  MDSFSSPSSGSSSSQFSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRC+ERYIEAT I+S A+F
Sbjct: 61 ESSCISRCVERYIEATGIISRAMF 84

[Close]

BLAST of CmoCh02G009610 vs. TrEMBL
Match: M5WNY9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.3e-28
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MDSFSAPSSDSS--QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFS+PSS SS  QF+ + F+DQLK QLAQAYAEEFLETLR KCFDKCITKPGSSL GS
Sbjct: 1  MDSFSSPSSGSSATQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRCM+RYIEAT I+S ALF
Sbjct: 61 ESSCISRCMDRYIEATGIISKALF 84

[Close]

BLAST of CmoCh02G009610 vs. TrEMBL
Match: B9RYX8_RICCO (Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.7e-27
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 1  MDSFSAPSS--DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MD+FS+PSS    SQ S ++  DQ+KTQLAQAYA+EFLET+R KCFDKCITKPGSSLSGS
Sbjct: 1  MDTFSSPSSIGTGSQVSTSDLMDQVKTQLAQAYAQEFLETVRGKCFDKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALFKTPH 87
          ESSCISRC++RYIEAT IVS ALF  PH
Sbjct: 61 ESSCISRCVDRYIEATGIVSRALFNAPH 88

[Close]

BLAST of CmoCh02G009610 vs. TrEMBL
Match: A0A103XR36_CYNCS (Tim10/DDP family zinc finger OS=Cynara cardunculus var. scolymus GN=Ccrd_002614 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-27
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1


Query: 1  MDSFSAPSSDS--SQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFS+PSS S  SQ SA +F DQLK QLAQAYAEEFLET+R KCFDKCITKPGSSLSG 
Sbjct: 1  MDSFSSPSSSSPSSQMSAEDFMDQLKVQLAQAYAEEFLETVRGKCFDKCITKPGSSLSGG 60

Query: 61 ESSCISRCMERYIEATSIVSGALFKT 85
          ESSCISRC++RYIEAT I+S ALF +
Sbjct: 61 ESSCISRCVDRYIEATGIISRALFNS 86

[Close]

BLAST of CmoCh02G009610 vs. TAIR10
Match: AT1G61570.1 (AT1G61570.1 translocase of the inner mitochondrial membrane 13)

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-25
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 1  MDSFSAP--SSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+S+P      S  S     + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRC+ERY+EAT+I+S +LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of CmoCh02G009610 vs. NCBI nr
Match: gi|449456285|ref|XP_004145880.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-36
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFS+PSS SS QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATSIVSGALFKTPH 87
          SSCISRCMERYIEATSIVS ALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of CmoCh02G009610 vs. NCBI nr
Match: gi|719963980|ref|XP_010251312.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Nelumbo nucifera])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MDSFSAPSSDSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSES 60
          MDSFS+PSS SSQ SA  F +QLKTQLAQAYAEEFLET+R KCF KCITKPG+SLSGSES
Sbjct: 1  MDSFSSPSSGSSQPSAEAFMEQLKTQLAQAYAEEFLETVRGKCFAKCITKPGTSLSGSES 60

Query: 61 SCISRCMERYIEATSIVSGALFKTP 86
          SCISRC++RYIEAT IVS ALF +P
Sbjct: 61 SCISRCVDRYIEATGIVSRALFSSP 85

[Close]

BLAST of CmoCh02G009610 vs. NCBI nr
Match: gi|702505849|ref|XP_010039650.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Eucalyptus grandis])

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 1  MDSFSAPSS--DSSQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFS+PSS   SSQFS  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGS
Sbjct: 1  MDSFSSPSSGSSSSQFSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRC+ERYIEAT I+S A+F
Sbjct: 61 ESSCISRCVERYIEATGIISRAMF 84

[Close]

BLAST of CmoCh02G009610 vs. NCBI nr
Match: gi|595849839|ref|XP_007209804.1| (hypothetical protein PRUPE_ppa014043mg [Prunus persica])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 1


Query: 1  MDSFSAPSSDSS--QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFS+PSS SS  QF+ + F+DQLK QLAQAYAEEFLETLR KCFDKCITKPGSSL GS
Sbjct: 1  MDSFSSPSSGSSATQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATSIVSGALF 83
          ESSCISRCM+RYIEAT I+S ALF
Sbjct: 61 ESSCISRCMDRYIEATGIISKALF 84

[Close]

BLAST of CmoCh02G009610 vs. NCBI nr
Match: gi|658063073|ref|XP_008367449.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [Malus domestica])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-27
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 1


Query: 1  MDSFSAPSSDSS-QFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFS+PS  SS QF+ + F+DQLK QLAQAYAEEFLET+R KCFDKCITKPG+S+ GSE
Sbjct: 1  MDSFSSPSGGSSGQFNPDAFKDQLKNQLAQAYAEEFLETMRSKCFDKCITKPGTSIGGSE 60

Query: 61 SSCISRCMERYIEATSIVSGALFKTPH 87
          SSCISRCM+RYIEAT I+S ALF   H
Sbjct: 61 SSCISRCMDRYIEATGIISKALFSASH 87

The following BLAST results are available for this feature:

BLAST of CmoCh02G009610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM13_ARATH	1.5e-23	65.48	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
TIM13_ORYSJ	5.8e-23	69.05	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
TI13B_XENLA	7.9e-12	45.45	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
TI13A_XENLA	5.1e-11	44.16	Mitochondrial import inner membrane translocase subunit Tim13-A OS=Xenopus laevi...	[more]
TIM13_DANRE	5.1e-11	46.75	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=...	[more]

BLAST of CmoCh02G009610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK66_CUCSA	4.2e-36	95.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1	[more]
A0A058ZXS0_EUCGR	5.5e-28	80.95	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1	[more]
M5WNY9_PRUPE	9.3e-28	80.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1	[more]
B9RYX8_RICCO	2.7e-27	75.00	Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricin...	[more]
A0A103XR36_CYNCS	3.6e-27	77.91	Tim10/DDP family zinc finger OS=Cynara cardunculus var. scolymus GN=Ccrd_002614 ...	[more]

BLAST of CmoCh02G009610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61570.1	8.6e-25	65.48	translocase of the inner mitochondrial membrane 13	[more]

BLAST of CmoCh02G009610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456285\|ref\|XP_004145880.1\|	6.0e-36	95.40	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumi...	[more]
gi\|719963980\|ref\|XP_010251312.1\|	6.0e-28	80.00	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Nelumb...	[more]
gi\|702505849\|ref\|XP_010039650.1\|	7.9e-28	80.95	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Eucaly...	[more]
gi\|595849839\|ref\|XP_007209804.1\|	1.3e-27	80.95	hypothetical protein PRUPE_ppa014043mg [Prunus persica]	[more]
gi\|658063073\|ref\|XP_008367449.1\|	2.3e-27	74.71	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [M...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
biological_process	GO:0015031	protein transport
biological_process	GO:0008150	biological_process
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G009610.1	CmoCh02G009610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 24..81 score: 2.3
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 22..80 score: 5.0
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 33..83 score: 4.97
None	No IPR available	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..83 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G009610	Cucsa.193350	Cucumber (Gy14) v1	cgycmoB0563
CmoCh02G009610	CmaCh15G013340	Cucurbita maxima (Rimu)	cmacmoB295
CmoCh02G009610	CmaCh02G009530	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G009610	Csa5G146860	Cucumber (Chinese Long) v2	cmocuB604
CmoCh02G009610	MELO3C005802	Melon (DHL92) v3.5.1	cmomeB516
CmoCh02G009610	ClCG01G001340	Watermelon (Charleston Gray)	cmowcgB521
CmoCh02G009610	CSPI05G04090	Wild cucumber (PI 183967)	cmocpiB610
CmoCh02G009610	Lsi09G001210	Bottle gourd (USVL1VR-Ls)	cmolsiB521
CmoCh02G009610	Cp4.1LG00g00840	Cucurbita pepo (Zucchini)	cmocpeB542
CmoCh02G009610	Cp4.1LG05g07510	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G009610	MELO3C005802.2	Melon (DHL92) v3.6.1	cmomedB592
CmoCh02G009610	CsaV3_5G001470	Cucumber (Chinese Long) v3	cmocucB0724
CmoCh02G009610	Bhi12G000047	Wax gourd	cmowgoB0711
CmoCh02G009610	CsGy5G001340	Cucumber (Gy14) v2	cgybcmoB617
CmoCh02G009610	Carg21323	Silver-seed gourd	carcmoB0490

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G009610	CmoCh15G013960	Cucurbita moschata (Rifu)	cmocmoB247

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G009610	Silver-seed gourd	carcmoB0971
CmoCh02G009610	Watermelon (97103) v2	cmowmbB581
CmoCh02G009610	Watermelon (97103) v1	cmowmB568