CmaCh15G013340 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G013340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial import inner membrane translocase subunit Tim13, putative
Location	Cma_Chr15 : 8365827 .. 8374693 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCAAACGCGGCCCACAGCCGTCGCCTCAAATACAAAAGGGCTGTGGTTTATAGGGTTTTGCAAGCTCCGAACAAATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGGTTCAAGTTCACTCTACTTGTTTCTTTTCTTCCAAATTTGTTGGTTGAGTCATCGATCTGTATGTGTATCTGGACCTCTTAGAGTAGTCGGTTTAATGAATGCGTTTCGCTATTGCGTGTTATGTGACGGTTGAAATTAGAGAAATCAATTAGTAATTTCTGGTTTTGATGTTTGGATAGCGATGCGATCTGGCTTTTAACGATGAGATGTAGGAATTAATCGATGCCAGTTTTTAGGCTGTCGATTTTAGATTTTGGATTTTGTAGTGTTCTAACGCAACATCAAACGGAATCGTTTGCGTTCTCTTTTCTCAGTTCTAGTTCGAACTTGTTTTTTATATTCTCATATTTTATTTTTTCTAATTGAAGATGTAGAAATATTAAGTCCATGTGTTCTAGAATTTCTTTTTCGATGAGTCATTCTTGGTGATTATTAGTTCACAAGAATCTTGTAGTTTTGTGCCTTAAACTTATTTTCGATGAGTCATTCTAGCTGATTTCATGTTGAGGTTAACATAAACGGGTAGAAGGGGGCTCTCTCTCTTGTTGTGATTCAGAGTTTCTTCAAGATTAACACACGAGGAAGAGTTAATGAAGGTGGAAGTGGATGATTATAAATAATTTCTCGAGGTTTTGAGAAACAGTCGTGGTTGAACCTTTCTTGCCCTCATCAAAAACTAGAGATGACCACCAGACACGGACTATAGACAAATAGGCCATTTTAGGATTTGATGGGACAATCGTAGGTCATTTATTCTTAGGAAATGCTTACAAAACAGCTGGAAACTTGAATGAACGTGGTTCCATATTATGGGGGTGGATGTAAAGGTTAGTTTGGTTAGGCACATTGCACATTGATGTCATTATACACAAATCATGATCTTGAAAGGAAAAATAATTTTACTTAGTCCTGGAAAGCTAGTTATCCATGAAAAGTCACATTCGGTCAAACACCAAAAACAGGATTCAGTAGTGAAAAAACAAGATAGAGCAAGACTTGAAAACAAGGGGAAAAAACTTATTTTTTTTAATTATATAAAGGCAACTATCCTACCTTACTTTTACTGAGCCCTCTCTTTCACCTCTGGATTCCCAAGATTTCTTCTAAAATTTGAATTTCAGCTACTATTTAAGCCCAACTAGCATTGATCTACCATAGGATCTTTGGACTTCGGCATGCTAAATATACTAGGGAAGGAAGGACATAAAGGTTCAATGTTCAGGCAATGATCCTTCCAAAACAGGGTTTTGTTACCTTTGCCCTCCTTTGTCTTGTACTACTTATTAAAAAAAATTGAATGCACTCCGAAATATGGGACTAAGAGCCCTTAAAATGATTGTGCTTTCAATTTCTCTTGCCACTTGTTTTTGGAAGCTATCATCTCTAACGGATTGATTTGGAAAAAAAAAAATATATATATAGACATTTAATCTTGTCGAAAATCACGCGATTTTCAGCAAGGTATTTATTCCCATTTAGGAGCGTACAAATATTGTGGTTTTATTGTGCAAGGTATTTATTCCCATTTAGGAGCGTACAAATATTGTGGTTTTATTGTGTAAATCTCCTGTGGACAAATGACGACGAAATTGCACAAAGTTGGCGCTGGAAATCTTGTCGGAAACGAATGGGAAAGAAACGAGGGTTTTCGACTGCACTTTCGGACGAAGAAGATGAAGAGTTGGGTCAGTCATTCAGACCCTACTCGTTTCGATTTAGCCCACAAGTTCTAAGCCCAGGCGAACCAGCAGCCCACGTTGTTTTAGCCTTCAACCCAGTGGCTCAACAGTCGCGACCCATACCCATCGCGCGTCTAAGCTGCAAGTTTGTTTACGTTGTCCAGCCCAAAGGAGGTCTAGTCCATTCAGTTTCGGCCCAACCTGACAGCCCGTGTTTTCCTTCAACGCCGCACGTGGCCAACACGTGATCAACTCTCAACCACGACTCCTTTCAATGCATCCTCGGCTCGACTTCAATGCATCCTTGGCTTGGCTTTATCGTTTTGCTCTGCTCAGGTTTATCGTTTTGCTCGGCTCAGTTTCTCGGCTTAGACGGCTCGGTATACTATAATATATCGATTTTTAGGTTTTCGATCATTATGAATCCATTTTTGACCTTATCTAAGTCATTTGAGGTTAGTAAGACTTTTTTTACAAGTTTAATTAGCTTAGGAGCTTATATTGGAATTAAGCATGATGTCCAGCTAAGTTAAGTTAATAGGCCCTAAGCATGTTATATGAATTTTCATAGGTAAGAGTTAGGTGTTAGATTGTAGTTTCGAGACGACTACCAAATTGTTAGAGACTTCAGCCAAGGCCAACCAAGTAAGTGACCTTACTATTGGAGTTAATCACAGGACCTCATGCATGTTTGTATGTCATATGCATCGGGATACTTCCCCATTATGTTATGTTAGTATGGATGCATACATTTGATATTTATGTATGCCATGATATCATGCAGACATTTTCTTTTTGTGGCATCTGGTGGAGTGTAATGCGATGTGTTCGACCAAGTCGAGCCCAGGGGTACGTATACGAGCCTGTTTGGTGGGCCCATGTGTGGAAAAATACCATACATCCAACCCTGCCCCGAATTTCATGTTTTGAATTGATTAGGCAAGTCCATACCCTTATTTTAAAGATGTTTATTATGAATTTCCGTAATTTATGATTTAAGATGTTTAGGTTAAGAAAATTAGGGAGTTACCGTTTGGTATTAGAGCCCTAGGTTTTAGATTTGGTAGAGCATACTTCCAGGGTTCTCCAACAAAAGTACCGTCACCGTTTGGTATGCTTTTAAAGGATAATAATTGTTTAGTTAAATGATGCATGCAATATGTTAATTTTACTATTTTAATTAAGGTATGATACAATTTATATGTTGTAAATGTTAGCATGATTTATGATGTGGCAAGATTAAATATGTTATATGACGTCACAAGATTAAATATGTTATGACAGGTATAATACGATGGTTATGATAATGTAAAGATTGTACGTACGTGTGACATGTATTTGTATGATTGTTTATTGAAGCCTATTAATTAAGTAAGTAACTTAGTAGTTACGTCTTTTGTATAGAGTATGCCACCTAGAACACGAGGTGGAGAAATTTGGGGACGACCCCCACCTATGGGTAGAAGAAGTGGTAGAAGAGGTCGAGGTTCGAAACGGGATAATTCTGTAAACTAGCCCGATGTAACTGTGCCACTCCCACCACCAGCGATACCTCAGGCCGCACCAAACCCTGTTGCTGCTCTAATAGAAGCATTGCAAGCTGTTGTGCAAATTATGATTACTACTCAACCGAGAAATGCTTCATCATCAACTAGACAAGCAAAGTGTTTGCGAGATTTCAAGAGGGTTGACCCTCAAACCTTTAATGGGTCTTCAGATGATCCAACCGTGGCACAATTATGGTTGAGATCTATAGAGATCGTGTTTGAGTTGATCAATTGCCCTGATGATCAAAAGGTGCGGTGTGTAACATTCATGTTGCGTGATGATGCAGAGTTATGGTGGCAGTCCACCAGCGAGATTATTAGTCTTGAGGGATGTGTAATCTCGTGGGCGGAATTCAAGGATGCCTTTATGGAAGAGTACTACTCTGAGGACATTCAATTTCGTATGCAGCAAAAGTTTACTCAAGTCAAAGGGGGCGTTCTGTTACCACATATGCTAGGGAGTTTATCAGAATGAAACATTTTGCCCCAGAGTTGGTGAACACTGACTACAGAACAACATGGTGGTTCGTACGTGGGTTGGACAAGAGGATCCGCCATATTGTTGAGACGTTATCACCTACTACCTATGTTGCTGCATTGAGAGCCGCTAAGGCCATAGAGGGAGTTGATGAATCTCCTGAACCCCCTCCATCGACAGTGAAACGAAAGCAATGTCATGACTAGGTTGATTGTCATGATCCATTGCCATTACAGCCACAACAACGACCTGACAGACAGTACCGTGATACTAGGCGTGGTCAGCAAAGAAATGGAAGCCGACCATATAATAGACCTCAGTGTAATGAGTGTGGGAAAAATCACTGGGGTCAATGTTTGGCCCATACCAGAGCCTGTTTTCAATGTGAAAAGGAGGGTCACAACTAAATATTGCCAAGGAGGTTGCGCGAATGATTTTGGAAACCAGCAGGGGAGACTAAGCATAGCGGATCCTACTCAAAACTGTCCTCCGACAAGAGCTTATGCCTCTACTGGCAAGGATATTGGGAATTTTGATGCGGTGGTGACAGGTACACTATTTGTTCTTGGTTACCTTTCTTTAACACTATTTGACTCGGGATCTACACATTCATTTATATATGTTTTCATTAAGCAAAATTTATATTAAAACGTAAAAATTTGTATCAAAACATTTGTTGCATGAATTCTCTGTTAGCACCTCGGCCAGGGTGGACTTGATTGCTGCTTATAGGGTAAAAGATAGTCTATGTGTTAGTATCAGGACTTAACCTAGAGGTAGATTTAATGGTAGTTCACATGACTGTATATGATGTTGTGGGAATGGATTGGTTAGTGGAAAATTATTCTATCCTAGACTTTTACAAGAAAGAACTGATATTTACGCCACCGTTCAAGACCAGTTTCAAATTCAATGGTATGAGTTTAGGAATTATGCCTGAAGTGATATCAATGATGAAAGCGAAGAAGTTGGTTCAGCACGAAGCGTGGGTCGTATTAGCTAGTGTCATGGATACCAAAAAGGAAGAAACTCCCTTAACCACAATGTCAGTTGCAAATAAATTACTTGATGTGTTCCTAGAGGATTTGTCAAGAATTCCTCCGTCACGAGATGTTAATTTTGGAATAGAGTTGGAACCAAGTATGAGTCCTATCTCTAAGGTCTCGTATTGTATGGCGCTAGTTGAATTGAAAGAATTCTAATACAACTAATAAAGGATTTATTAGACTCAGCGTTTCTCCTTGGGGTGCGCTGGTATTATTTGTCAAGAAAAAAGATGGTTCGATGCCCTTGTGCATCGATTACAGGGAGCTGAACAAAAGAACGGTGAAGAACAAGTATCTTCTTCCACGCATTTAGGACTTATTCGATCAGCTCAGGGAAGCAACAATGTTCTAAAAAATTGACAGTTAGGTTACCACTGGATCAAGATAAAAAATGAGGACATACCGAGACAACTTTCAGAACAAGCTATGGCCATATGAGTTCATGTTATGTCATTTGGACTCACTAATGCATCTGTAGTGTTCATGGAACTGATGAATTGAGTGTTTAAGAAATGTCTTGTTATTTTTGTCATAGTATTCATAGACTATATTTTGGTATACTCGAAGACAGATCAAGAACATCATATGCACTTGAGAAAGATCCTGACAATTCTGAGTGAAAACAAACTATATGTCAAGGTCTCGAAGTGTGAACTTTGGTTACGCGAAGTTTCATTTTTGGGCATGTGGTATCTAAGAAGGGTGTGTCAAGGTGGAAGCCGTTACCAAATGGACTTGTCCAACTACTGTCGTTGAGATACCTAGTTACTTAGGATTAGCTGGTTACTACCGACGTTTCATTCAAGACTTTTGCCAAAATAGCCGCCCCTTCTCGGGATAAATCTGGCTAAAGTTAATTTTCCATCTCTTGACAGGAATAAACTCTTCCAAAGGTCCAATTTCCTACACGCTTACACTTTCTCAACAATTGGTTCGTAGAAGGATTGCTTCCGATTCCCTCTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTATTATAAGGCAAATATCTAATATTTGCCTTATTATCATATGTATCTTTCCATTTATTGTTATTTTCATTTATTACTATTTTCATATCCTTGTAATTCATTTGATTATAAATAAGATAACTTTCACACCATTTTGGTCATTTATTGTTATTTTCATTTATTACTATTTTCATATCCTTGTAATTCATTTGATTATAAATAAGATAACTTTCACACCATTTGGGTGTGGTGGATTAATCAAACATTCACATGGTATCAGAGCTCTCTCGGTTTAACAACCTCGATCCTTTCTTTTCAATGGCTTTTGAATCCTCTAATCTTCTTCTCCACCACCCCTGCTGGTTTTGACGCCGCAGGGGCAGTCTTCATGGCTGCCGTAGTCGGAGCCGATTGATTACTCTTCGGCTCCACCCTATTGACCTCCAAATCACCTTTCGTCATACTCTGTACATACAACCTCACATTTTCCAACCAAATCGGTTTTCCCCTTGGCCAATATAGTCTCTCTCATTTTCTTCCCAATCAACCTATCAATCTTTTGCAGAGATTTACCTTCAGAATCTGGGTGCTGCACTGGCCTATTCGCCAACCAAGTTGCCGCCGCCCTTCCTGCCAAAATTGGCTTCTTCGCCCGATGAGGCGACTCTTCCGACTGCCCTTCTCGCCAAAATTGGCTCCTTCGCCCAATGTGGCGACTCTTCCGACTTCAACATTGTCTTTGTCCCTTACTCTAGGTTTCCCCTTCTACTTCTTGGGGTTATAAATATTCTCACCAGAGCCAAGGCAGCATCGTCGCTAAGCGACAATCCCTCTTCATGGGTTAGACATATTCTCGCCGAAGCCAAGGCAGCATCCCTCTGCAATTTTTGATAGCCAAGAACCGGGTTGTTAGCATCTTCATGAAAAGTGTTTCTCAACCTCTTTGAATTTTTCAGATTCAAGCTTCACGTTCGTTTAAATCCGACGTTTAGCTTGCGGTGGGGTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTTAGATATTTGCCTTATTATCATAGGTATCTTTCCATTTATTGTTATTTCCATTTATTACTATTTTCATATCTTTGTAATTCATTTGATTATAAATAAGATAACTTTCACACTATTTGGGTGTGGTGGATTAATCAAACATTCACACCCTCCCAAAGGCGAACCTAGTAGTAGAAAAGCTAGACGCCAGCCACATGCTCATTACTCAATCGTTGCAACCACCTCATGTTCGGAGATTTTTGAAAAAGCTATAACATAGGACTCTTTGAAAGGAAATGGAAGAATGGGATAACCTTTCAACACTAAACCAAAATCTTTCCGTGATCAAACTTCAGGGTTTTTCTCCACCTGAGTCTGCTTTGGTAGCTCTGCAAGCGTCGGTAATGAGTGCCTTTTGTAACTATTCACTAGGTCACATTTTGCGAGATTGGAAGCCTTTACTCTGGGGTGCACCCTTTTATAGGCTCTGTTTTTGTATTCTCTTGTATTCTTTCATTTGTTTTCTCAATGCAAGTTGGTTTTTTATAAAAAAAAAACATAGATGGAAGGGCTTCCAAATCAAGTGTTTGGATGCGTGCCTATCAGAAGGACGTTGGACCTATATTGACTTTGTATAACTGGTGTCTAACACGTCAATTGCACTAATAAATGTCCAATACGTGTTCAACAAGTGTCGAAGTGTTTTTCAGACATGGATACTCTAACGAACTAAAGTGTTCATGCTTGTTAGCCTAGAATGATAAATGGACAGATGGCCTCTGCAATATTCTTCACATTTTTACCATGTTCTTGAACCTTAAAGATTAATGTGAGGAAAGTTATGATTTGGGTATCTATATTTGTGATCCGAAGGTGTCACAACCAGGTATTAGACAAGCCACTGAAGGGGCTAATCGCCCTGCTGACTTAAGTACCCCATATGCCTCTTGGAGGAAGCCATTACAAAACTCATTGGGAACCTGCTGTATTTAGAGTGGAGAGGGGACTGCAAAAGTTGATATACACATTGGGGTTCTCTGTAGTTTGCACCTTGTGTGTTCTTTGTAATATCTTCTTGATAATAATTTTCTAGCTTAACAGTAATTAGTAGGTAATCCTTTTCTTTAAGTTGGAGGTTCAAATTCCCATATTCATGAGCCAGTCTCTGGGCTGTACCTATCTTTTTGCAGCCCACCTAGATGTCCGACTACACGTGACACGTGACAAACTCTTCTTTCTTATTCTTTTTCGAACTATTTTTGAATTTTTTTGCTGAAATATGATTTGAGTGAGCTGCAAAAAGATGGGTTGAGCTTAAGATAGACCTAAGTAATGCTCTTATATTTATTAATTATCTTCCCTCAATTTGGGCAAATTTGAGTTGCTAACTCGCACTTTCTCGCAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGAAAAGAAAAGGTTTTGCTGAAACATTATGAGGTCCAGGTTTGATATTCCCCGTTCGATATTTGTTATTTAGTTCTTTAATCTCTCTCTACTAGATCACATGGGTCGTTAGTACAGATCCACTTGAACACTCTAATATCTTCCAAGACACGATCGACGTCAATGTCGATCATTATTATCGTTGAAATGTTTTTGTCATTCTCCTTTCTCTTTCTCGTCTTCTTTCTAATCAGTCCCACCGCTGATCAAAACACCCCAACAGCTTTGACAAACTCCCAAAACTGATCAGTGTGCATTGGTCGGTCTGTCGGTTCCATAATTATTCCCAAAATTAACAAA

mRNA sequence

CACCAAACGCGGCCCACAGCCGTCGCCTCAAATACAAAAGGGCTGTGGTTTATAGGGTTTTGCAAGCTCCGAACAAATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGAAAAGAAAAGGTTTTGCTGAAACATTATGAGGTCCAGGTTTGATATTCCCCGTTCGATATTTGTTATTTAGTTCTTTAATCTCTCTCTACTAGATCACATGGGTCGTTAGTACAGATCCACTTGAACACTCTAATATCTTCCAAGACACGATCGACGTCAATGTCGATCATTATTATCGTTGAAATGTTTTTGTCATTCTCCTTTCTCTTTCTCGTCTTCTTTCTAATCAGTCCCACCGCTGATCAAAACACCCCAACAGCTTTGACAAACTCCCAAAACTGATCAGTGTGCATTGGTCGGTCTGTCGGTTCCATAATTATTCCCAAAATTAACAAA

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCTTCAAGCGGTTCTTCTTCCCAATTTTCGCCCAACGAATTCAGGGACCAGCTCAAGACTCAGCTTGCTCAGGCGTACGCCGAGGAGTTTCTTGAGACCTTAAGAGTGAAGTGCTTTGACAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGCGAGAGCAGTTGCATCTCCAGGTGCATGGAACGCTATATTGAGGCCACCGGCATCGTCAGTAGAGCCCTGTTTAAGACACCACACTGA

Protein sequence

MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESSCISRCMERYIEATGIVSRALFKTPH

Homology

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BLAST of CmaCh15G013340 vs. Swiss-Prot
Match: TIM13_ARATH (Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-26
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1  MDSFSSPS-SGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+SSP   GS S  SP    + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALF 84
          ESSCISRC+ERY+EAT I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

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BLAST of CmaCh15G013340 vs. Swiss-Prot
Match: TIM13_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-24
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSS SSGS    +     DQ+K QLAQAYA+EFLET+  KCF KC+TKPGSSLSGSE
Sbjct: 1  MDSFSS-SSGSPP--NTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALFKT 86
          SSCISRC++RYIEATGIVSRALF +
Sbjct: 61 SSCISRCVDRYIEATGIVSRALFSS 82

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BLAST of CmaCh15G013340 vs. Swiss-Prot
Match: TIM13_DANRE (Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=timm13 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-12
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MDSFSSP-SSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          M+ F S  SSGSSS +       +Q+K Q+A A A+E L+ +  KCF KCI KPGS+L  
Sbjct: 1  MEGFGSDFSSGSSSGKMDTGTIMEQVKVQIAVANAQELLQRMTDKCFKKCIGKPGSTLDN 60

Query: 61 SESSCISRCMERYIEATGIVSRA 82
          SE  CI+ CM+RY++A   VSRA
Sbjct: 61 SEQKCIAMCMDRYMDAWNTVSRA 83

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BLAST of CmaCh15G013340 vs. Swiss-Prot
Match: TI13B_XENLA (Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis GN=timm13-b PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-12
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1  MDSFSSPSS---GSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLS 60
          MD F S  S    SS +       +Q+K Q+A A A+E L+ +  KCF KCI KPG SL 
Sbjct: 1  MDGFGSDFSVGGSSSGKVDTGAIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLD 60

Query: 61 GSESSCISRCMERYIEATGIVSRA 82
           SE  C++ CM+RY++A  IVSRA
Sbjct: 61 NSEQKCVAMCMDRYMDAWNIVSRA 84

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BLAST of CmaCh15G013340 vs. Swiss-Prot
Match: TIM13_HUMAN (Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens GN=TIMM13 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-12
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 4  FSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSESS 63
          F S   GS S +  P    +Q+K Q+A A A+E L+ +  KCF KCI KPG SL  SE  
Sbjct: 5  FGSDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQK 64

Query: 64 CISRCMERYIEATGIVSRA 82
          CI+ CM+RY++A   VSRA
Sbjct: 65 CIAMCMDRYMDAWNTVSRA 83

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BLAST of CmaCh15G013340 vs. TrEMBL
Match: A0A0A0KK66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALFKTPH 88
          SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

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BLAST of CmaCh15G013340 vs. TrEMBL
Match: M5WNY9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.1e-31
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MDSFSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFSSPSSGSS+ QF+P+ F+DQLK QLAQAYAEEFLETLR KCFDKCITKPGSSL GS
Sbjct: 1  MDSFSSPSSGSSATQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALF 84
          ESSCISRCM+RYIEATGI+S+ALF
Sbjct: 61 ESSCISRCMDRYIEATGIISKALF 84

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BLAST of CmaCh15G013340 vs. TrEMBL
Match: A0A058ZXS0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.0e-31
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MDSFSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFSSPSSGSSS QFS  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGS
Sbjct: 1  MDSFSSPSSGSSSSQFSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALF 84
          ESSCISRC+ERYIEATGI+SRA+F
Sbjct: 61 ESSCISRCVERYIEATGIISRAMF 84

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BLAST of CmaCh15G013340 vs. TrEMBL
Match: B9RYX8_RICCO (Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricinus communis GN=RCOM_1314610 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-30
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 1


Query: 1  MDSFSSPSS-GSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MD+FSSPSS G+ SQ S ++  DQ+KTQLAQAYA+EFLET+R KCFDKCITKPGSSLSGS
Sbjct: 1  MDTFSSPSSIGTGSQVSTSDLMDQVKTQLAQAYAQEFLETVRGKCFDKCITKPGSSLSGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALFKTPH 88
          ESSCISRC++RYIEATGIVSRALF  PH
Sbjct: 61 ESSCISRCVDRYIEATGIVSRALFNAPH 88

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BLAST of CmaCh15G013340 vs. TrEMBL
Match: D7TVU9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02990 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.7e-30
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MDSFS--SPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSG 60
          MDSFS  SPSSGSS Q S  +F DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSG
Sbjct: 1  MDSFSTHSPSSGSSPQMSTEDFMDQLKTQLAQAYAEEFLETVRGKCFEKCITKPGSSLSG 60

Query: 61 SESSCISRCMERYIEATGIVSRALFKTP 87
          SESSCISRC++RYIEATGI+S+ALF  P
Sbjct: 61 SESSCISRCVDRYIEATGIISKALFSAP 88

[Close]

BLAST of CmaCh15G013340 vs. TAIR10
Match: AT1G61570.1 (AT1G61570.1 translocase of the inner mitochondrial membrane 13)

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-28
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1  MDSFSSPS-SGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDS+SSP   GS S  SP    + +KTQLAQAYAEE +ETLR KCFDKC+TKPGSSL GS
Sbjct: 1  MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALF 84
          ESSCISRC+ERY+EAT I+SR+LF
Sbjct: 61 ESSCISRCVERYMEATAIISRSLF 84

[Close]

BLAST of CmaCh15G013340 vs. TAIR10
Match: AT5G50810.1 (AT5G50810.1 translocase inner membrane subunit 8)

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 24 LKTQLAQAYAEEFLETLRVKCFDKCITK-PGSSLSGSESSCISRCMERYIEATGIVSR 81
          L  +  +A   E +  +   C+DKCIT  PGS  S SESSC++ C +RY++ + I+ +
Sbjct: 15 LAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMK 72

[Close]

BLAST of CmaCh15G013340 vs. NCBI nr
Match: gi|449456285|ref|XP_004145880.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.0e-38
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPSSGSS QFS NEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALFKTPH 88
          SSCISRCMERYIEAT IVSRALFKTPH
Sbjct: 61 SSCISRCMERYIEATSIVSRALFKTPH 87

[Close]

BLAST of CmaCh15G013340 vs. NCBI nr
Match: gi|658063073|ref|XP_008367449.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [Malus domestica])

HSP 1 Score: 144.8 bits (364), Expect = 7.0e-32
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPS GSS QF+P+ F+DQLK QLAQAYAEEFLET+R KCFDKCITKPG+S+ GSE
Sbjct: 1  MDSFSSPSGGSSGQFNPDAFKDQLKNQLAQAYAEEFLETMRSKCFDKCITKPGTSIGGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALFKTPH 88
          SSCISRCM+RYIEATGI+S+ALF   H
Sbjct: 61 SSCISRCMDRYIEATGIISKALFSASH 87

[Close]

BLAST of CmaCh15G013340 vs. NCBI nr
Match: gi|657967569|ref|XP_008375466.1| (PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Malus domestica])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPS GSS QF+P+ F+DQLK QLAQAYAEEFLETLR KCFDKCITKPG+S+ GSE
Sbjct: 1  MDSFSSPSGGSSGQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGTSIGGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALF 84
          SSCISRCM+RYIEATGI+S+ALF
Sbjct: 61 SSCISRCMDRYIEATGIISKALF 83

[Close]

BLAST of CmaCh15G013340 vs. NCBI nr
Match: gi|694360737|ref|XP_009360219.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM13 [Pyrus x bretschneideri])

HSP 1 Score: 141.7 bits (356), Expect = 5.9e-31
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGSE 60
          MDSFSSPS GSS QF+P+ F+DQLK QLAQAYAEEFLETLR KCFDKCITKPG+S+ GSE
Sbjct: 1  MDSFSSPSLGSSGQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGTSIGGSE 60

Query: 61 SSCISRCMERYIEATGIVSRALF 84
          SSCISRCM+RYIEATGI+S+ALF
Sbjct: 61 SSCISRCMDRYIEATGIISKALF 83

[Close]

BLAST of CmaCh15G013340 vs. NCBI nr
Match: gi|595849839|ref|XP_007209804.1| (hypothetical protein PRUPE_ppa014043mg [Prunus persica])

HSP 1 Score: 141.7 bits (356), Expect = 5.9e-31
Identity = 72/84 (85.71%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MDSFSSPSSGSSS-QFSPNEFRDQLKTQLAQAYAEEFLETLRVKCFDKCITKPGSSLSGS 60
          MDSFSSPSSGSS+ QF+P+ F+DQLK QLAQAYAEEFLETLR KCFDKCITKPGSSL GS
Sbjct: 1  MDSFSSPSSGSSATQFNPDAFKDQLKNQLAQAYAEEFLETLRSKCFDKCITKPGSSLGGS 60

Query: 61 ESSCISRCMERYIEATGIVSRALF 84
          ESSCISRCM+RYIEATGI+S+ALF
Sbjct: 61 ESSCISRCMDRYIEATGIISKALF 84

The following BLAST results are available for this feature:

BLAST of CmaCh15G013340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM13_ARATH	1.5e-26	71.43	Mitochondrial import inner membrane translocase subunit TIM13 OS=Arabidopsis tha...	[more]
TIM13_ORYSJ	2.4e-24	72.94	Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa su...	[more]
TIM13_DANRE	3.6e-12	49.40	Mitochondrial import inner membrane translocase subunit Tim13 OS=Danio rerio GN=...	[more]
TI13B_XENLA	4.7e-12	46.43	Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevi...	[more]
TIM13_HUMAN	8.0e-12	48.10	Mitochondrial import inner membrane translocase subunit Tim13 OS=Homo sapiens GN...	[more]

BLAST of CmaCh15G013340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK66_CUCSA	3.5e-38	96.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146860 PE=3 SV=1	[more]
M5WNY9_PRUPE	4.1e-31	85.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014043mg PE=3 SV=1	[more]
A0A058ZXS0_EUCGR	7.0e-31	86.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00349 PE=3 SV=1	[more]
B9RYX8_RICCO	5.9e-30	79.55	Mitochondrial import inner membrane translocase subunit Tim13, putative OS=Ricin...	[more]
D7TVU9_VITVI	7.7e-30	80.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02990 PE=3 SV=...	[more]

BLAST of CmaCh15G013340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61570.1	8.4e-28	71.43	translocase of the inner mitochondrial membrane 13	[more]
AT5G50810.1	2.4e-06	37.93	translocase inner membrane subunit 8	[more]

BLAST of CmaCh15G013340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456285\|ref\|XP_004145880.1\|	5.0e-38	96.55	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Cucumi...	[more]
gi\|658063073\|ref\|XP_008367449.1\|	7.0e-32	79.31	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [M...	[more]
gi\|657967569\|ref\|XP_008375466.1\|	3.5e-31	83.13	PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Malus ...	[more]
gi\|694360737\|ref\|XP_009360219.1\|	5.9e-31	83.13	PREDICTED: mitochondrial import inner membrane translocase subunit TIM13 [Pyrus ...	[more]
gi\|595849839\|ref\|XP_007209804.1\|	5.9e-31	85.71	hypothetical protein PRUPE_ppa014043mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004217	Tim10-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0001510	RNA methylation
biological_process	GO:0015031	protein transport
biological_process	GO:0072321	chaperone-mediated protein transport
cellular_component	GO:0005758	mitochondrial intermembrane space
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G013340.1	CmaCh15G013340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10/DDP family zinc finger	GENE3D	G3DSA:1.10.287.810		coord: 25..83 score: 1.0
IPR004217	Tim10/DDP family zinc finger	PFAM	PF02953	zf-Tim10_DDP	coord: 23..82 score: 3.7
IPR004217	Tim10/DDP family zinc finger	unknown	SSF144122	Tim10-like	coord: 34..84 score: 4.19
None	No IPR available	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 1..84 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G013340	Cucsa.193350	Cucumber (Gy14) v1	cgycmaB0561
CmaCh15G013340	Csa5G146860	Cucumber (Chinese Long) v2	cmacuB298
CmaCh15G013340	MELO3C005802	Melon (DHL92) v3.5.1	cmameB250
CmaCh15G013340	ClCG01G001340	Watermelon (Charleston Gray)	cmawcgB259
CmaCh15G013340	CSPI05G04090	Wild cucumber (PI 183967)	cmacpiB303
CmaCh15G013340	CmoCh02G009610	Cucurbita moschata (Rifu)	cmacmoB295
CmaCh15G013340	CmoCh15G013960	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G013340	Lsi09G001210	Bottle gourd (USVL1VR-Ls)	cmalsiB267
CmaCh15G013340	Cp4.1LG00g00840	Cucurbita pepo (Zucchini)	cmacpeB299
CmaCh15G013340	Cp4.1LG05g07510	Cucurbita pepo (Zucchini)	cmacpeB331
CmaCh15G013340	MELO3C005802.2	Melon (DHL92) v3.6.1	cmamedB284
CmaCh15G013340	CsaV3_5G001470	Cucumber (Chinese Long) v3	cmacucB0352
CmaCh15G013340	Bhi12G000047	Wax gourd	cmawgoB0374
CmaCh15G013340	CsGy5G001340	Cucumber (Gy14) v2	cgybcmaB608
CmaCh15G013340	Carg21323	Silver-seed gourd	carcmaB0505

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G013340	CmaCh02G009530	Cucurbita maxima (Rimu)	cmacmaB309

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G013340	Watermelon (97103) v2	cmawmbB288
CmaCh15G013340	Watermelon (97103) v1	cmawmB277
CmaCh15G013340	Silver-seed gourd	carcmaB0993