Lsi08G006160 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G006160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr08 : 14489806 .. 14490630 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAGCAGAAACAAAGGAGGCAGTTGAAGACAAAAGTTGAAAACTTGTTAAAACTTATATAAAGAGGCAGTCCAAGTTGTTAGAGTTGAAAAACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACATCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAATGATTGTGAATCCTAGTTAGTTTTCTGTTTTGTGTTAATGTTAAAGTTTTAACTCATGGAATTCTCTGTCTGTTTGTCTTTCTCTTGTTTTGTTTTTGAGACAGAATGAAGCCTAAGTTGAGAAGCTAAATCTTAAATGAATCATCAAGATGAAGAAGAAGAAGAAACAAATGTTCAAAGGAATGTCAAAGCCAAAGCATTTCTTCTAGTTTTCTTTTTTATACTAAGAACAAAGATTCATAGCTATAGAAATACAGTAGAAAACTGACTGTTACATACAAAGTTTGATTACAAAGTTGTTTCTTTAAAGACCTTCTTGTGTATGTGTAGATTATCAAATGTTAAATCAACTTCTACAATTTTGATCTGTTTCGAGTCTAAGCCGAAACTTATTCG

mRNA sequence

ATTTTAGCAGAAACAAAGGAGGCAGTTGAAGACAAAAGTTGAAAACTTGTTAAAACTTATATAAAGAGGCAGTCCAAGTTGTTAGAGTTGAAAAACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACATCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGAATGAAGCCTAAGTTGAGAAGCTAAATCTTAAATGAATCATCAAGATGAAGAAGAAGAAGAAACAAATGTTCAAAGGAATGTCAAAGCCAAAGCATTTCTTCTAGTTTTCTTTTTTATACTAAGAACAAAGATTCATAGCTATAGAAATACAGTAGAAAACTGACTGTTACATACAAAGTTTGATTACAAAGTTGTTTCTTTAAAGACCTTCTTGTGTATGTGTAGATTATCAAATGTTAAATCAACTTCTACAATTTTGATCTGTTTCGAGTCTAAGCCGAAACTTATTCG

Coding sequence (CDS)

ATGAAACCTTTGATCTACAAATCATTGTTGCTTCCATTTCTCTACACTTTTCTACTGATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATCCTCCTCCCCCTCCCGGGTTCTCCTGTTGCTTCTACGTCATTACCGTTACCATTACCGTCATCATCGTTGTATCAAGTTGATCTTCTTCATCTTCCTCGCACAACTCGAAAGCTCGGCGAAACGACATCATCTACTACCACCAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGAATGAAGCCTAAGTTGAGAAGCTAA

Protein sequence

MKPLIYKSLLLPFLYTFLLMFSLHLHTPTQAARILLPLPGSPVASTSLPLPLPSSSLYQVDLLHLPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNRMKPKLRS

Homology

[Close]

BLAST of Lsi08G006160 vs. NCBI nr
Match: gi|778710542|ref|XP_011656590.1| (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MKPLIYKSLLLPFLYTFLLM-FSLHLHTPTQAARILLPLPGSPVASTSLPLPLP--SSSL 60
           MKPLI KSLL+P LYTFLL+ FS HLHTPTQAAR+LLP PGS VASTSLPLPL   SSS 
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  YQVDLLH-LPRTTRKLGETTSSTTTSLRRIPRSGPNPTQNRMKPKLRS 105
           YQVDLLH LP   RKLGET+SST+TSLRRIPRSGPNPTQNRMKPKLRS
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 148

The following BLAST results are available for this feature:

BLAST of Lsi08G006160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G006160 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi08G006160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G006160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710542\|ref\|XP_011656590.1\|	2.6e-33	82.41	PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006160.1	Lsi08G006160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G006160	CmaCh04G024930	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G006160	CmaCh15G005490	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G006160	CmoCh15G005550	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G006160	CmoCh04G026080	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G006160	Cla013663	Watermelon (97103) v1	lsiwmB475
Lsi08G006160	MELO3C019930	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G006160	ClCG08G008600	Watermelon (Charleston Gray)	lsiwcgB443
Lsi08G006160	MELO3C019930.2	Melon (DHL92) v3.6.1	lsimedB491
Lsi08G006160	Cla97C08G151410	Watermelon (97103) v2	lsiwmbB448
Lsi08G006160	Bhi04G001285	Wax gourd	lsiwgoB593
Lsi08G006160	CsGy6G004250	Cucumber (Gy14) v2	cgyblsiB444
Lsi08G006160	Carg01650	Silver-seed gourd	carlsiB758
Lsi08G006160	Carg15835	Silver-seed gourd	carlsiB059
Lsi08G006160	CsaV3_6G004590	Cucumber (Chinese Long) v3	cuclsiB509

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G006160	Silver-seed gourd	carlsiB769
Lsi08G006160	Watermelon (97103) v2	lsiwmbB439
Lsi08G006160	Wax gourd	lsiwgoB618
Lsi08G006160	Bottle gourd (USVL1VR-Ls)	lsilsiB152
Lsi08G006160	Cucumber (Gy14) v1	cgylsiB588
Lsi08G006160	Cucurbita pepo (Zucchini)	cpelsiB158
Lsi08G006160	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G006160	Wild cucumber (PI 183967)	cpilsiB487
Lsi08G006160	Cucumber (Chinese Long) v2	culsiB478
Lsi08G006160	Cucumber (Gy14) v2	cgyblsiB354