Bhi04G001285 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G001285
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr4 : 40738691 .. 40739103 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTATCTACACTTTTCTACTTATGTTTACTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTCCCCGAGTTCTCGTTTTGCTTCTAAGTCATTACCGTTACCGTTATCGTCATCGTCATCATATCAAGTTGATCTTCTTCTTCATCTTCCTCCCACTGCTCGGAAGCTCGGCGAAACGACGTCGTCTACTACCACCAGCCTTCGCCGAATACCTCGTAGCGGCCCAAACCCCACACAGAATAGGTAATGATTCTGAATCCTACGTAGTTTTTTGTTTTTTGTTAAAGTTTTAACTCATAGAATTCTCTATCTGTCTGTTGTTTTTGTTTTTGAGACAGAATGAAGCCTAAGTTCAGAAGCTAA

mRNA sequence

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTATCTACACTTTTCTACTTATGTTTACTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTCCCCGAGTTCTCGTTTTGCTTCTAAGTCATTACCGTTACCGTTATCGTCATCGTCATCATATCAAGTTGATCTTCTTCTTCATCTTCCTCCCACTGCTCGGAAGCTCGGCGAAACGACGTCGTCTACTACCACCAGCCTTCGCCGAATACCTCGTAGCGGCCCAAACCCCACACAGAATAGAATGAAGCCTAAGTTCAGAAGCTAA

Coding sequence (CDS)

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTATCTACACTTTTCTACTTATGTTTACTCTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTCCCCGAGTTCTCGTTTTGCTTCTAAGTCATTACCGTTACCGTTATCGTCATCGTCATCATATCAAGTTGATCTTCTTCTTCATCTTCCTCCCACTGCTCGGAAGCTCGGCGAAACGACGTCGTCTACTACCACCAGCCTTCGCCGAATACCTCGTAGCGGCCCAAACCCCACACAGAATAGAATGAAGCCTAAGTTCAGAAGCTAA

Protein sequence

MKPLIYKSLLVPVIYTFLLMFTLHLHTPTQAARMLLPSPSSRFASKSLPLPLSSSSSYQVDLLLHLPPTARKLGETTSSTTTSLRRIPRSGPNPTQNRMKPKFRS

Homology

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BLAST of Bhi04G001285 vs. NCBI nr
Match: XP_011656590.1 (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 79/108 (73.15%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MKPLIYKSLLVPVIYTFL---LMFTLHLHTPTQAARMLXXXXXXXXXXXXXXXXXXXXXX 60
           MKPLI KSLLVP++YTFL                    XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 41  MKPLISKSLLVPILYTFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 100

Query: 61  YQVDLLLHLPPTARKLGETTSSTTTSLRRIPRSGPNPTQNRMKPKFRS 106
            QVDLL HLPP ARKLGET+SST+TSLRRIPRSGPNPTQNRMKPK RS
Sbjct: 101 XQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 148

The following BLAST results are available for this feature:

BLAST of Bhi04G001285 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G001285 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G001285 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi04G001285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656590.1	1.4e-14	73.15	PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009812	flavonoid metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:1990135	flavonoid sulfotransferase activity
molecular_function	GO:0008146	sulfotransferase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M001285	Bhi04M001285	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G001285	MELO3C019930	Melon (DHL92) v3.5.1	mewgoB326
Bhi04G001285	ClCG08G008600	Watermelon (Charleston Gray)	wcgwgoB628
Bhi04G001285	CmaCh04G024930	Cucurbita maxima (Rimu)	cmawgoB0861
Bhi04G001285	CmaCh15G005490	Cucurbita maxima (Rimu)	cmawgoB0398
Bhi04G001285	CmoCh04G026080	Cucurbita moschata (Rifu)	cmowgoB0858
Bhi04G001285	CmoCh15G005550	Cucurbita moschata (Rifu)	cmowgoB0393
Bhi04G001285	Lsi08G006160	Bottle gourd (USVL1VR-Ls)	lsiwgoB593
Bhi04G001285	CsGy6G004250	Cucumber (Gy14) v2	cgybwgoB560
Bhi04G001285	MELO3C019930.2	Melon (DHL92) v3.6.1	medwgoB325
Bhi04G001285	Carg15835	Silver-seed gourd	carwgoB0076
Bhi04G001285	Carg01650	Silver-seed gourd	carwgoB0965
Bhi04G001285	CsaV3_6G004590	Cucumber (Chinese Long) v3	cucwgoB607
Bhi04G001285	Cla013663	Watermelon (97103) v1	wgowmB313
Bhi04G001285	Cla97C08G151410	Watermelon (97103) v2	wgowmbB329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G001285	Cucumber (Chinese Long) v2	cuwgoB588
Bhi04G001285	Cucumber (Gy14) v1	cgywgoB731
Bhi04G001285	Cucurbita pepo (Zucchini)	cpewgoB0248
Bhi04G001285	Cucurbita pepo (Zucchini)	cpewgoB0526
Bhi04G001285	Wild cucumber (PI 183967)	cpiwgoB593