CmaCh15G005490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G005490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 2562772 .. 2563929 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTACTTTGCAGATCCAACCCTTCCCCTGAAATCACTGTCTTGATAGTGTGCATACGAGTCTGGTTTTGTCAAAGCTATCTGATAAAAGGGTATGCTTTGAAATTTCCTTTAATACAAGGGTATGGTTTGCAAAATATACAGAATACAAGGGTGTGGGCTGAAACATAGGAGGCAGTTGAAGACAAAAGTTGAAAACTTGTTAAGTTATATAAGGGAGGCAGTCCAAGTTGTTGGAGTTGCAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAATATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTGCTCTTTTCTACTGATGTGTTTTCTTCCCACTCCAACTCAAGCTGCAAGACTTCTCCTCCCGGTTCCTCGGGTTGCTTCTACATCGTCATCGCTGTATCGAGTTGATGTTCTTCATCTTCTTCCTCTCACAGCTCGGAAGCTCCATGAAACAGCATCATCTACTTCCTCCAACCTTCGCCGAATACCTCGTAGCGGCCCGAATCCAACACAGAACAGGTAATGATTCTGAATCCTAGTTCGGTTTCTGTTTTGTGTTAATGTTCGAGTTTTGACTCATAGATTGTTTTGTTTTGTTTTGTTTTGTTTTGGGGATAGAATGAAGCCTGAGTTGAGAAGCTAAATCTTAGAGGGATCATCAAGATGAACAAGAAACAGAGATGTTCAAAGATTCTCAAAACCAACCATTACTTTAGTTTTCTTTTTTCTTTTATATACTAAGAAACAAGATTCATAGCTATAGAAATACAGTAGTACTGACTTATATACATCAGAACTTCTTGTGTGTATGTGTAGAATCTCAATGTTAATCAAATTTTACCACTTTGATCTGTTTCTCGATATCGAGTTTGTCGATCCGAAACTTATACAAAGATGATGATCCGTTGTATCATTTGAGCTCTGCGACCCCAACTCGATCCATGTTCGATCAATCAATTACTTCAAATGTTCTATCAGATGAGAGGCTGATGAATTCCAACAAGAAGGTTGATGAGTTATTATCCACAAGGATGAGAGCAAGTTTGATGTAGGCCATTGTTAGTGACCATTCAACAAGAACAGGAAAGAAAAAAGGTTCATAAATAAACAAAGGAAATGAGAGAGAGAGAGA

mRNA sequence

TTTTTTACTTTGCAGATCCAACCCTTCCCCTGAAATCACTGTCTTGATAGTGTGCATACGAGTCTGGTTTTGTCAAAGCTATCTGATAAAAGGGTATGCTTTGAAATTTCCTTTAATACAAGGGTATGGTTTGCAAAATATACAGAATACAAGGGTGTGGGCTGAAACATAGGAGGCAGTTGAAGACAAAAGTTGAAAACTTGTTAAGTTATATAAGGGAGGCAGTCCAAGTTGTTGGAGTTGCAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAATATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTGCTCTTTTCTACTGATGTGTTTTCTTCCCACTCCAACTCAAGCTGCAAGACTTCTCCTCCCGGTTCCTCGGGTTGCTTCTACATCGTCATCGCTGTATCGAGTTGATGTTCTTCATCTTCTTCCTCTCACAGCTCGGAAGCTCCATGAAACAGCATCATCTACTTCCTCCAACCTTCGCCGAATACCTCGTAGCGGCCCGAATCCAACACAGAACAGAATGAAGCCTGAGTTGAGAAGCTAAATCTTAGAGGGATCATCAAGATGAACAAGAAACAGAGATGTTCAAAGATTCTCAAAACCAACCATTACTTTAGTTTTCTTTTTTCTTTTATATACTAAGAAACAAGATTCATAGCTATAGAAATACAGTAGTACTGACTTATATACATCAGAACTTCTTGTGTGTATGTGTAGAATCTCAATGTTAATCAAATTTTACCACTTTGATCTGTTTCTCGATATCGAGTTTGTCGATCCGAAACTTATACAAAGATGATGATCCGTTGTATCATTTGAGCTCTGCGACCCCAACTCGATCCATGTTCGATCAATCAATTACTTCAAATGTTCTATCAGATGAGAGGCTGATGAATTCCAACAAGAAGGTTGATGAGTTATTATCCACAAGGATGAGAGCAAGTTTGATGTAGGCCATTGTTAGTGACCATTCAACAAGAACAGGAAAGAAAAAAGGTTCATAAATAAACAAAGGAAATGAGAGAGAGAGAGA

Coding sequence (CDS)

ATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTGCTCTTTTCTACTGATGTGTTTTCTTCCCACTCCAACTCAAGCTGCAAGACTTCTCCTCCCGGTTCCTCGGGTTGCTTCTACATCGTCATCGCTGTATCGAGTTGATGTTCTTCATCTTCTTCCTCTCACAGCTCGGAAGCTCCATGAAACAGCATCATCTACTTCCTCCAACCTTCGCCGAATACCTCGTAGCGGCCCGAATCCAACACAGAACAGAATGAAGCCTGAGTTGAGAAGCTAA

Protein sequence

MKPLICKSLVPILCSFLLMCFLPTPTQAARLLLPVPRVASTSSSLYRVDVLHLLPLTARKLHETASSTSSNLRRIPRSGPNPTQNRMKPELRS
Homology
[Close]
BLAST of CmaCh15G005490 vs. NCBI nr
Match: gi|778710542|ref|XP_011656590.1| (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 73/108 (67.59%), Postives = 82/108 (75.93%), Query Frame = 1 

Query: 1   MKPLICKSL-VPILCSFLLMCF---LPTPTQAARLLLPVP--RVASTS---------SSL 60
           MKPLI KSL VPIL +FLL+ F   L TPTQAAR+LLP P   VASTS         SS 
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  YRVDVLHLLPLTARKLHETASSTSSNLRRIPRSGPNPTQNRMKPELRS 94
           Y+VD+LH LP  ARKL ET+SSTS++LRRIPRSGPNPTQNRMKP+LRS
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 148

The following BLAST results are available for this feature:
BLAST of CmaCh15G005490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005490 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710542|ref|XP_011656590.1|2.7e-2167.59PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G005490.1CmaCh15G005490.1mRNA