CmoCh04G026080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G026080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 19013821 .. 19014763 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATCGACTGAATGTGTTTTAACCAATTGAGTTATGTTTAGATTGGCATGAGTCGATTTTATCAAAGTTAACCGATAAATGGGTATATTTTCATGTTCACAAGGGCATTTCGAACTTTTTTTTAATACAAGGGTCTGATTCGTAAAATACACTACGTACGGGAGTGGTACGATCTGCGAAACATACAAAATACAGGGGTGTAACTTGTAAGTATTCTGTTTAGTGAAACAAAGAAAGGCAGTTGAAGACAAAATTAGAAAAATTGTTGAATTATATAAGCAAGCAGACCACTAGTTGTTGGAGTTGCAAGACAAATAAGACATTGATTCTCTCAGAACTCACAAAAAAACATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTCTCGAGTTGGTCATCTTCATCTACCTCTCACAGTTCGGAAGCTCCCCGAAACAGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAGTAATGAACTCCTAATCCTAGTTTAGTGTTCTGTGTTTGTGTTAATGTTAGACTCATAGATTCTTTGTTTCATCTCTTGTTTTGTTCTTGGAACAGATTGAAGCCAACAAAGTTGAGAAGCTAAATCTCAACGGAATCATCGAGACGAAGAACACAAACCCGACGTTGCAAGGAATCTCGAAGCCAACCATGGTAGCTTCCTTTTTATACTGAGAAAAAAAGATTCATAGCTATAGAAATACAGTACTACTGACTGTTACTACATACAATGATCTGATTAGAAAGTAGCTTCTTGTGTATGTGTATGTGTAGATCTTCAATGTTAATCAAGTTTTGATATATTTCTTGAAGCCGAG

mRNA sequence

TCCATCGACTGAATGTGTTTTAACCAATTGAGTTATGTTTAGATTGGCATGAGTCGATTTTATCAAAGTTAACCGATAAATGGGTATATTTTCATGTTCACAAGGGCATTTCGAACTTTTTTTTAATACAAGGGTCTGATTCGTAAAATACACTACGTACGGGAGTGGTACGATCTGCGAAACATACAAAATACAGGGGTGTAACTTGTAAGTATTCTGTTTAGTGAAACAAAGAAAGGCAGTTGAAGACAAAATTAGAAAAATTGTTGAATTATATAAGCAAGCAGACCACTAGTTGTTGGAGTTGCAAGACAAATAAGACATTGATTCTCTCAGAACTCACAAAAAAACATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTCTCGAGTTGGTCATCTTCATCTACCTCTCACAGTTCGGAAGCTCCCCGAAACAGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAATTGAAGCCAACAAAGTTGAGAAGCTAAATCTCAACGGAATCATCGAGACGAAGAACACAAACCCGACGTTGCAAGGAATCTCGAAGCCAACCATGGTAGCTTCCTTTTTATACTGAGAAAAAAAGATTCATAGCTATAGAAATACAGTACTACTGACTGTTACTACATACAATGATCTGATTAGAAAGTAGCTTCTTGTGTATGTGTATGTGTAGATCTTCAATGTTAATCAAGTTTTGATATATTTCTTGAAGCCGAG

Coding sequence (CDS)

ATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTCTCGAGTTGGTCATCTTCATCTACCTCTCACAGTTCGGAAGCTCCCCGAAACAGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAATTGAAGCCAACAAAGTTGAGAAGCTAA
Homology
[Close]
BLAST of CmoCh04G026080 vs. NCBI nr
Match: gi|778710542|ref|XP_011656590.1| (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 1 

Query: 1   MKPLICKSLL-PILYTFLLM-FPLHLHTAALAARTLLP-------------------SSS 60
           MKPLI KSLL PILYTFLL+ F  HLHT   AAR LLP                   SSS
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  SRVGHLH-LPLTVRKLPETASSTSSSLRQIPKSGPNPTQNKLKPTKLRS 88
            +V  LH LP   RKL ET+SSTS+SLR+IP+SGPNPTQN++KP KLRS
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKP-KLRS 148

The following BLAST results are available for this feature:
BLAST of CmoCh04G026080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026080 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710542|ref|XP_011656590.1|2.9e-1458.72PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026080.1CmoCh04G026080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G026080CmaCh15G005490Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G026080CmaCh04G024930Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G026080Cla013663Watermelon (97103) v1cmowmB663
CmoCh04G026080MELO3C019930Melon (DHL92) v3.5.1cmomeB667
CmoCh04G026080ClCG08G008600Watermelon (Charleston Gray)cmowcgB682
CmoCh04G026080Lsi08G006160Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G026080CsaV3_6G004590Cucumber (Chinese Long) v3cmocucB0898
CmoCh04G026080Cla97C08G151410Watermelon (97103) v2cmowmbB762
CmoCh04G026080Bhi04G001285Wax gourdcmowgoB0858
CmoCh04G026080CsGy6G004250Cucumber (Gy14) v2cgybcmoB815
CmoCh04G026080Carg15835Silver-seed gourdcarcmoB0094
CmoCh04G026080Carg01650Silver-seed gourdcarcmoB1121
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G026080CmoCh15G005550Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G026080Watermelon (97103) v2cmowmbB741
CmoCh04G026080Wax gourdcmowgoB0894
CmoCh04G026080Cucurbita moschata (Rifu)cmocmoB345
CmoCh04G026080Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G026080Cucumber (Gy14) v1cgycmoB1004
CmoCh04G026080Wild cucumber (PI 183967)cmocpiB769
CmoCh04G026080Cucumber (Chinese Long) v2cmocuB760
CmoCh04G026080Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G026080Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G026080Bottle gourd (USVL1VR-Ls)cmolsiB676
CmoCh04G026080Cucumber (Gy14) v2cgybcmoB635
CmoCh04G026080Melon (DHL92) v3.6.1cmomedB754
CmoCh04G026080Silver-seed gourdcarcmoB1136