CmaCh04G024930 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G024930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 17081305 .. 17082593 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACTTTTGACCTCTTGATCGAATGAATGTATCTTAACTAGTTGAGTTATGTTTAAATTGACATATGAGTCGATTTGAGCTAAGTTGATAAAAGGGTATATTTTCAAGTTCACAAGGGCGTTTCAATATTTTTTTTTTTAATATAAGGGTCTGATTTGTAAAATACTCGAGTTTTTAGATTAATTGCACATCACACCCTTATTATTTATTTTGCAAATCTACCCTTGTACACCTTAAGTTTACAGCTTTCAGTCTTTGTCTTTTGTTCTAATGTACTATTTCATATTGTATAATGGAGGTTGAGAAATTTAAACTTTTGACCTCTTGATCGACGGAATGTGTTTTAACCAGTTGAGTTATGCTTAGATTGTCATGTGAGTCGGTTTTATCAAAGCTAACCGATAAAGGGGTATATTTTCATGTTCACAAGGGCGTTTTGAACTTTTTTTTAATACTAGGGTCTGATTCGTAAAATACACTACGTATGGGAGCGGTACGATCTGCGAAATATACAAAATACAGGGGTGTAACTTGTAAGTATTCTGTTTAGTGAACCAAAGAAAGGCAGTTGAAGACAAAATTAGAAAACTTGTTGAATTATATAAGCAGGGCAGACCACTAGTTGTTGGAGTTGCAAGACAAATAAGACATTGATTCTCTCAGAACTCACAAAAAAACATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTTTCGAGTTGGTCATCTTCATCTACCTCTCACAGCTCGGAAGCTCCCCGAAACGGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAGTAATGAACTCTTAATCCTAGTTTAGTGTTCTGTGTTTGTGTTGATGTTAGACTCATAGATTCTTTGTTTCATCTCTTGTTTTGTTCTTGAAACAGATTGAAGCCAACAAAGTTGAGAAGCTAAATCTCAACGGAATCATCGAGACGAAGAACACGAACCCGATGTTGCAAGAAATCTCGAAGCCAGCCATGGTAGCTTCCTTTTTATACTGAGAAAAAAGATTCATAGCTATAGAAATACAGTACTGACTGTTACTACATACAATGATCTGATTAGAATGTAGCTTCTTGTGTATGTGTATGTGTAGATCTTCAATGTCAATCAAGTTTTGATCTATTTCTTGAAGCCGAGTCGAGATTTTCGTGTTAAATCC

mRNA sequence

TAAACTTTTGACCTCTTGATCGAATGAATGTATCTTAACTAGTTGAGTTATGTTTAAATTGACATATGAGTCGATTTGAGCTAAGTTGATAAAAGGGTATATTTTCAAGTTCACAAGGGCGTTTCAATATTTTTTTTTTTAATATAAGGGTCTGATTTGTAAAATACTCGAGTTTTTAGATTAATTGCACATCACACCCTTATTATTTATTTTGCAAATCTACCCTTGTACACCTTAAGTTTACAGCTTTCAGTCTTTGTCTTTTGTTCTAATGTACTATTTCATATTGTATAATGGAGGTTGAGAAATTTAAACTTTTGACCTCTTGATCGACGGAATGTGTTTTAACCAGTTGAGTTATGCTTAGATTGTCATGTGAGTCGGTTTTATCAAAGCTAACCGATAAAGGGGTATATTTTCATGTTCACAAGGGCGTTTTGAACTTTTTTTTAATACTAGGGTCTGATTCGTAAAATACACTACGTATGGGAGCGGTACGATCTGCGAAATATACAAAATACAGGGGTGTAACTTGTAAGTATTCTGTTTAGTGAACCAAAGAAAGGCAGTTGAAGACAAAATTAGAAAACTTGTTGAATTATATAAGCAGGGCAGACCACTAGTTGTTGGAGTTGCAAGACAAATAAGACATTGATTCTCTCAGAACTCACAAAAAAACATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTTTCGAGTTGGTCATCTTCATCTACCTCTCACAGCTCGGAAGCTCCCCGAAACGGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAATTGAAGCCAACAAAGTTGAGAAGCTAAATCTCAACGGAATCATCGAGACGAAGAACACGAACCCGATGTTGCAAGAAATCTCGAAGCCAGCCATGGTAGCTTCCTTTTTATACTGAGAAAAAAGATTCATAGCTATAGAAATACAGTACTGACTGTTACTACATACAATGATCTGATTAGAATGTAGCTTCTTGTGTATGTGTATGTGTAGATCTTCAATGTCAATCAAGTTTTGATCTATTTCTTGAAGCCGAGTCGAGATTTTCGTGTTAAATCC

Coding sequence (CDS)

ATGAAACCTTTGATCTGCAAATCATTGCTTCCAATTCTCTACACTTTTCTACTGATGTTTCCTCTCCATCTTCACACTGCTGCTCTGGCTGCAAGAACGCTCCTCCCATCGTCCTCGTTTCGAGTTGGTCATCTTCATCTACCTCTCACAGCTCGGAAGCTCCCCGAAACGGCATCGTCGACTTCCTCGAGCCTTCGCCAAATTCCTAAAAGCGGCCCGAATCCTACACAGAACAAATTGAAGCCAACAAAGTTGAGAAGCTAA

Protein sequence

MKPLICKSLLPILYTFLLMFPLHLHTAALAARTLLPSSSFRVGHLHLPLTARKLPETASSTSSSLRQIPKSGPNPTQNKLKPTKLRS
Homology
[Close]
BLAST of CmaCh04G024930 vs. NCBI nr
Match: gi|778710542|ref|XP_011656590.1| (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 65/109 (59.63%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 1   MKPLICKSLL-PILYTFLLM-FPLHLHTAALAARTLLP-------------------SSS 60
           MKPLI KSLL PILYTFLL+ F  HLHT   AAR LLP                   SSS
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  FRVGHLH-LPLTARKLPETASSTSSSLRQIPKSGPNPTQNKLKPTKLRS 88
           ++V  LH LP  ARKL ET+SSTS+SLR+IP+SGPNPTQN++KP KLRS
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKP-KLRS 148

The following BLAST results are available for this feature:
BLAST of CmaCh04G024930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024930 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710542|ref|XP_011656590.1|2.7e-1559.63PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G024930.1CmaCh04G024930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G024930Cla013663Watermelon (97103) v1cmawmB668
CmaCh04G024930MELO3C019930Melon (DHL92) v3.5.1cmameB675
CmaCh04G024930ClCG08G008600Watermelon (Charleston Gray)cmawcgB680
CmaCh04G024930CmoCh15G005550Cucurbita moschata (Rifu)cmacmoB693
CmaCh04G024930CmoCh04G026080Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G024930Lsi08G006160Bottle gourd (USVL1VR-Ls)cmalsiB703
CmaCh04G024930MELO3C019930.2Melon (DHL92) v3.6.1cmamedB757
CmaCh04G024930CsaV3_6G004590Cucumber (Chinese Long) v3cmacucB0907
CmaCh04G024930Cla97C08G151410Watermelon (97103) v2cmawmbB788
CmaCh04G024930Bhi04G001285Wax gourdcmawgoB0861
CmaCh04G024930CsGy6G004250Cucumber (Gy14) v2cgybcmaB835
CmaCh04G024930Carg01650Silver-seed gourdcarcmaB1150
CmaCh04G024930Carg15835Silver-seed gourdcarcmaB0088
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G024930CmaCh15G005490Cucurbita maxima (Rimu)cmacmaB325
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G024930Watermelon (97103) v2cmawmbB769
CmaCh04G024930Wax gourdcmawgoB0895
CmaCh04G024930Cucurbita maxima (Rimu)cmacmaB536
CmaCh04G024930Cucumber (Gy14) v1cgycmaB1004
CmaCh04G024930Cucurbita moschata (Rifu)cmacmoB739
CmaCh04G024930Wild cucumber (PI 183967)cmacpiB778
CmaCh04G024930Cucumber (Chinese Long) v2cmacuB767
CmaCh04G024930Cucurbita pepo (Zucchini)cmacpeB705
CmaCh04G024930Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G024930Bottle gourd (USVL1VR-Ls)cmalsiB684
CmaCh04G024930Silver-seed gourdcarcmaB1168