CsGy6G004250 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G004250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr6 : 3938817 .. 3939548 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGTTGAAAATTTGTTAAAAACTTATATAAAGAGGCAGTCCAAGTTGTTAGAGTTGAAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTCCAAATCATTGTTGGTTCCAATTCTCTACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTTCCCGGGTTCTCATGTTGCTTCTATGTCGTTACCGTTACCGTTATCATTGTCGTCGTCGTCGTCATATCAAGTTGATCTTCTTCATCATCTTCCTCCTGCTGCTAGGAAGCTCGGTGAAACCTCATCCTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCAAATCCCACACAGAACAGGTAATGATTTTGAATCCTAGTTGGTTTTTTGTTTTGTTAATGCTAAAGTTCTAACTCATGGAATTTTCTCCATCTGTCTCTTATTTTGGTTTTGAAAACAGAATGAAGCCTAAGTTGAGAAGCTAAATCTTAAAGGGATCAAAGAAACAGATGTTCAAAGGACTCTCAAAGCCAATCATTATTCTACTTTTGTTTTTTATACTAAGGAAAAAAAATTCATAGCAATAGAAATACATTAGAAAACTGACTGTTACATACATGGCTTGATTAGAACTTCTTGTGTATGTGTAGATTTCCCAATGTTAATAAAACTTCTACAATTTTGA

mRNA sequence

CAAAAGTTGAAAATTTGTTAAAAACTTATATAAAGAGGCAGTCCAAGTTGTTAGAGTTGAAAGACAAACAAGACATTGATTCTCTCAGAGCTTCACAAAAAAACATGAAACCTTTGATCTCCAAATCATTGTTGGTTCCAATTCTCTACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTTCCCGGGTTCTCATGTTGCTTCTATGTCGTTACCGTTACCGTTATCATTGTCGTCGTCGTCGTCATATCAAGTTGATCTTCTTCATCATCTTCCTCCTGCTGCTAGGAAGCTCGGTGAAACCTCATCCTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCAAATCCCACACAGAACAGAATGAAGCCTAAGTTGAGAAGCTAAATCTTAAAGGGATCAAAGAAACAGATGTTCAAAGGACTCTCAAAGCCAATCATTATTCTACTTTTGTTTTTTATACTAAGGAAAAAAAATTCATAGCAATAGAAATACATTAGAAAACTGACTGTTACATACATGGCTTGATTAGAACTTCTTGTGTATGTGTAGATTTCCCAATGTTAATAAAACTTCTACAATTTTGA

Coding sequence (CDS)

ATGAAACCTTTGATCTCCAAATCATTGTTGGTTCCAATTCTCTACACTTTTCTACTTCTGATCTTTTCTTTCCATCTTCACACTCCTACTCAAGCTGCAAGAATGCTCCTCCCTTTCCCGGGTTCTCATGTTGCTTCTATGTCGTTACCGTTACCGTTATCATTGTCGTCGTCGTCGTCATATCAAGTTGATCTTCTTCATCATCTTCCTCCTGCTGCTAGGAAGCTCGGTGAAACCTCATCCTCTACTTCCACAAGCCTTCGCCGAATACCTCGTAGTGGCCCAAATCCCACACAGAACAGAATGAAGCCTAAGTTGAGAAGCTAA

Protein sequence

MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASMSLPLPLSLSSSSSYQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS

Homology

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BLAST of CsGy6G004250 vs. NCBI nr
Match: XP_011656590.1 (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MKPLISKSLLVPILYTFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKPLISKSLLVPILYTFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 41  MKPLISKSLLVPILYTFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 100

Query: 61  XQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 109
           XQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS
Sbjct: 101 XQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNRMKPKLRS 148

The following BLAST results are available for this feature:

BLAST of CsGy6G004250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656590.1	1.3e-20	100.00	PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus]	[more]

BLAST of CsGy6G004250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy6G004250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G004250 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G004250.1	CsGy6G004250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G004250	Cla013663	Watermelon (97103) v1	cgybwmB428
CsGy6G004250	MELO3C019930	Melon (DHL92) v3.5.1	cgybmeB415
CsGy6G004250	ClCG08G008600	Watermelon (Charleston Gray)	cgybwcgB455
CsGy6G004250	CmaCh15G005490	Cucurbita maxima (Rimu)	cgybcmaB740
CsGy6G004250	CmaCh04G024930	Cucurbita maxima (Rimu)	cgybcmaB835
CsGy6G004250	CmoCh04G026080	Cucurbita moschata (Rifu)	cgybcmoB815
CsGy6G004250	CmoCh15G005550	Cucurbita moschata (Rifu)	cgybcmoB721
CsGy6G004250	Lsi08G006160	Bottle gourd (USVL1VR-Ls)	cgyblsiB444
CsGy6G004250	MELO3C019930.2	Melon (DHL92) v3.6.1	cgybmedB414
CsGy6G004250	CsaV3_6G004590	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G004250	Cla97C08G151410	Watermelon (97103) v2	cgybwmbB464
CsGy6G004250	Bhi04G001285	Wax gourd	cgybwgoB560
CsGy6G004250	Carg01650	Silver-seed gourd	carcgybB0824
CsGy6G004250	Carg15835	Silver-seed gourd	carcgybB0066

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G004250	Cucurbita pepo (Zucchini)	cgybcpeB740
CsGy6G004250	Cucurbita pepo (Zucchini)	cgybcpeB797
CsGy6G004250	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G004250	Wild cucumber (PI 183967)	cgybcpiB288