Cla97C08G151410 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G151410
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 19726898 .. 19727191 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTCTCTACACTTTTCTACTTATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCCAGAATGCTCCTCCCCTCCCCGGGTTCTCGTGTTGCTTCTACGTCGCTACCGTTACCGTTATCGTCACAGTCATCGTATCAAACTGATCTTCTTCATCTTCCTTCCACTACTCGAAAGCTCCACGAAACGATGTCGTCTACTACCACAAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

mRNA sequence

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTCTCTACACTTTTCTACTTATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCCAGAATGCTCCTCCCCTCCCCGGGTTCTCGTGTTGCTTCTACGTCGCTACCGTTACCGTTATCGTCACAGTCATCGTATCAAACTGATCTTCTTCATCTTCCTTCCACTACTCGAAAGCTCCACGAAACGATGTCGTCTACTACCACAAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

Coding sequence (CDS)

ATGAAACCTTTGATCTACAAATCATTGTTGGTTCCAGTTCTCTACACTTTTCTACTTATGTTTTCTCTCCATCTTCACACTCCTACTCAAGCTGCCAGAATGCTCCTCCCCTCCCCGGGTTCTCGTGTTGCTTCTACGTCGCTACCGTTACCGTTATCGTCACAGTCATCGTATCAAACTGATCTTCTTCATCTTCCTTCCACTACTCGAAAGCTCCACGAAACGATGTCGTCTACTACCACAAGCCTTCGTCGAATACCTCGTAGCGGCCCGAATCCCACACAGAACAGGTAA

Protein sequence

MKPLIYKSLLVPVLYTFLLMFSLHLHTPTQAARMLLPSPGSRVASTSLPLPLSSQSSYQTDLLHLPSTTRKLHETMSSTTTSLRRIPRSGPNPTQNR

Homology

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BLAST of Cla97C08G151410 vs. NCBI nr
Match: XP_011656590.1 (PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-06
Identity = 48/101 (47.52%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 1   MKPLIYKSLLVPVLYTFL---LMFSLHLHTPTQAARMLLPSPGSRVASTSLPLPLSSQSS 60
           MKPLI KSLLVP+LYTFL                                          
Sbjct: 41  MKPLISKSLLVPILYTFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 100

Query: 61  YQTDLL-HLPSTTRKLHETMSSTTTSLRRIPRSGPNPTQNR 98
            Q DLL HLP   RKL ET SST+TSLRRIPRSGPNPTQNR
Sbjct: 101 XQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNR 141

The following BLAST results are available for this feature:

BLAST of Cla97C08G151410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656590.1	6.4e-06	47.52	PREDICTED: uncharacterized protein LOC105435754 [Cucumis sativus]	[more]

BLAST of Cla97C08G151410 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C08G151410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G151410 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009812	flavonoid metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:1990135	flavonoid sulfotransferase activity
molecular_function	GO:0008146	sulfotransferase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G151410.1	Cla97C08G151410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G151410	Cla013663	Watermelon (97103) v1	wmwmbB100
Cla97C08G151410	MELO3C019930	Melon (DHL92) v3.5.1	mewmbB307
Cla97C08G151410	ClCG08G008600	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G151410	CmaCh15G005490	Cucurbita maxima (Rimu)	cmawmbB317
Cla97C08G151410	CmaCh04G024930	Cucurbita maxima (Rimu)	cmawmbB788
Cla97C08G151410	CmoCh04G026080	Cucurbita moschata (Rifu)	cmowmbB762
Cla97C08G151410	CmoCh15G005550	Cucurbita moschata (Rifu)	cmowmbB300
Cla97C08G151410	Lsi08G006160	Bottle gourd (USVL1VR-Ls)	lsiwmbB448
Cla97C08G151410	CsGy6G004250	Cucumber (Gy14) v2	cgybwmbB464
Cla97C08G151410	MELO3C019930.2	Melon (DHL92) v3.6.1	medwmbB295
Cla97C08G151410	Carg01650	Silver-seed gourd	carwmbB0864
Cla97C08G151410	Carg15835	Silver-seed gourd	carwmbB0064
Cla97C08G151410	CsaV3_6G004590	Cucumber (Chinese Long) v3	cucwmbB506
Cla97C08G151410	Bhi04G001285	Wax gourd	wgowmbB329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G151410	Watermelon (97103) v2	wmbwmbB143
Cla97C08G151410	Cucumber (Gy14) v1	cgywmbB629
Cla97C08G151410	Wild cucumber (PI 183967)	cpiwmbB514
Cla97C08G151410	Cucumber (Chinese Long) v2	cuwmbB488
Cla97C08G151410	Wax gourd	wgowmbB541