Lsi05G021380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Dof zinc finger protein
Location	chr05 : 28199110 .. 28199631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

mRNA sequence

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Coding sequence (CDS)

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Protein sequence

MEAMMESGSGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW

Homology

[Close]

BLAST of Lsi05G021380 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of Lsi05G021380 vs. Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-28
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

[Close]

BLAST of Lsi05G021380 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

[Close]

BLAST of Lsi05G021380 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-26
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

[Close]

BLAST of Lsi05G021380 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-26
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 1


Query: 16  GGGLKGKGRPQ--EQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIP 75
           GG  + K RPQ  E L CPRC S+NTKFCYYNNYS++QPRYFCK+CRRYWT GG+LRN+P
Sbjct: 45  GGSGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVP 104

Query: 76  VGGGSRKNRKPP----GSVVGGSGSAHHAPPPPAQVYQAHDLNLGF------ATAEATAT 135
           +GGG RKN+       GS    S SA +AP  P+    + ++++             T T
Sbjct: 105 IGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPT 164

Query: 136 TMG---------MENGGHGGFGCYIPN 142
           TMG         M  GG GGF   + N
Sbjct: 165 TMGLFPNVLPTLMPTGGGGGFDFTMDN 191

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BLAST of Lsi05G021380 vs. TrEMBL
Match: A0A0A0L5U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.3e-80
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

[Close]

BLAST of Lsi05G021380 vs. TrEMBL
Match: B9GR41_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s17490g PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

[Close]

BLAST of Lsi05G021380 vs. TrEMBL
Match: U5FT89_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 76/143 (53.15%), Postives = 91/143 (63.64%), Query Frame = 1


Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATAT 134
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F A  ++ A 
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAFPAMQDSQAM 129

Query: 135 TMGMENGGHGGFGCYIPNLMPYS 147
            +        G   +IP  MP S
Sbjct: 130 ELLRSGFASRGLNTFIPTPMPDS 152

[Close]

BLAST of Lsi05G021380 vs. TrEMBL
Match: A0A072TM78_MEDTR (Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g027295 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 73/123 (59.35%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 18  GLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGG 77
           GL+ K RPQEQ+NCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGG
Sbjct: 13  GLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 72

Query: 78  SRKNRKPPGSVVGGSGSAHHAP---PPPAQVYQ----------AHDLNLGFATAEATATT 128
           SRKN+K P S+   + S+   P   PP  QV              DLNL F + E     
Sbjct: 73  SRKNKKIPSSLANPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHN 132

[Close]

BLAST of Lsi05G021380 vs. TrEMBL
Match: B9I901_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 1


Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF 116
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAF 120

[Close]

BLAST of Lsi05G021380 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-29
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of Lsi05G021380 vs. TAIR10
Match: AT4G00940.1 (AT4G00940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-29
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

[Close]

BLAST of Lsi05G021380 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-27
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

[Close]

BLAST of Lsi05G021380 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

[Close]

BLAST of Lsi05G021380 vs. TAIR10
Match: AT2G37590.1 (AT2G37590.1 DNA binding with one finger 2.4)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 7   SGSGGGGGGGGGLKGKGR------------PQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 66
           +GSGGGGGGGGG    G             P+  L CPRC+S+NTKFCY+NNYSLTQPR+
Sbjct: 55  NGSGGGGGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRH 114

Query: 67  FCKSCRRYWTEGGSLRNIPVGGGSRKNRK 84
           FCK+CRRYWT GG+LRN+PVGGG R+NR+
Sbjct: 115 FCKTCRRYWTRGGALRNVPVGGGCRRNRR 143

[Close]

BLAST of Lsi05G021380 vs. NCBI nr
Match: gi|659074919|ref|XP_008437866.1| (PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 154/179 (86.03%), Postives = 156/179 (87.15%), Query Frame = 1


Query: 1   MEAMMESGS------GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60
           MEAMMESG       GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY
Sbjct: 1   MEAMMESGGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60

Query: 61  FCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLG 120
           FCK+CRRYWTEGGSLRNIPVGGGSRKNRKP GSV  GSGS HH  P P QVYQA DLNLG
Sbjct: 61  FCKACRRYWTEGGSLRNIPVGGGSRKNRKPTGSV-SGSGSVHHPQPQP-QVYQAQDLNLG 120

Query: 121 FATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
           FATAEAT     MENGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 FATAEATTA---MENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 174

[Close]

BLAST of Lsi05G021380 vs. NCBI nr
Match: gi|778676830|ref|XP_011650669.1| (PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1


Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

[Close]

BLAST of Lsi05G021380 vs. NCBI nr
Match: gi|743790303|ref|XP_011038563.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica])

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 90/211 (42.65%), Postives = 107/211 (50.71%), Query Frame = 1


Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 34  KPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 93

Query: 82  RKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATATTMGMENG 141
           ++   S V  S S           H +   P   ++  DLNL F A  ++ A  +     
Sbjct: 94  KRSTSSSVAASSSKIPDLNPPSLPHFSSQNPKSTHEGQDLNLAFPAMQDSQAMELLRSGF 153

Query: 142 GHGGFGCYIPNLMP-----YSA-------------------RDTATVEENSG-------- 171
              G   +IP  MP     YS+                   R    ++ENSG        
Sbjct: 154 ASRGLNTFIPTPMPDSNTLYSSGGLPLQELKPTLSFAADGLRSRYGIQENSGRLLFPLGE 213

[Close]

BLAST of Lsi05G021380 vs. NCBI nr
Match: gi|566158538|ref|XP_002301420.2| (DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

[Close]

BLAST of Lsi05G021380 vs. NCBI nr
Match: gi|743827920|ref|XP_011023145.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica])

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1


Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 36  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 95

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 96  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSGHEGQDLNLAFPAMQDSQALEL 155

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 156 LRSGIASRGLNSFIPTPMPDS 176

The following BLAST results are available for this feature:

BLAST of Lsi05G021380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOF25_ARATH	4.2e-28	81.82	Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3	[more]
DOF41_ARATH	7.1e-28	59.63	Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2	[more]
DOF37_ARATH	5.1e-26	69.51	Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2	[more]
DOF46_ARATH	6.6e-26	73.61	Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2	[more]
PBF_MAIZE	8.7e-26	46.94	Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1	[more]

BLAST of Lsi05G021380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5U8_CUCSA	7.3e-80	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1	[more]
B9GR41_POPTR	1.6e-31	53.19	DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s...	[more]
U5FT89_POPTR	3.7e-31	53.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1	[more]
A0A072TM78_MEDTR	4.8e-31	59.35	Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g...	[more]
B9I901_POPTR	1.2e-29	61.26	DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s...	[more]

BLAST of Lsi05G021380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46590.2	2.3e-29	81.82	Dof-type zinc finger DNA-binding family protein	[more]
AT4G00940.1	4.0e-29	59.63	Dof-type zinc finger DNA-binding family protein	[more]
AT3G61850.4	2.9e-27	69.51	Dof-type zinc finger DNA-binding family protein	[more]
AT4G24060.1	3.7e-27	73.61	Dof-type zinc finger DNA-binding family protein	[more]
AT2G37590.1	1.4e-26	62.92	DNA binding with one finger 2.4	[more]

BLAST of Lsi05G021380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074919\|ref\|XP_008437866.1\|	1.2e-80	86.03	PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo]	[more]
gi\|778676830\|ref\|XP_011650669.1\|	1.0e-79	88.00	PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus]	[more]
gi\|743790303\|ref\|XP_011038563.1\|	4.3e-33	42.65	PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica]	[more]
gi\|566158538\|ref\|XP_002301420.2\|	2.4e-31	53.19	DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]	[more]
gi\|743827920\|ref\|XP_011023145.1\|	5.3e-31	53.19	PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021380.1	Lsi05G021380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 24..83 score: 4.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 27..83 score: 2.8
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 31..67 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 29..83 score: 28
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 25..171 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G021380	Csa3G119420	Cucumber (Chinese Long) v2	culsiB209
Lsi05G021380	CSPI03G07780	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G021380	Cucsa.259380	Cucumber (Gy14) v1	cgylsiB415
Lsi05G021380	CmaCh08G001380	Cucurbita maxima (Rimu)	cmalsiB838
Lsi05G021380	CmoCh14G021810	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G021380	CmoCh08G001390	Cucurbita moschata (Rifu)	cmolsiB822
Lsi05G021380	Cla004274	Watermelon (97103) v1	lsiwmB364
Lsi05G021380	Cla021140	Watermelon (97103) v1	lsiwmB365
Lsi05G021380	MELO3C006008	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G021380	MELO3C019379	Melon (DHL92) v3.5.1	lsimeB375
Lsi05G021380	ClCG05G009100	Watermelon (Charleston Gray)	lsiwcgB334
Lsi05G021380	MELO3C006008.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G021380	Cla97C05G091430	Watermelon (97103) v2	lsiwmbB332
Lsi05G021380	Cla97C05G080790	Watermelon (97103) v2	lsiwmbB333
Lsi05G021380	Cla97C01G000310	Watermelon (97103) v2	lsiwmbB319
Lsi05G021380	Bhi01G001132	Wax gourd	lsiwgoB439
Lsi05G021380	Bhi12G000577	Wax gourd	lsiwgoB419
Lsi05G021380	Bhi01G000371	Wax gourd	lsiwgoB433
Lsi05G021380	Cp4.1LG03g15930	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G021380	CsGy5G000240	Cucumber (Gy14) v2	cgyblsiB345
Lsi05G021380	CsGy3G007920	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G021380	Carg25705	Silver-seed gourd	carlsiB110
Lsi05G021380	CsaV3_3G007900	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi05G021380	Lsi09G000090	Bottle gourd (USVL1VR-Ls)	lsilsiB014
Lsi05G021380	Lsi05G001190	Bottle gourd (USVL1VR-Ls)	lsilsiB158

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G021380	Cucumber (Gy14) v1	cgylsiB349
Lsi05G021380	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G021380	Cucurbita maxima (Rimu)	cmalsiB760
Lsi05G021380	Cucurbita maxima (Rimu)	cmalsiB770
Lsi05G021380	Cucurbita moschata (Rifu)	cmolsiB557
Lsi05G021380	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G021380	Cucurbita pepo (Zucchini)	cpelsiB626
Lsi05G021380	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G021380	Wild cucumber (PI 183967)	cpilsiB382
Lsi05G021380	Cucumber (Chinese Long) v2	culsiB378
Lsi05G021380	Melon (DHL92) v3.5.1	lsimeB336
Lsi05G021380	Watermelon (Charleston Gray)	lsiwcgB325
Lsi05G021380	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G021380	Watermelon (97103) v1	lsiwmB375
Lsi05G021380	Melon (DHL92) v3.6.1	lsimedB353
Lsi05G021380	Silver-seed gourd	carlsiB907
Lsi05G021380	Cucumber (Chinese Long) v3	cuclsiB402