Lsi05G021380.1 (mRNA) Bottle gourd (USVL1VR-Ls)

NameLsi05G021380.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDof zinc finger protein
Locationchr05 : 28199110 .. 28199631 (+)
Sequence length522
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

mRNA sequence

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Coding sequence (CDS)

ATGGAGGCGATGATGGAGTCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGAGGGTTGAAGGGAAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAATCAAGCAACACAAAATTCTGTTACTACAATAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACGGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGGTCCCGGAAGAATAGGAAACCACCCGGTTCGGTTGTTGGTGGGTCGGGTTCGGCTCACCACGCGCCGCCGCCGCCGGCGCAGGTGTATCAAGCGCATGATCTGAATTTGGGGTTTGCGACGGCGGAGGCCACGGCGACGACGATGGGGATGGAAAACGGCGGCCACGGAGGATTTGGATGTTATATACCGAATTTGATGCCATATTCAGCACGTGACACGGCGACGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAACGGAATGTTCGGTGGAGGGCCGCCGTGGTAG

Protein sequence

MEAMMESGSGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW
BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1

Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-28
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1

Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-26
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 6.6e-26
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

BLAST of Lsi05G021380.1 vs. Swiss-Prot
Match: PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-26
Identity = 69/147 (46.94%), Postives = 86/147 (58.50%), Query Frame = 1

Query: 16  GGGLKGKGRPQ--EQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIP 75
           GG  + K RPQ  E L CPRC S+NTKFCYYNNYS++QPRYFCK+CRRYWT GG+LRN+P
Sbjct: 45  GGSGERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVP 104

Query: 76  VGGGSRKNRKPP----GSVVGGSGSAHHAPPPPAQVYQAHDLNLGF------ATAEATAT 135
           +GGG RKN+       GS    S SA +AP  P+    + ++++             T T
Sbjct: 105 IGGGCRKNKHASRFVLGSHTSSSSSATYAPLSPSTNASSSNMSINKHMMMVPNMTMPTPT 164

Query: 136 TMG---------MENGGHGGFGCYIPN 142
           TMG         M  GG GGF   + N
Sbjct: 165 TMGLFPNVLPTLMPTGGGGGFDFTMDN 191

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: A0A0A0L5U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.3e-80
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1

Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: B9GR41_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s17490g PE=4 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1

Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: U5FT89_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 76/143 (53.15%), Postives = 91/143 (63.64%), Query Frame = 1

Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATAT 134
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F A  ++ A 
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAFPAMQDSQAM 129

Query: 135 TMGMENGGHGGFGCYIPNLMPYS 147
            +        G   +IP  MP S
Sbjct: 130 ELLRSGFASRGLNTFIPTPMPDS 152

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: A0A072TM78_MEDTR (Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g027295 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 73/123 (59.35%), Postives = 83/123 (67.48%), Query Frame = 1

Query: 18  GLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGG 77
           GL+ K RPQEQ+NCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGG
Sbjct: 13  GLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGG 72

Query: 78  SRKNRKPPGSVVGGSGSAHHAP---PPPAQVYQ----------AHDLNLGFATAEATATT 128
           SRKN+K P S+   + S+   P   PP  QV              DLNL F + E     
Sbjct: 73  SRKNKKIPSSLANPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHN 132

BLAST of Lsi05G021380.1 vs. TrEMBL
Match: B9I901_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 1

Query: 15  GGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPV 74
           G  G++ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PV
Sbjct: 10  GRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 69

Query: 75  GGGSRKNRKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF 116
           GGGSRKN++   S V  S S          +H +   P   ++  DLNL F
Sbjct: 70  GGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAF 120

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-29
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1

Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQE+LNCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 82  RKPPGS 88
           ++   S
Sbjct: 133 KRSSSS 138

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT4G00940.1 (AT4G00940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-29
Identity = 65/109 (59.63%), Postives = 75/109 (68.81%), Query Frame = 1

Query: 24  RPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 83
           RPQE  NCPRC SSNTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 84  PPGSVVGGSGSAHHAP---PP-----------PAQVYQ-AHDLNLGFAT 118
            P      S S  + P   PP           P++ +Q  +DL+L F++
Sbjct: 123 LPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFSS 171

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-27
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 7   SGSGGGGGGGGGLKG-----KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC S+NTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK 84
           YWTEGGSLRN+PVGG SRKN++
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKR 128

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 16  GGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 75
           GG  K +    + +NCPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 76  GGSRKNRKPPGS 88
           GGSRKN++   S
Sbjct: 100 GGSRKNKRSHSS 111

BLAST of Lsi05G021380.1 vs. TAIR10
Match: AT2G37590.1 (AT2G37590.1 DNA binding with one finger 2.4)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1

Query: 7   SGSGGGGGGGGGLKGKGR------------PQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 66
           +GSGGGGGGGGG    G             P+  L CPRC+S+NTKFCY+NNYSLTQPR+
Sbjct: 55  NGSGGGGGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRH 114

Query: 67  FCKSCRRYWTEGGSLRNIPVGGGSRKNRK 84
           FCK+CRRYWT GG+LRN+PVGGG R+NR+
Sbjct: 115 FCKTCRRYWTRGGALRNVPVGGGCRRNRR 143

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|659074919|ref|XP_008437866.1| (PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 154/179 (86.03%), Postives = 156/179 (87.15%), Query Frame = 1

Query: 1   MEAMMESGS------GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60
           MEAMMESG       GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY
Sbjct: 1   MEAMMESGGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60

Query: 61  FCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLG 120
           FCK+CRRYWTEGGSLRNIPVGGGSRKNRKP GSV  GSGS HH  P P QVYQA DLNLG
Sbjct: 61  FCKACRRYWTEGGSLRNIPVGGGSRKNRKPTGSV-SGSGSVHHPQPQP-QVYQAQDLNLG 120

Query: 121 FATAEATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
           FATAEAT     MENGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 FATAEATTA---MENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 174

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|778676830|ref|XP_011650669.1| (PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79
Identity = 154/175 (88.00%), Postives = 157/175 (89.71%), Query Frame = 1

Query: 1   MEAMMESGS--GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60
           MEAMMESG+  GGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPGSVVGGSGSAHHAPPPPAQVYQAHDLNLGFATA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP GS V GSGS HH P P  QVYQA DLNLGFAT 
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGS-VSGSGSVHH-PQPQPQVYQAQDLNLGFATT 120

Query: 121 EATATTMGMENGGHGGFGCYIPNLMPYSARDTATVEENSGNNGYWNGMFGGGPPW 174
            A ATT  M+NGGHGGFGCYIPNLMPYS R+TA VEENSGNNGYWNGMFGGGPPW
Sbjct: 121 -AEATT-AMDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW 171

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|743790303|ref|XP_011038563.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica])

HSP 1 Score: 149.8 bits (377), Expect = 4.3e-33
Identity = 90/211 (42.65%), Postives = 107/211 (50.71%), Query Frame = 1

Query: 22  KGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 34  KPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 93

Query: 82  RKPPGSVVGGSGS----------AHHAPPPPAQVYQAHDLNLGF-ATAEATATTMGMENG 141
           ++   S V  S S           H +   P   ++  DLNL F A  ++ A  +     
Sbjct: 94  KRSTSSSVAASSSKIPDLNPPSLPHFSSQNPKSTHEGQDLNLAFPAMQDSQAMELLRSGF 153

Query: 142 GHGGFGCYIPNLMP-----YSA-------------------RDTATVEENSG-------- 171
              G   +IP  MP     YS+                   R    ++ENSG        
Sbjct: 154 ASRGLNTFIPTPMPDSNTLYSSGGLPLQELKPTLSFAADGLRSRYGIQENSGRLLFPLGE 213

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|566158538|ref|XP_002301420.2| (DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1

Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 14  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 73

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 74  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALEL 133

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 134 LRSGIASRGLNSFIPTPMPDS 154

BLAST of Lsi05G021380.1 vs. NCBI nr
Match: gi|743827920|ref|XP_011023145.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica])

HSP 1 Score: 142.9 bits (359), Expect = 5.3e-31
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 1

Query: 19  LKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGS 78
           L+ K RPQEQLNCPRC S+NTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGS
Sbjct: 36  LERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGS 95

Query: 79  RKNRKPPGSVVGGSGSAHHAP---PP---------PAQVYQAHDLNLGFATAEATATTMG 138
           RKN++   S V  S +    P   PP         P   ++  DLNL F   + +     
Sbjct: 96  RKNKRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSGHEGQDLNLAFPAMQDSQALEL 155

Query: 139 MENG-GHGGFGCYIPNLMPYS 147
           + +G    G   +IP  MP S
Sbjct: 156 LRSGIASRGLNSFIPTPMPDS 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DOF25_ARATH4.2e-2881.82Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3[more]
DOF41_ARATH7.1e-2859.63Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2[more]
DOF37_ARATH5.1e-2669.51Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2[more]
DOF46_ARATH6.6e-2673.61Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2[more]
PBF_MAIZE8.7e-2646.94Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L5U8_CUCSA7.3e-8088.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1[more]
B9GR41_POPTR1.6e-3153.19DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s... [more]
U5FT89_POPTR3.7e-3153.15Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1[more]
A0A072TM78_MEDTR4.8e-3159.35Dof-type zinc finger DNA-binding family protein OS=Medicago truncatula GN=MTR_8g... [more]
B9I901_POPTR1.2e-2961.26DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0014s... [more]
Match NameE-valueIdentityDescription
AT2G46590.22.3e-2981.82 Dof-type zinc finger DNA-binding family protein[more]
AT4G00940.14.0e-2959.63 Dof-type zinc finger DNA-binding family protein[more]
AT3G61850.42.9e-2769.51 Dof-type zinc finger DNA-binding family protein[more]
AT4G24060.13.7e-2773.61 Dof-type zinc finger DNA-binding family protein[more]
AT2G37590.11.4e-2662.92 DNA binding with one finger 2.4[more]
Match NameE-valueIdentityDescription
gi|659074919|ref|XP_008437866.1|1.2e-8086.03PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo][more]
gi|778676830|ref|XP_011650669.1|1.0e-7988.00PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus][more]
gi|743790303|ref|XP_011038563.1|4.3e-3342.65PREDICTED: dof zinc finger protein DOF3.7-like isoform X4 [Populus euphratica][more]
gi|566158538|ref|XP_002301420.2|2.4e-3153.19DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa][more]
gi|743827920|ref|XP_011023145.1|5.3e-3153.19PREDICTED: dof zinc finger protein DOF3.7-like isoform X2 [Populus euphratica][more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi05G021380Lsi05G021380gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G021380.1.CDS.1Lsi05G021380.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi05G021380.1Lsi05G021380.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 24..83
score: 4.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 27..83
score: 2.8
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 31..67
scor
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 29..83
score: 28
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 25..171
score: 9.0