MELO3C006008 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006008
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDof zinc finger protein
Locationchr6 : 537586 .. 538168 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGATGATGGAGTCCGGAGGCAACGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGGCGGTGGAGGGTTGAAGGGAAAAGGAAGGCCACAAGAGCAATTGAACTGCCCAAGATGCAAATCAAGCAACACAAAATTTTGTTACTACAACAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAAGCTTGCCGCCGGTATTGGACGGAGGGTGGTTCCCTAAGGAATATTCCGGTCGGAGGAGGGTCCAGGAAGAACAGGAAACCGACCGGTTCCGTTTCTGGGTCGGGTTCGGTTCACCACCCTCAGCCGCAGCCGCAGGTGTATCAAGCGCAGGATCTGAATTTGGGGTTTGCAACGGCGGAGGCTACGACGGCGATGGAAAACGGCGGGCACGGAGGATTCGGTTGTTACATACCGAATTTGATGCCGTATTCGGGGCGTGAGACGGCGGCGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAATGGCATGTTTGGTGGAGGGCCGCCATGGTAGAAATGCTTAGAGAGATTTTTAATTTTTTTAATAATAATAATAATTATGAGAAGTAATT

mRNA sequence

ATGGAGGCGATGATGGAGTCCGGAGGCAACGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGGCGGTGGAGGGTTGAAGGGAAAAGGAAGGCCACAAGAGCAATTGAACTGCCCAAGATGCAAATCAAGCAACACAAAATTTTGTTACTACAACAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAAGCTTGCCGCCGGTATTGGACGGAGGGTGGTTCCCTAAGGAATATTCCGGTCGGAGGAGGGTCCAGGAAGAACAGGAAACCGACCGGTTCCGTTTCTGGGTCGGGTTCGGTTCACCACCCTCAGCCGCAGCCGCAGGTGTATCAAGCGCAGGATCTGAATTTGGGGTTTGCAACGGCGGAGGCTACGACGGCGATGGAAAACGGCGGGCACGGAGGATTCGGTTGTTACATACCGAATTTGATGCCGTATTCGGGGCGTGAGACGGCGGCGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAATGGCATGTTTGGTGGAGGGCCGCCATGGTAGAAATGCTTAGAGAGATTTTTAATTTTTTTAATAATAATAATAATTATGAGAAGTAATT

Coding sequence (CDS)

ATGGAGGCGATGATGGAGTCCGGAGGCAACGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGGCGGTGGAGGGTTGAAGGGAAAAGGAAGGCCACAAGAGCAATTGAACTGCCCAAGATGCAAATCAAGCAACACAAAATTTTGTTACTACAACAATTATAGTCTCACACAGCCGAGGTATTTTTGCAAAGCTTGCCGCCGGTATTGGACGGAGGGTGGTTCCCTAAGGAATATTCCGGTCGGAGGAGGGTCCAGGAAGAACAGGAAACCGACCGGTTCCGTTTCTGGGTCGGGTTCGGTTCACCACCCTCAGCCGCAGCCGCAGGTGTATCAAGCGCAGGATCTGAATTTGGGGTTTGCAACGGCGGAGGCTACGACGGCGATGGAAAACGGCGGGCACGGAGGATTCGGTTGTTACATACCGAATTTGATGCCGTATTCGGGGCGTGAGACGGCGGCGGTGGAAGAGAATTCCGGTAATAATGGGTATTGGAATGGCATGTTTGGTGGAGGGCCGCCATGGTAG

Protein sequence

MEAMMESGGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKACRRYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQPQVYQAQDLNLGFATAEATTAMENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGPPW*
Homology
[Close]
BLAST of MELO3C006008 vs. TrEMBL
Match: B4MID6_DROWI (Uncharacterized protein (Fragment) OS=Drosophila willistoni GN=Dwil\GK23346 PE=4 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 54/167 (32.34%), Postives = 66/167 (39.52%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKS-SNTKFCYYNNYSLTQPRYFCKACR 67
           GG GGGGGGGGGGGGGG  G G  Q +    +C S +NT + + N          C  C+
Sbjct: 134 GGGGGGGGGGGGGGGGGGGGGGNFQPRDGDWKCNSCNNTNYAWRNE---------CNRCK 193

Query: 68  --RYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQPQVYQAQDLNLGFATAEA 127
             R   EGGS      GGG        GS  G     + +     +Q++D N G      
Sbjct: 194 TPRSGDEGGSSGG---GGGGYGGVGGGGSFGGMNDRGNDRSGGGGFQSRDRNSG------ 253

Query: 128 TTAMENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGG 172
                 GG GG+  Y                 NSG  G   G  GGG
Sbjct: 254 -----GGGGGGYSRY---------------GNNSGGGGGGGGGGGGG 262

[Close]
BLAST of MELO3C006008 vs. TrEMBL
Match: B4MID6_DROWI (Uncharacterized protein (Fragment) OS=Drosophila willistoni GN=Dwil\GK23346 PE=4 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-03
Identity = 54/184 (29.35%), Postives = 66/184 (35.87%), Query Frame = 1 

Query: 8   GG-----------------NGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKS-SNTKFCY 67
           GG                  GGGGGGGGGGGGGG  G G  Q +    +C S +NT + +
Sbjct: 117 GGGGGRFDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNFQPRDGDWKCNSCNNTNYAW 176

Query: 68  YNNYSLTQPRYFCKACR--RYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQP 127
            N          C  C+  R   EGGS      GGG        GS  G     + +   
Sbjct: 177 RNE---------CNRCKTPRSGDEGGSSGG---GGGGYGGVGGGGSFGGMNDRGNDRSGG 236

Query: 128 QVYQAQDLNLGFATAEATTAMENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGM 172
             +Q++D N G            GG GG+  Y                 NSG  G   G 
Sbjct: 237 GGFQSRDRNSG-----------GGGGGGYSRY---------------GNNSGGGGGGGGG 262


HSP 2 Score: 40.4 bits (93), Expect = 2.6e+00
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGGLKGKG 30
           G N GGGGGGGGGGGGG +  G
Sbjct: 246 GNNSGGGGGGGGGGGGGRRDGG 267


HSP 3 Score: 37.7 bits (86), Expect = 1.7e+01
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGGG---GGGGLKGK 29
           SGG GGGGGGGGGG   GGG ++ +
Sbjct: 249 SGGGGGGGGGGGGGRRDGGGSMRSR 273


HSP 4 Score: 36.6 bits (83), Expect = 3.7e+01
Identity = 19/31 (61.29%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGG-------GGGGGLKGKGR 31
           S G GGGGGGGGG       GGGGG  G GR
Sbjct: 92  SRGGGGGGGGGGGGGNRFDRGGGGGGGGGGR 122


HSP 5 Score: 36.2 bits (82), Expect = 4.9e+01
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGG 25
           GG   GGGGGGGGGGGG
Sbjct: 89  GGRSRGGGGGGGGGGGG 105


HSP 6 Score: 36.2 bits (82), Expect = 4.9e+01
Identity = 17/27 (62.96%), Postives = 18/27 (66.67%), Query Frame = 1 

Query: 8   GGNGGGG-----GGGGGGGGGGLKGKG 30
           GG GGGG     GGGGGGGGGG   +G
Sbjct: 100 GGGGGGGNRFDRGGGGGGGGGGRFDRG 126


HSP 7 Score: 35.0 bits (79), Expect = 1.1e+02
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = 1 

Query: 8   GGNGGG------GGGGGGGGGGG 25
           GG GGG      GGGGGGGGGGG
Sbjct: 82  GGRGGGFGGRSRGGGGGGGGGGG 104


HSP 8 Score: 34.7 bits (78), Expect = 1.4e+02
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGGGGG---GGLKGKGRP 32
           +   GGGGGGGGGGGG   GG   + RP
Sbjct: 247 NNSGGGGGGGGGGGGGRRDGGGSMRSRP 274

[Close]
BLAST of MELO3C006008 vs. NCBI nr
Match: gi|968088084|ref|XP_002060889.2| (uncharacterized protein Dwil_GK23346, partial [Drosophila willistoni])

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-06
Identity = 54/167 (32.34%), Postives = 66/167 (39.52%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKS-SNTKFCYYNNYSLTQPRYFCKACR 67
           GG GGGGGGGGGGGGGG  G G  Q +    +C S +NT + + N          C  C+
Sbjct: 134 GGGGGGGGGGGGGGGGGGGGGGNFQPRDGDWKCNSCNNTNYAWRNE---------CNRCK 193

Query: 68  --RYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQPQVYQAQDLNLGFATAEA 127
             R   EGGS      GGG        GS  G     + +     +Q++D N G      
Sbjct: 194 TPRSGDEGGSSGG---GGGGYGGVGGGGSFGGMNDRGNDRSGGGGFQSRDRNSG------ 253

Query: 128 TTAMENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGG 172
                 GG GG+  Y                 NSG  G   G  GGG
Sbjct: 254 -----GGGGGGYSRY---------------GNNSGGGGGGGGGGGGG 262

[Close]
BLAST of MELO3C006008 vs. NCBI nr
Match: gi|968088084|ref|XP_002060889.2| (uncharacterized protein Dwil_GK23346, partial [Drosophila willistoni])

HSP 1 Score: 50.1 bits (118), Expect = 4.7e-03
Identity = 54/184 (29.35%), Postives = 66/184 (35.87%), Query Frame = 1 

Query: 8   GG-----------------NGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKS-SNTKFCY 67
           GG                  GGGGGGGGGGGGGG  G G  Q +    +C S +NT + +
Sbjct: 117 GGGGGRFDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNFQPRDGDWKCNSCNNTNYAW 176

Query: 68  YNNYSLTQPRYFCKACR--RYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQP 127
            N          C  C+  R   EGGS      GGG        GS  G     + +   
Sbjct: 177 RNE---------CNRCKTPRSGDEGGSSGG---GGGGYGGVGGGGSFGGMNDRGNDRSGG 236

Query: 128 QVYQAQDLNLGFATAEATTAMENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGM 172
             +Q++D N G            GG GG+  Y                 NSG  G   G 
Sbjct: 237 GGFQSRDRNSG-----------GGGGGGYSRY---------------GNNSGGGGGGGGG 262


HSP 2 Score: 40.4 bits (93), Expect = 3.7e+00
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGGLKGKG 30
           G N GGGGGGGGGGGGG +  G
Sbjct: 246 GNNSGGGGGGGGGGGGGRRDGG 267


HSP 3 Score: 37.7 bits (86), Expect = 2.4e+01
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGGG---GGGGLKGK 29
           SGG GGGGGGGGGG   GGG ++ +
Sbjct: 249 SGGGGGGGGGGGGGRRDGGGSMRSR 273


HSP 4 Score: 36.6 bits (83), Expect = 5.4e+01
Identity = 19/31 (61.29%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGG-------GGGGGLKGKGR 31
           S G GGGGGGGGG       GGGGG  G GR
Sbjct: 92  SRGGGGGGGGGGGGGNRFDRGGGGGGGGGGR 122


HSP 5 Score: 36.2 bits (82), Expect = 7.0e+01
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 1 

Query: 8   GGNGGGGGGGGGGGGGG 25
           GG   GGGGGGGGGGGG
Sbjct: 89  GGRSRGGGGGGGGGGGG 105


HSP 6 Score: 36.2 bits (82), Expect = 7.0e+01
Identity = 17/27 (62.96%), Postives = 18/27 (66.67%), Query Frame = 1 

Query: 8   GGNGGGG-----GGGGGGGGGGLKGKG 30
           GG GGGG     GGGGGGGGGG   +G
Sbjct: 100 GGGGGGGNRFDRGGGGGGGGGGRFDRG 126


HSP 7 Score: 35.0 bits (79), Expect = 1.6e+02
Identity = 16/23 (69.57%), Postives = 16/23 (69.57%), Query Frame = 1 

Query: 8   GGNGGG------GGGGGGGGGGG 25
           GG GGG      GGGGGGGGGGG
Sbjct: 82  GGRGGGFGGRSRGGGGGGGGGGG 104


HSP 8 Score: 34.7 bits (78), Expect = 2.0e+02
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 1 

Query: 7   SGGNGGGGGGGGGGGG---GGLKGKGRP 32
           +   GGGGGGGGGGGG   GG   + RP
Sbjct: 247 NNSGGGGGGGGGGGGGRRDGGGSMRSRP 274

The following BLAST results are available for this feature:
BLAST of MELO3C006008 vs. TrEMBL
Match NameE-valueIdentityDescription
B4MID6_DROWI1.9e-0632.34Uncharacterized protein (Fragment) OS=Drosophila willistoni GN=Dwil\GK23346 PE=4... [more]
B4MID6_DROWI3.3e-0329.35Uncharacterized protein (Fragment) OS=Drosophila willistoni GN=Dwil\GK23346 PE=4... [more]
BLAST of MELO3C006008 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|968088084|ref|XP_002060889.2|2.7e-0632.34uncharacterized protein Dwil_GK23346, partial [Drosophila willistoni][more]
gi|968088084|ref|XP_002060889.2|4.7e-0329.35uncharacterized protein Dwil_GK23346, partial [Drosophila willistoni][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006008T1MELO3C006008T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 30..89
score: 1.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 33..89
score: 2.5
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 37..73
scor
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 35..89
score: 28
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 28..109
score: 1.7
NoneNo IPR availablePANTHERPTHR31992:SF25SUBFAMILY NOT NAMEDcoord: 28..109
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006008Csa3G119420Cucumber (Chinese Long) v2cumeB236
MELO3C006008Cla021140Watermelon (97103) v1mewmB461
MELO3C006008Cla004880Watermelon (97103) v1mewmB478
MELO3C006008Cla004274Watermelon (97103) v1mewmB466
MELO3C006008ClCG01G000270Watermelon (Charleston Gray)mewcgB420
MELO3C006008ClCG05G009100Watermelon (Charleston Gray)mewcgB430
MELO3C006008Cla97C05G080790Watermelon (97103) v2mewmbB434
MELO3C006008Cla97C05G091430Watermelon (97103) v2mewmbB439
MELO3C006008Cla97C01G000310Watermelon (97103) v2mewmbB421
MELO3C006008Bhi01G000371Wax gourdmewgoB540
MELO3C006008Bhi12G000577Wax gourdmewgoB523
MELO3C006008Bhi01G001132Wax gourdmewgoB550
MELO3C006008CSPI03G07780Wild cucumber (PI 183967)cpimeB230
MELO3C006008Cucsa.259380Cucumber (Gy14) v1cgymeB439
MELO3C006008CmoCh14G021810Cucurbita moschata (Rifu)cmomeB230
MELO3C006008Lsi05G021380Bottle gourd (USVL1VR-Ls)lsimeB378
MELO3C006008Lsi09G000090Bottle gourd (USVL1VR-Ls)lsimeB031
MELO3C006008Cp4.1LG03g15930Cucurbita pepo (Zucchini)cpemeB585
MELO3C006008CsGy3G007920Cucumber (Gy14) v2cgybmeB200
MELO3C006008Carg25705Silver-seed gourdcarmeB0128
MELO3C006008CsaV3_3G007900Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C006008MELO3C019379Melon (DHL92) v3.5.1memeB150
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006008Cucumber (Chinese Long) v3cucmeB411
MELO3C006008Melon (DHL92) v3.5.1memeB018
MELO3C006008Cucumber (Gy14) v1cgymeB369
MELO3C006008Cucurbita maxima (Rimu)cmameB009
MELO3C006008Cucurbita maxima (Rimu)cmameB242
MELO3C006008Cucurbita maxima (Rimu)cmameB766
MELO3C006008Cucurbita maxima (Rimu)cmameB771
MELO3C006008Cucurbita moschata (Rifu)cmomeB572
MELO3C006008Cucurbita moschata (Rifu)cmomeB755
MELO3C006008Wild cucumber (PI 183967)cpimeB399
MELO3C006008Cucumber (Chinese Long) v2cumeB402
MELO3C006008Watermelon (Charleston Gray)mewcgB427
MELO3C006008Cucurbita pepo (Zucchini)cpemeB698
MELO3C006008Cucurbita pepo (Zucchini)cpemeB815
MELO3C006008Cucumber (Gy14) v2cgybmeB349
MELO3C006008Silver-seed gourdcarmeB0968