CmoCh14G021810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G021810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dof zinc finger protein
Location	Cmo_Chr14 : 15617914 .. 15618414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCATGATGCAATCCGGCAGCGGAGGCGGCGGTGGAGGAGGCTTCAAGGCCAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAGTCGACCAACACAAAATTCTGCTACTACAATAACTACAGCCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACCGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGCTCCCGGAAGAATCGTAAACCGCCGGCTTCGGTTACCGGGTCAGCTTCGGCCAACCACGCGCCGCCGCAGCAGGTATACCAAGCCCATGATCTGAACTTGGGTTTTCCGACGACGACGGCGGCGGCGGCGGCGGCGGGGATAGAAAACGGCGGGCACGGAGGATTTGGATTTTACATACCGAATTTGATGCCGTATCCGGCCCGAGACACGGCGGTGGAAGAGAATCCTGGTAGTAATGGGTATTGGAATGGGATGTTTAGTGGAGGGCCATGGTAG

mRNA sequence

ATGGAGGCCATGATGCAATCCGGCAGCGGAGGCGGCGGTGGAGGAGGCTTCAAGGCCAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAGTCGACCAACACAAAATTCTGCTACTACAATAACTACAGCCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACCGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGCTCCCGGAAGAATCGTAAACCGCCGGCTTCGGTTACCGGGTCAGCTTCGGCCAACCACGCGCCGCCGCAGCAGGTATACCAAGCCCATGATCTGAACTTGGGTTTTCCGACGACGACGGCGGCGGCGGCGGCGGCGGGGATAGAAAACGGCGGGCACGGAGGATTTGGATTTTACATACCGAATTTGATGCCGTATCCGGCCCGAGACACGGCGGTGGAAGAGAATCCTGGTAGTAATGGGTATTGGAATGGGATGTTTAGTGGAGGGCCATGGTAG

Coding sequence (CDS)

ATGGAGGCCATGATGCAATCCGGCAGCGGAGGCGGCGGTGGAGGAGGCTTCAAGGCCAAGGGAAGGCCACAAGAGCAATTGAACTGCCCAAGGTGCAAGTCGACCAACACAAAATTCTGCTACTACAATAACTACAGCCTCACACAGCCGAGGTATTTTTGCAAATCTTGCCGCCGGTATTGGACCGAGGGCGGTTCTCTTAGGAACATCCCTGTCGGAGGAGGCTCCCGGAAGAATCGTAAACCGCCGGCTTCGGTTACCGGGTCAGCTTCGGCCAACCACGCGCCGCCGCAGCAGGTATACCAAGCCCATGATCTGAACTTGGGTTTTCCGACGACGACGGCGGCGGCGGCGGCGGCGGGGATAGAAAACGGCGGGCACGGAGGATTTGGATTTTACATACCGAATTTGATGCCGTATCCGGCCCGAGACACGGCGGTGGAAGAGAATCCTGGTAGTAATGGGTATTGGAATGGGATGTTTAGTGGAGGGCCATGGTAG

Homology

[Close]

BLAST of CmoCh14G021810 vs. Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 6.2e-29
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQE+LNCPRC STNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 80  RKPPAS 86
           ++  +S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of CmoCh14G021810 vs. Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 22  RPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 81
           RPQE  NCPRC S+NTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 82  PPASVTGSASANHAPPQQVYQAHDLNLGFPTTTAAAAA 120
            P   + ++S+    P       DLN  F  T++A+++
Sbjct: 123 LPFPNSSTSSSTKNLP-------DLNPPFVFTSSASSS 153

[Close]

BLAST of CmoCh14G021810 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 6.8e-28
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 14  GGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 73
           GG  KA+    + +NCPRC STNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 74  GGSRKNRKPPASVTGSASANHAPPQQ 100
           GGSRKN++  +S +   S NH+   Q
Sbjct: 100 GGSRKNKRSHSS-SSDISNNHSDSTQ 124

[Close]

BLAST of CmoCh14G021810 vs. Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 7   SGSGGGGGGGFK-------AKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC STNTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK---PPASVTGSASANHAPP 98
           YWTEGGSLRN+PVGG SRKN++   P AS +     +  PP
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPP 147

[Close]

BLAST of CmoCh14G021810 vs. Swiss-Prot
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 15  GGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGG 74
           GG + +        CPRC+ST+TKFCYYNNYSL+QPRYFCK+CRRYWT+GG+LRNIPVGG
Sbjct: 61  GGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGG 120

Query: 75  GSRKNRKPPASVTGSASANHAPPQQVYQAHDLNLGFPTTTAAAAAAGIENGGHGGFGF 133
           G RKN+KP +S + S++++   P  +  A+       T+   A A   +N  H   GF
Sbjct: 121 GCRKNKKPSSSNSSSSTSSGKKPSNIVTAN-------TSDLMALAHSHQNYQHSPLGF 171

[Close]

BLAST of CmoCh14G021810 vs. TrEMBL
Match: A0A0A0L5U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-70
Identity = 135/171 (78.95%), Postives = 144/171 (84.21%), Query Frame = 1


Query: 1   MEAMMQSGS----GGGGGGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKS 60
           MEAMM+SG+    GGGGGGG K KGRPQEQLNCPRCKS+NTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPASVTGSASANHAPPQ-QVYQAHDLNLGFPTTTA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP  SV+GS S +H  PQ QVYQA DLNLGF TT  
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGSVSGSGSVHHPQPQPQVYQAQDLNLGFATTAE 120

Query: 121 AAAAAGIENGGHGGFGFYIPNLMPYPARDT-AVEENPGSNGYWNGMFSGGP 166
           A  A  ++NGGHGGFG YIPNLMPY  R+T AVEEN G+NGYWNGMF GGP
Sbjct: 121 ATTA--MDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGP 169

[Close]

BLAST of CmoCh14G021810 vs. TrEMBL
Match: B9GR41_POPTR (DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s17490g PE=4 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 76/136 (55.88%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 17  KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 76

Query: 80  -RKPPASVTGSASANHAP--------------PQQVYQAHDLNLGFPTTTAAAAAAGIEN 139
            R   +SV  SA+ +  P              P+  ++  DLNL FP    + A   + +
Sbjct: 77  KRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALELLRS 136

[Close]

BLAST of CmoCh14G021810 vs. TrEMBL
Match: A0A0D2MKN3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G076400 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.1e-32
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 22  RPQEQ--LNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 81
           RPQ++  LNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRNIPVGGGSRKN
Sbjct: 35  RPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKN 94

Query: 82  RKPPASVTGSASANHAPPQQVYQAHDLNLGFPTTTAAAAAAGIENGGH--GGFGFYIPNL 141
           ++P +S +  + ++ +   +++Q  DLNL F TTT       +         F  +IP  
Sbjct: 95  KRPSSSFSSPSLSSSSKNPKIHQPQDLNLAFKTTTQGYTCGNVPELVQIPNSFSSFIPMP 154

[Close]

BLAST of CmoCh14G021810 vs. TrEMBL
Match: U5FT89_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.1e-32
Identity = 76/150 (50.67%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 4   MMQSGSGGGGGGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTE 63
           M +  S   G  G + K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTE
Sbjct: 1   MDEMASNSCGRPGVERKPRPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE 60

Query: 64  GGSLRNIPVGGGSRKNRKPPASVTGSASA-------------NHAPPQQVYQAHDLNLGF 123
           GGSLRN+PVGGGSRKN++  +S   ++S+             +   P+  ++  DLNL F
Sbjct: 61  GGSLRNVPVGGGSRKNKRSTSSSVATSSSKLPDLNPPSLSHFSSQNPKSTHEGQDLNLAF 120

Query: 124 PTTTAAAAAAGIENG-GHGGFGFYIPNLMP 140
           P    + A   + +G    G   +IP  MP
Sbjct: 121 PAMQDSQAMELLRSGFASRGLNTFIPTPMP 150

[Close]

BLAST of CmoCh14G021810 vs. TrEMBL
Match: A0A0K8K644_CAJCA (Dof protein OS=Cajanus cajan GN=Dof5 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 17  KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 76

Query: 80  RKPPASVTGSASANHAP--------------PQQVYQAHDLNLGFPT 113
           +K  ++ + S+S++  P              P+ ++   DLNL FP+
Sbjct: 77  KKVTSATSSSSSSSKVPDLNPPNLSSVSAQNPKIMHGGQDLNLAFPS 123

[Close]

BLAST of CmoCh14G021810 vs. TAIR10
Match: AT2G46590.2 (AT2G46590.2 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQE+LNCPRC STNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRN+PVGG SRKN
Sbjct: 73  KARPQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKN 132

Query: 80  RKPPAS 86
           ++  +S
Sbjct: 133 KRSSSS 138

[Close]

BLAST of CmoCh14G021810 vs. TAIR10
Match: AT4G00940.1 (AT4G00940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 127.5 bits (319), Expect = 7.7e-30
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 22  RPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 81
           RPQE  NCPRC S+NTKFCYYNNYSL QPRY CKSCRRYWTEGGSLRN+PVGGGSRKN+K
Sbjct: 63  RPQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122

Query: 82  PPASVTGSASANHAPPQQVYQAHDLNLGFPTTTAAAAA 120
            P   + ++S+    P       DLN  F  T++A+++
Sbjct: 123 LPFPNSSTSSSTKNLP-------DLNPPFVFTSSASSS 153

[Close]

BLAST of CmoCh14G021810 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-29
Identity = 59/86 (68.60%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 14  GGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVG 73
           GG  KA+    + +NCPRC STNTKFCYYNNYSLTQPRYFCK CRRYWTEGGSLRNIPVG
Sbjct: 40  GGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

Query: 74  GGSRKNRKPPASVTGSASANHAPPQQ 100
           GGSRKN++  +S +   S NH+   Q
Sbjct: 100 GGSRKNKRSHSS-SSDISNNHSDSTQ 124

[Close]

BLAST of CmoCh14G021810 vs. TAIR10
Match: AT3G61850.4 (AT3G61850.4 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 124.0 bits (310), Expect = 8.5e-29
Identity = 63/101 (62.38%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 7   SGSGGGGGGGFK-------AKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRR 66
           + S GG GG           K RPQE++NCPRC STNTKFCYYNNYSLTQPRYFCK CRR
Sbjct: 47  TASNGGSGGNTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRR 106

Query: 67  YWTEGGSLRNIPVGGGSRKNRK---PPASVTGSASANHAPP 98
           YWTEGGSLRN+PVGG SRKN++   P AS +     +  PP
Sbjct: 107 YWTEGGSLRNVPVGGSSRKNKRSSTPLASPSNPKLPDLNPP 147

[Close]

BLAST of CmoCh14G021810 vs. TAIR10
Match: AT5G62940.1 (AT5G62940.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1


Query: 15  GGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGG 74
           GG + +        CPRC+ST+TKFCYYNNYSL+QPRYFCK+CRRYWT+GG+LRNIPVGG
Sbjct: 61  GGRRLRPPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGG 120

Query: 75  GSRKNRKPPASVTGSASANHAPPQQVYQAHDLNLGFPTTTAAAAAAGIENGGHGGFGF 133
           G RKN+KP +S + S++++   P  +  A+       T+   A A   +N  H   GF
Sbjct: 121 GCRKNKKPSSSNSSSSTSSGKKPSNIVTAN-------TSDLMALAHSHQNYQHSPLGF 171

[Close]

BLAST of CmoCh14G021810 vs. NCBI nr
Match: gi|778676830|ref|XP_011650669.1| (PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-70
Identity = 135/171 (78.95%), Postives = 144/171 (84.21%), Query Frame = 1


Query: 1   MEAMMQSGS----GGGGGGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKS 60
           MEAMM+SG+    GGGGGGG K KGRPQEQLNCPRCKS+NTKFCYYNNYSLTQPRYFCKS
Sbjct: 1   MEAMMESGANGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKS 60

Query: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPPASVTGSASANHAPPQ-QVYQAHDLNLGFPTTTA 120
           CRRYWTEGGSLRNIPVGGGSRKNRKP  SV+GS S +H  PQ QVYQA DLNLGF TT  
Sbjct: 61  CRRYWTEGGSLRNIPVGGGSRKNRKPHGSVSGSGSVHHPQPQPQVYQAQDLNLGFATTAE 120

Query: 121 AAAAAGIENGGHGGFGFYIPNLMPYPARDT-AVEENPGSNGYWNGMFSGGP 166
           A  A  ++NGGHGGFG YIPNLMPY  R+T AVEEN G+NGYWNGMF GGP
Sbjct: 121 ATTA--MDNGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGP 169

[Close]

BLAST of CmoCh14G021810 vs. NCBI nr
Match: gi|659074919|ref|XP_008437866.1| (PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 4.7e-69
Identity = 134/175 (76.57%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MEAMMQSGS--------GGGGGGGFKAKGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRY 60
           MEAMM+SG         GGGGGGG K KGRPQEQLNCPRCKS+NTKFCYYNNYSLTQPRY
Sbjct: 1   MEAMMESGGNGGGGGGGGGGGGGGLKGKGRPQEQLNCPRCKSSNTKFCYYNNYSLTQPRY 60

Query: 61  FCKSCRRYWTEGGSLRNIPVGGGSRKNRKPPASVTGSASANHAPPQ-QVYQAHDLNLGFP 120
           FCK+CRRYWTEGGSLRNIPVGGGSRKNRKP  SV+GS S +H  PQ QVYQA DLNLGF 
Sbjct: 61  FCKACRRYWTEGGSLRNIPVGGGSRKNRKPTGSVSGSGSVHHPQPQPQVYQAQDLNLGFA 120

Query: 121 TTTAAAAAAGIENGGHGGFGFYIPNLMPYPARDT-AVEENPGSNGYWNGMFSGGP 166
           T  A  A   +ENGGHGGFG YIPNLMPY  R+T AVEEN G+NGYWNGMF GGP
Sbjct: 121 TAEATTA---MENGGHGGFGCYIPNLMPYSGRETAAVEENSGNNGYWNGMFGGGP 172

[Close]

BLAST of CmoCh14G021810 vs. NCBI nr
Match: gi|566158538|ref|XP_002301420.2| (DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa])

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 76/136 (55.88%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 17  KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 76

Query: 80  -RKPPASVTGSASANHAP--------------PQQVYQAHDLNLGFPTTTAAAAAAGIEN 139
            R   +SV  SA+ +  P              P+  ++  DLNL FP    + A   + +
Sbjct: 77  KRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQALELLRS 136

[Close]

BLAST of CmoCh14G021810 vs. NCBI nr
Match: gi|743827924|ref|XP_011023146.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X3 [Populus euphratica])

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 76/136 (55.88%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 35  KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 94

Query: 80  -RKPPASVTGSASANHAP--------------PQQVYQAHDLNLGFPTTTAAAAAAGIEN 139
            R   +SV  SA+ +  P              P+  ++  DLNL FP    + A   + +
Sbjct: 95  KRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSGHEGQDLNLAFPAMQDSQALELLRS 154

[Close]

BLAST of CmoCh14G021810 vs. NCBI nr
Match: gi|743827916|ref|XP_011023144.1| (PREDICTED: dof zinc finger protein DOF3.7-like isoform X1 [Populus euphratica])

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-32
Identity = 76/136 (55.88%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 20  KGRPQEQLNCPRCKSTNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKN 79
           K RPQEQLNCPRC STNTKFCYYNNYSLTQPRYFCK+CRRYWTEGGSLRN+PVGGGSRKN
Sbjct: 42  KARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKN 101

Query: 80  -RKPPASVTGSASANHAP--------------PQQVYQAHDLNLGFPTTTAAAAAAGIEN 139
            R   +SV  SA+ +  P              P+  ++  DLNL FP    + A   + +
Sbjct: 102 KRSTSSSVAASAAPSKLPDLNPPNLSHFSSQNPKSGHEGQDLNLAFPAMQDSQALELLRS 161

The following BLAST results are available for this feature:

BLAST of CmoCh14G021810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOF25_ARATH	6.2e-29	83.33	Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3	[more]
DOF41_ARATH	1.4e-28	62.24	Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2	[more]
DOF46_ARATH	6.8e-28	68.60	Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2	[more]
DOF37_ARATH	1.5e-27	62.38	Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2	[more]
DOF56_ARATH	2.2e-26	50.00	Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2	[more]

BLAST of CmoCh14G021810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5U8_CUCSA	2.3e-70	78.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119420 PE=4 SV=1	[more]
B9GR41_POPTR	1.1e-32	55.88	DOF AFFECTING GERMINATION 2 family protein OS=Populus trichocarpa GN=POPTR_0002s...	[more]
A0A0D2MKN3_GOSRA	7.1e-32	56.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G076400 PE=4 SV=1	[more]
U5FT89_POPTR	7.1e-32	50.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09640g PE=4 SV=1	[more]
A0A0K8K644_CAJCA	1.2e-31	62.62	Dof protein OS=Cajanus cajan GN=Dof5 PE=4 SV=1	[more]

BLAST of CmoCh14G021810 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46590.2	3.5e-30	83.33	Dof-type zinc finger DNA-binding family protein	[more]
AT4G00940.1	7.7e-30	62.24	Dof-type zinc finger DNA-binding family protein	[more]
AT4G24060.1	3.8e-29	68.60	Dof-type zinc finger DNA-binding family protein	[more]
AT3G61850.4	8.5e-29	62.38	Dof-type zinc finger DNA-binding family protein	[more]
AT5G62940.1	1.2e-27	50.00	Dof-type zinc finger DNA-binding family protein	[more]

BLAST of CmoCh14G021810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676830\|ref\|XP_011650669.1\|	3.2e-70	78.95	PREDICTED: dof zinc finger protein DOF3.7 [Cucumis sativus]	[more]
gi\|659074919\|ref\|XP_008437866.1\|	4.7e-69	76.57	PREDICTED: dof zinc finger protein DOF3.7-like [Cucumis melo]	[more]
gi\|566158538\|ref\|XP_002301420.2\|	1.6e-32	55.88	DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]	[more]
gi\|743827924\|ref\|XP_011023146.1\|	3.5e-32	55.88	PREDICTED: dof zinc finger protein DOF3.7-like isoform X3 [Populus euphratica]	[more]
gi\|743827916\|ref\|XP_011023144.1\|	3.5e-32	55.88	PREDICTED: dof zinc finger protein DOF3.7-like isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G021810.1	CmoCh14G021810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 22..81 score: 5.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 25..81 score: 2.1
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 29..65 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 27..81 score: 28
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 23..164 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G021810	Cucsa.259380	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G021810	CmaCh08G001380	Cucurbita maxima (Rimu)	cmacmoB882
CmoCh14G021810	Cla021140	Watermelon (97103) v1	cmowmB231
CmoCh14G021810	Csa3G119420	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G021810	MELO3C006008	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G021810	CSPI03G07780	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G021810	Lsi05G021380	Bottle gourd (USVL1VR-Ls)	cmolsiB233
CmoCh14G021810	Lsi09G000090	Bottle gourd (USVL1VR-Ls)	cmolsiB214
CmoCh14G021810	Cp4.1LG03g15930	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G021810	MELO3C006008.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G021810	CsaV3_3G007900	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G021810	Cla97C01G000310	Watermelon (97103) v2	cmowmbB227
CmoCh14G021810	Cla97C05G091430	Watermelon (97103) v2	cmowmbB242
CmoCh14G021810	Cla97C05G080790	Watermelon (97103) v2	cmowmbB243
CmoCh14G021810	Bhi12G000577	Wax gourd	cmowgoB0297
CmoCh14G021810	Bhi01G000371	Wax gourd	cmowgoB0303
CmoCh14G021810	CsGy3G007920	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G021810	Carg25705	Silver-seed gourd	carcmoB0170

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G021810	CmoCh15G010790	Cucurbita moschata (Rifu)	cmocmoB193

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G021810	Cucurbita moschata (Rifu)	cmocmoB212
CmoCh14G021810	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh14G021810	Cucumber (Gy14) v1	cgycmoB0597
CmoCh14G021810	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G021810	Cucurbita maxima (Rimu)	cmacmoB799
CmoCh14G021810	Wild cucumber (PI 183967)	cmocpiB257
CmoCh14G021810	Cucumber (Chinese Long) v2	cmocuB251
CmoCh14G021810	Melon (DHL92) v3.5.1	cmomeB198
CmoCh14G021810	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G021810	Watermelon (97103) v1	cmowmB234
CmoCh14G021810	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G021810	Cucumber (Gy14) v2	cgybcmoB568
CmoCh14G021810	Melon (DHL92) v3.6.1	cmomedB219
CmoCh14G021810	Silver-seed gourd	carcmoB1330
CmoCh14G021810	Cucumber (Chinese Long) v3	cmocucB0296