Lsi05G009970 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G009970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionC2H2 type zinc finger transcription factor family protein
Locationchr05 : 17422250 .. 17422840 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

mRNA sequence

ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

Coding sequence (CDS)

ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

Protein sequence

MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQHHVDDEVLHVLKKKKKNLVNLELKMGNLGDDSSNEELDLELHL
Homology
[Close]
BLAST of Lsi05G009970 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-12
Identity = 62/171 (36.26%), Postives = 90/171 (52.63%), Query Frame = 1 

Query: 39  FQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYP 98
           F WP ++Y C+FCKREF+SAQALGGHMNVHRRDRAR+RL  S  + +  +        YP
Sbjct: 40  FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSP------PYP 99

Query: 99  NPN-----IANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQ 158
           NPN     +AN SP   +   +   +LS  S  +     I S S  + + P  A   +  
Sbjct: 100 NPNYSYSTMAN-SPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPENACKTKKS 159

Query: 159 HHVDD--EVLHVLKK------KKKNLVNLELKMGNLGDDSSNEELDLELHL 197
             + +  E      K      +   +++LEL++G + +  S ++LDLEL L
Sbjct: 160 SLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINE--SEQDLDLELRL 201

[Close]
BLAST of Lsi05G009970 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 25 WGYVKEETFSSNNQF------QWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          W + +E  F+S  ++       WP ++Y C+FC REFKSAQALGGHMNVHRRDRAR++
Sbjct: 28 WPFREERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLK 85

[Close]
BLAST of Lsi05G009970 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 1 

Query: 43 AKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          +++Y C+FC R F +AQALGGHMN+HRRDRA++R
Sbjct: 32 SRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLR 65

[Close]
BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A0A0L7I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G392775 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1 

Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 33  MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 92

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 93  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 152

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 153 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 212

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 213 ELKMGSLGDASSNNEDLDLELHL 228

[Close]
BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A067JP76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 30  EETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNN 89
           E+  SS++ F WP +NY C+FCKR+F SAQALGGHMNVHRRDRA +  LPSWV D     
Sbjct: 9   EDDNSSSSGFLWPQRNYTCSFCKRQFNSAQALGGHMNVHRRDRAMLIQLPSWVFD----- 68

Query: 90  HNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNP 145
                C  PNPN     PS  +  SS   S  S + D   KK +    + NN +P
Sbjct: 69  -----CPNPNPNF----PSSASLSSSTATSSPSHNNDNNNKKMLPYPYYYNNSSP 109

[Close]
BLAST of Lsi05G009970 vs. TrEMBL
Match: V4S3L8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006961mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 1 

Query: 6   YMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHM 65
           Y N N+ N  +   QQ+QQ  Y +E      + F WP ++Y C+FCKREF+SAQALGGHM
Sbjct: 30  YNNQNSGNKMKDSCQQRQQQSYGEEYL----SGFSWPPRSYTCSFCKREFRSAQALGGHM 89

Query: 66  NVHRRDRARMRLLPSWVAD---NNNNNHNNYYC--------SYPNPNIANFS--PSCFNF 125
           NVHRRDRAR+R+ P    D   NNN N+  Y            PNPN  NFS  P    F
Sbjct: 90  NVHRRDRARLRISPPTPKDIIVNNNINNGQYPLLNLNLNPNPNPNPN-PNFSTPPLVSPF 149

Query: 126 RSSNKNSLSSSSQDQEIKKAIGSCSWNNNY---NPSLALHDQDQHHVDDEVLHVLKKKKK 185
            S +  S +SSS+ ++     G+ S  ++      S +   +     +++    L KK  
Sbjct: 150 SSFSSQSSASSSEIKKWSALTGALSPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGG 209

Query: 186 NLVNLELKMGNLGDDSSNEELDLELHL 197
            +V L+L++G + D  S E+LDLEL L
Sbjct: 210 EIVRLDLEIGVISD--SKEDLDLELRL 229

[Close]
BLAST of Lsi05G009970 vs. TrEMBL
Match: M5VLU7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024794mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 1 

Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADN---NNNNHNNYYCSY 100
           W AKNY C+FCKREF+SAQALGGHMNVHRRDRAR+RLLP  ++     +N N ++Y+   
Sbjct: 18  WAAKNYACSFCKREFRSAQALGGHMNVHRRDRARLRLLPPSLSSEICPHNPNPSSYFSPS 77

Query: 101 PNPNIANFS---------PSCFNFRSSNKNSL-SSSSQDQEIKKAIGSCSWNNNYNPSLA 160
            + + ++ S          SC +  S +  +L S++S     KK     +   N+ P+L 
Sbjct: 78  SSSSSSSLSSSKGLPHNYSSCHSLLSPSLRALMSATSSTDGNKKPKFKYNSPQNHVPNLI 137

Query: 161 LHDQDQHHVDDEVLHVLK-----------------KKKKNLVNLELKMGNLGDDSSNEEL 197
                +  VD E   +LK                 KK+ N++ L+L MG   D    EE+
Sbjct: 138 PKKGKRGAVDHEAGEILKGFAQKDLDDEFNKVDDLKKESNIIRLDLDMGFFKD--HKEEV 197

[Close]
BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A078FK64_BRANA (BnaC04g48270D protein OS=Brassica napus GN=BnaC04g48270D PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-14
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNP 100
           WP KNY C+FC+R+F+SAQALGGHMNVHRRDRA++R +PSW+ +     H +     PNP
Sbjct: 43  WPPKNYTCSFCRRDFRSAQALGGHMNVHRRDRAKLRQIPSWLFE----PHQHVPVGNPNP 102

Query: 101 NIANFSPS 109
           N  + SPS
Sbjct: 103 NFGSSSPS 106

[Close]
BLAST of Lsi05G009970 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 62/175 (35.43%), Postives = 85/175 (48.57%), Query Frame = 1 

Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNP 100
           WP KNY C+FC+REF+SAQALGGHMNVHRRDRA++R +PSW+ +     H++   + PNP
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFE----PHHHTPIANPNP 103

Query: 101 NI----------ANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHD 160
           N           A+  PS  N RS      S+     +   + G    +   N S     
Sbjct: 104 NFSSSSSSSTTTAHLEPSLTNQRSKTTPFPSARFDLLDSTTSYGGLMMDREKNKSNVCSR 163

Query: 161 QDQHHVDDEVLHV---------LKKKKKNLVNLELKMGNLGDDSSNEELDLELHL 197
           + +    D    V         + KK   ++ LEL M      + N+ LDLEL L
Sbjct: 164 EIKKSAIDACHSVRCEISRGDLMNKKDDQVMGLELGMSL---RNPNQVLDLELRL 211

[Close]
BLAST of Lsi05G009970 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 62/171 (36.26%), Postives = 90/171 (52.63%), Query Frame = 1 

Query: 39  FQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYP 98
           F WP ++Y C+FCKREF+SAQALGGHMNVHRRDRAR+RL  S  + +  +        YP
Sbjct: 40  FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSP------PYP 99

Query: 99  NPN-----IANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQ 158
           NPN     +AN SP   +   +   +LS  S  +     I S S  + + P  A   +  
Sbjct: 100 NPNYSYSTMAN-SPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPENACKTKKS 159

Query: 159 HHVDD--EVLHVLKK------KKKNLVNLELKMGNLGDDSSNEELDLELHL 197
             + +  E      K      +   +++LEL++G + +  S ++LDLEL L
Sbjct: 160 SLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINE--SEQDLDLELRL 201

[Close]
BLAST of Lsi05G009970 vs. TAIR10
Match: AT5G06070.1 (AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 25 WGYVKEETFSSNNQF------QWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          W + +E  F+S  ++       WP ++Y C+FC REFKSAQALGGHMNVHRRDRAR++
Sbjct: 28 WPFREERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLK 85

[Close]
BLAST of Lsi05G009970 vs. TAIR10
Match: AT4G17810.1 (AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 1  MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
          M+ GA+M N     + + + +  +    +++T  + +   WP ++Y CNFC+REF+SAQA
Sbjct: 1  MNGGAWMWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQA 60

Query: 61 LGGHMNVHRRDRARMR 77
          LGGHMNVHRRDRA  R
Sbjct: 61 LGGHMNVHRRDRASSR 76

[Close]
BLAST of Lsi05G009970 vs. TAIR10
Match: AT2G37740.1 (AT2G37740.1 zinc-finger protein 10)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1 

Query: 15  KQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRAR 74
           K  +E   ++  + +++   S     WP ++Y C+FC+REFKSAQALGGHMNVHRRDRAR
Sbjct: 12  KSNKESSWEELAFAEDDAAGS----LWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRAR 71

Query: 75  MR------LLPSWVADNNNNNH---NNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSS 125
           ++      L P   +     +H   +N + +     + N  P+ F  + S    LSSSS
Sbjct: 72  LKQADDQYLFPKSSSSPEYPSHKDSDNIHETSCYTLVFNTKPNYFKTQHSCVIDLSSSS 126

[Close]
BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|659109369|ref|XP_008454679.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 1.8e-72
Identity = 161/202 (79.70%), Postives = 173/202 (85.64%), Query Frame = 1 

Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYM+NNTNNGKQQQ+QQQQ+ GYVKE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 1   MDNGAYMSNNTNNGKQQQQQQQQR-GYVKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 60

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN  NFSPSCFNFR SSNKNS
Sbjct: 61  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFPNFSPSCFNFRSSSNKNS 120

Query: 121 LSSSSQDQEIKKAIGSCSWNNNYNP-SLALHDQDQHHV---DDEVLHVLKKKKKNLVNLE 180
           L SS QDQ+ KK IGSCSWNNNY P SL +   DQ HV    D+VLHV KKKKK+LVNLE
Sbjct: 121 LCSSLQDQD-KKEIGSCSWNNNYKPSSLFVPHDDQEHVGDDSDQVLHVFKKKKKSLVNLE 180

Query: 181 LKMGNLGDDSS-NEELDLELHL 197
           LKMG+LGD SS NE+LDLELHL
Sbjct: 181 LKMGSLGDASSNNEDLDLELHL 196

[Close]
BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|778688627|ref|XP_011652797.1| (PREDICTED: uncharacterized protein LOC101216448 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1 

Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 127 MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 186

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 187 LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 246

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 247 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 306

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 307 ELKMGSLGDASSNNEDLDLELHL 322

[Close]
BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|700202792|gb|KGN57925.1| (hypothetical protein Csa_3G392775 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1 

Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 33  MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 92

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 93  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 152

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 153 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 212

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 213 ELKMGSLGDASSNNEDLDLELHL 228

[Close]
BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|802788051|ref|XP_012092080.1| (PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas])

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-16
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 30  EETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNN 89
           E+  SS++ F WP +NY C+FCKR+F SAQALGGHMNVHRRDRA +  LPSWV D     
Sbjct: 9   EDDNSSSSGFLWPQRNYTCSFCKRQFNSAQALGGHMNVHRRDRAMLIQLPSWVFD----- 68

Query: 90  HNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNP 145
                C  PNPN     PS  +  SS   S  S + D   KK +    + NN +P
Sbjct: 69  -----CPNPNPNF----PSSASLSSSTATSSPSHNNDNNNKKMLPYPYYYNNSSP 109

[Close]
BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|567854041|ref|XP_006420140.1| (hypothetical protein CICLE_v10006961mg [Citrus clementina])

HSP 1 Score: 92.4 bits (228), Expect = 9.2e-16
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 1 

Query: 6   YMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHM 65
           Y N N+ N  +   QQ+QQ  Y +E      + F WP ++Y C+FCKREF+SAQALGGHM
Sbjct: 30  YNNQNSGNKMKDSCQQRQQQSYGEEYL----SGFSWPPRSYTCSFCKREFRSAQALGGHM 89

Query: 66  NVHRRDRARMRLLPSWVAD---NNNNNHNNYYC--------SYPNPNIANFS--PSCFNF 125
           NVHRRDRAR+R+ P    D   NNN N+  Y            PNPN  NFS  P    F
Sbjct: 90  NVHRRDRARLRISPPTPKDIIVNNNINNGQYPLLNLNLNPNPNPNPN-PNFSTPPLVSPF 149

Query: 126 RSSNKNSLSSSSQDQEIKKAIGSCSWNNNY---NPSLALHDQDQHHVDDEVLHVLKKKKK 185
            S +  S +SSS+ ++     G+ S  ++      S +   +     +++    L KK  
Sbjct: 150 SSFSSQSSASSSEIKKWSALTGALSPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGG 209

Query: 186 NLVNLELKMGNLGDDSSNEELDLELHL 197
            +V L+L++G + D  S E+LDLEL L
Sbjct: 210 EIVRLDLEIGVISD--SKEDLDLELRL 229

The following BLAST results are available for this feature:
BLAST of Lsi05G009970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUP_ARATH3.6e-1236.26Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1[more]
RBE_ARATH4.7e-1255.17Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE... [more]
TAC1_ARATH1.0e-0664.71Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1[more]
BLAST of Lsi05G009970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7I0_CUCSA1.1e-7178.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G392775 PE=4 SV=1[more]
A0A067JP76_JATCU3.8e-1646.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1[more]
V4S3L8_9ROSI6.4e-1638.65Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006961mg PE=4 SV=1[more]
M5VLU7_PRUPE2.1e-1437.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024794mg PE=4 SV=1[more]
A0A078FK64_BRANA4.6e-1457.35BnaC04g48270D protein OS=Brassica napus GN=BnaC04g48270D PE=4 SV=1[more]
BLAST of Lsi05G009970 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42410.11.3e-1535.43 zinc finger protein 11[more]
AT3G23130.12.0e-1336.26 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G06070.12.7e-1355.17 C2H2 and C2HC zinc fingers superfamily protein[more]
AT4G17810.12.5e-1144.74 C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G37740.12.3e-0936.97 zinc-finger protein 10[more]
BLAST of Lsi05G009970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109369|ref|XP_008454679.1|1.8e-7279.70PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo][more]
gi|778688627|ref|XP_011652797.1|1.5e-7178.82PREDICTED: uncharacterized protein LOC101216448 [Cucumis sativus][more]
gi|700202792|gb|KGN57925.1|1.5e-7178.82hypothetical protein Csa_3G392775 [Cucumis sativus][more]
gi|802788051|ref|XP_012092080.1|5.4e-1646.96PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas][more]
gi|567854041|ref|XP_006420140.1|9.2e-1638.65hypothetical protein CICLE_v10006961mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
biological_process GO:0008361 regulation of cell size
biological_process GO:0042127 regulation of cell proliferation
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0010160 formation of animal organ boundary
biological_process GO:0010093 specification of floral organ identity
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0044212 transcription regulatory region DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009970.1Lsi05G009970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 46..69
score: 5.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 48..68
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 46..73
score: 10
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 44..71
score: 7.
NoneNo IPR availableunknownCoilCoilcoord: 164..184
scor
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 34..194
score: 9.6
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 43..73
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G009970Cucsa.383800Cucumber (Gy14) v1cgylsiB621
Lsi05G009970CmaCh02G017600Cucurbita maxima (Rimu)cmalsiB585
Lsi05G009970CmoCh02G018050Cucurbita moschata (Rifu)cmolsiB565
Lsi05G009970CmoCh19G000840Cucurbita moschata (Rifu)cmolsiB470
Lsi05G009970Cla007566Watermelon (97103) v1lsiwmB383
Lsi05G009970Cla005998Watermelon (97103) v1lsiwmB356
Lsi05G009970MELO3C026785Melon (DHL92) v3.5.1lsimeB364
Lsi05G009970ClCG06G006780Watermelon (Charleston Gray)lsiwcgB344
Lsi05G009970ClCG07G000860Watermelon (Charleston Gray)lsiwcgB348
Lsi05G009970MELO3C006453.2Melon (DHL92) v3.6.1lsimedB398
Lsi05G009970Cla97C05G085440Watermelon (97103) v2lsiwmbB336
Lsi05G009970Cla97C07G129150Watermelon (97103) v2lsiwmbB346
Lsi05G009970Bhi05G000173Wax gourdlsiwgoB459
Lsi05G009970Cp4.1LG03g10150Cucurbita pepo (Zucchini)cpelsiB508
Lsi05G009970Cp4.1LG05g01460Cucurbita pepo (Zucchini)cpelsiB616
Lsi05G009970Cp4.1LG15g00600Cucurbita pepo (Zucchini)cpelsiB209
Lsi05G009970CsGy3G012420Cucumber (Gy14) v2cgyblsiB206
Lsi05G009970Carg08976Silver-seed gourdcarlsiB717
Lsi05G009970Carg16865Silver-seed gourdcarlsiB689
Lsi05G009970Carg16576Silver-seed gourdcarlsiB211
Lsi05G009970CsaV3_3G012410Cucumber (Chinese Long) v3cuclsiB234
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi05G009970Lsi09G012540Bottle gourd (USVL1VR-Ls)lsilsiB012
Lsi05G009970Lsi05G016940Bottle gourd (USVL1VR-Ls)lsilsiB157
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G009970Cucurbita maxima (Rimu)cmalsiB247
Lsi05G009970Cucurbita maxima (Rimu)cmalsiB486
Lsi05G009970Cucurbita maxima (Rimu)cmalsiB840
Lsi05G009970Cucurbita moschata (Rifu)cmolsiB235
Lsi05G009970Cucurbita pepo (Zucchini)cpelsiB269
Lsi05G009970Cucurbita pepo (Zucchini)cpelsiB716
Lsi05G009970Wild cucumber (PI 183967)cpilsiB127
Lsi05G009970Wild cucumber (PI 183967)cpilsiB213
Lsi05G009970Cucumber (Chinese Long) v2culsiB129
Lsi05G009970Cucumber (Chinese Long) v2culsiB215
Lsi05G009970Melon (DHL92) v3.5.1lsimeB382
Lsi05G009970Watermelon (97103) v1lsiwmB367
Lsi05G009970Cucumber (Gy14) v2cgyblsiB117
Lsi05G009970Melon (DHL92) v3.6.1lsimedB379
Lsi05G009970Silver-seed gourdcarlsiB879
Lsi05G009970Cucumber (Chinese Long) v3cuclsiB140
Lsi05G009970Watermelon (97103) v2lsiwmbB342