Lsi05G009970 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G009970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	C2H2 type zinc finger transcription factor family protein
Location	chr05 : 17422250 .. 17422840 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

mRNA sequence

ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

Coding sequence (CDS)

ATGGATGATGGAGCTTACATGAACAACAATACCAACAATGGGAAGCAGCAACAAGAACAACAACAACAACAATGGGGTTATGTAAAAGAAGAAACTTTTTCAAGCAATAATCAGTTTCAATGGCCAGCAAAAAATTATGGTTGTAATTTTTGCAAGAGGGAATTCAAATCAGCTCAAGCTCTTGGTGGGCATATGAATGTTCATAGAAGGGATAGAGCAAGAATGAGACTTTTGCCTTCTTGGGTGGCTGATAATAATAATAATAATCATAATAATTATTATTGTTCTTACCCTAACCCTAATATTGCTAATTTCTCACCATCTTGTTTCAATTTCAGATCATCAAATAAAAATTCTCTGTCTTCTTCCTCACAAGATCAAGAGATCAAGAAAGCAATTGGGAGTTGTTCATGGAACAATAATTACAACCCTTCATTAGCCCTTCATGATCAAGATCAACATCATGTTGATGATGAAGTTCTTCATGTGTTGAAGAAAAAGAAGAAAAATTTGGTTAATTTAGAGCTGAAGATGGGGAATTTGGGAGATGATTCTTCAAATGAAGAGCTGGATTTGGAGCTACATCTTTGA

Protein sequence

MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQHHVDDEVLHVLKKKKKNLVNLELKMGNLGDDSSNEELDLELHL

Homology

[Close]

BLAST of Lsi05G009970 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-12
Identity = 62/171 (36.26%), Postives = 90/171 (52.63%), Query Frame = 1


Query: 39  FQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYP 98
           F WP ++Y C+FCKREF+SAQALGGHMNVHRRDRAR+RL  S  + +  +        YP
Sbjct: 40  FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSP------PYP 99

Query: 99  NPN-----IANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQ 158
           NPN     +AN SP   +   +   +LS  S  +     I S S  + + P  A   +  
Sbjct: 100 NPNYSYSTMAN-SPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPENACKTKKS 159

Query: 159 HHVDD--EVLHVLKK------KKKNLVNLELKMGNLGDDSSNEELDLELHL 197
             + +  E      K      +   +++LEL++G + +  S ++LDLEL L
Sbjct: 160 SLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINE--SEQDLDLELRL 201

[Close]

BLAST of Lsi05G009970 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 25 WGYVKEETFSSNNQF------QWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          W + +E  F+S  ++       WP ++Y C+FC REFKSAQALGGHMNVHRRDRAR++
Sbjct: 28 WPFREERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLK 85

[Close]

BLAST of Lsi05G009970 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 43 AKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          +++Y C+FC R F +AQALGGHMN+HRRDRA++R
Sbjct: 32 SRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLR 65

[Close]

BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A0A0L7I0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G392775 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1


Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 33  MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 92

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 93  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 152

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 153 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 212

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 213 ELKMGSLGDASSNNEDLDLELHL 228

[Close]

BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A067JP76_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 30  EETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNN 89
           E+  SS++ F WP +NY C+FCKR+F SAQALGGHMNVHRRDRA +  LPSWV D     
Sbjct: 9   EDDNSSSSGFLWPQRNYTCSFCKRQFNSAQALGGHMNVHRRDRAMLIQLPSWVFD----- 68

Query: 90  HNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNP 145
                C  PNPN     PS  +  SS   S  S + D   KK +    + NN +P
Sbjct: 69  -----CPNPNPNF----PSSASLSSSTATSSPSHNNDNNNKKMLPYPYYYNNSSP 109

[Close]

BLAST of Lsi05G009970 vs. TrEMBL
Match: V4S3L8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006961mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.4e-16
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 1


Query: 6   YMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHM 65
           Y N N+ N  +   QQ+QQ  Y +E      + F WP ++Y C+FCKREF+SAQALGGHM
Sbjct: 30  YNNQNSGNKMKDSCQQRQQQSYGEEYL----SGFSWPPRSYTCSFCKREFRSAQALGGHM 89

Query: 66  NVHRRDRARMRLLPSWVAD---NNNNNHNNYYC--------SYPNPNIANFS--PSCFNF 125
           NVHRRDRAR+R+ P    D   NNN N+  Y            PNPN  NFS  P    F
Sbjct: 90  NVHRRDRARLRISPPTPKDIIVNNNINNGQYPLLNLNLNPNPNPNPN-PNFSTPPLVSPF 149

Query: 126 RSSNKNSLSSSSQDQEIKKAIGSCSWNNNY---NPSLALHDQDQHHVDDEVLHVLKKKKK 185
            S +  S +SSS+ ++     G+ S  ++      S +   +     +++    L KK  
Sbjct: 150 SSFSSQSSASSSEIKKWSALTGALSPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGG 209

Query: 186 NLVNLELKMGNLGDDSSNEELDLELHL 197
            +V L+L++G + D  S E+LDLEL L
Sbjct: 210 EIVRLDLEIGVISD--SKEDLDLELRL 229

[Close]

BLAST of Lsi05G009970 vs. TrEMBL
Match: M5VLU7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024794mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 69/186 (37.10%), Postives = 97/186 (52.15%), Query Frame = 1


Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADN---NNNNHNNYYCSY 100
           W AKNY C+FCKREF+SAQALGGHMNVHRRDRAR+RLLP  ++     +N N ++Y+   
Sbjct: 18  WAAKNYACSFCKREFRSAQALGGHMNVHRRDRARLRLLPPSLSSEICPHNPNPSSYFSPS 77

Query: 101 PNPNIANFS---------PSCFNFRSSNKNSL-SSSSQDQEIKKAIGSCSWNNNYNPSLA 160
            + + ++ S          SC +  S +  +L S++S     KK     +   N+ P+L 
Sbjct: 78  SSSSSSSLSSSKGLPHNYSSCHSLLSPSLRALMSATSSTDGNKKPKFKYNSPQNHVPNLI 137

Query: 161 LHDQDQHHVDDEVLHVLK-----------------KKKKNLVNLELKMGNLGDDSSNEEL 197
                +  VD E   +LK                 KK+ N++ L+L MG   D    EE+
Sbjct: 138 PKKGKRGAVDHEAGEILKGFAQKDLDDEFNKVDDLKKESNIIRLDLDMGFFKD--HKEEV 197

[Close]

BLAST of Lsi05G009970 vs. TrEMBL
Match: A0A078FK64_BRANA (BnaC04g48270D protein OS=Brassica napus GN=BnaC04g48270D PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-14
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNP 100
           WP KNY C+FC+R+F+SAQALGGHMNVHRRDRA++R +PSW+ +     H +     PNP
Sbjct: 43  WPPKNYTCSFCRRDFRSAQALGGHMNVHRRDRAKLRQIPSWLFE----PHQHVPVGNPNP 102

Query: 101 NIANFSPS 109
           N  + SPS
Sbjct: 103 NFGSSSPS 106

[Close]

BLAST of Lsi05G009970 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 62/175 (35.43%), Postives = 85/175 (48.57%), Query Frame = 1


Query: 41  WPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNP 100
           WP KNY C+FC+REF+SAQALGGHMNVHRRDRA++R +PSW+ +     H++   + PNP
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFE----PHHHTPIANPNP 103

Query: 101 NI----------ANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHD 160
           N           A+  PS  N RS      S+     +   + G    +   N S     
Sbjct: 104 NFSSSSSSSTTTAHLEPSLTNQRSKTTPFPSARFDLLDSTTSYGGLMMDREKNKSNVCSR 163

Query: 161 QDQHHVDDEVLHV---------LKKKKKNLVNLELKMGNLGDDSSNEELDLELHL 197
           + +    D    V         + KK   ++ LEL M      + N+ LDLEL L
Sbjct: 164 EIKKSAIDACHSVRCEISRGDLMNKKDDQVMGLELGMSL---RNPNQVLDLELRL 211

[Close]

BLAST of Lsi05G009970 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 62/171 (36.26%), Postives = 90/171 (52.63%), Query Frame = 1


Query: 39  FQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYP 98
           F WP ++Y C+FCKREF+SAQALGGHMNVHRRDRAR+RL  S  + +  +        YP
Sbjct: 40  FSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSP------PYP 99

Query: 99  NPN-----IANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNPSLALHDQDQ 158
           NPN     +AN SP   +   +   +LS  S  +     I S S  + + P  A   +  
Sbjct: 100 NPNYSYSTMAN-SPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPENACKTKKS 159

Query: 159 HHVDD--EVLHVLKK------KKKNLVNLELKMGNLGDDSSNEELDLELHL 197
             + +  E      K      +   +++LEL++G + +  S ++LDLEL L
Sbjct: 160 SLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINE--SEQDLDLELRL 201

[Close]

BLAST of Lsi05G009970 vs. TAIR10
Match: AT5G06070.1 (AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 25 WGYVKEETFSSNNQF------QWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMR 77
          W + +E  F+S  ++       WP ++Y C+FC REFKSAQALGGHMNVHRRDRAR++
Sbjct: 28 WPFREERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLK 85

[Close]

BLAST of Lsi05G009970 vs. TAIR10
Match: AT4G17810.1 (AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 1  MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
          M+ GA+M N     + + + +  +    +++T  + +   WP ++Y CNFC+REF+SAQA
Sbjct: 1  MNGGAWMWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQA 60

Query: 61 LGGHMNVHRRDRARMR 77
          LGGHMNVHRRDRA  R
Sbjct: 61 LGGHMNVHRRDRASSR 76

[Close]

BLAST of Lsi05G009970 vs. TAIR10
Match: AT2G37740.1 (AT2G37740.1 zinc-finger protein 10)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 15  KQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRAR 74
           K  +E   ++  + +++   S     WP ++Y C+FC+REFKSAQALGGHMNVHRRDRAR
Sbjct: 12  KSNKESSWEELAFAEDDAAGS----LWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRAR 71

Query: 75  MR------LLPSWVADNNNNNH---NNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSS 125
           ++      L P   +     +H   +N + +     + N  P+ F  + S    LSSSS
Sbjct: 72  LKQADDQYLFPKSSSSPEYPSHKDSDNIHETSCYTLVFNTKPNYFKTQHSCVIDLSSSS 126

[Close]

BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|659109369|ref|XP_008454679.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo])

HSP 1 Score: 280.8 bits (717), Expect = 1.8e-72
Identity = 161/202 (79.70%), Postives = 173/202 (85.64%), Query Frame = 1


Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYM+NNTNNGKQQQ+QQQQ+ GYVKE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 1   MDNGAYMSNNTNNGKQQQQQQQQR-GYVKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 60

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN  NFSPSCFNFR SSNKNS
Sbjct: 61  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFPNFSPSCFNFRSSSNKNS 120

Query: 121 LSSSSQDQEIKKAIGSCSWNNNYNP-SLALHDQDQHHV---DDEVLHVLKKKKKNLVNLE 180
           L SS QDQ+ KK IGSCSWNNNY P SL +   DQ HV    D+VLHV KKKKK+LVNLE
Sbjct: 121 LCSSLQDQD-KKEIGSCSWNNNYKPSSLFVPHDDQEHVGDDSDQVLHVFKKKKKSLVNLE 180

Query: 181 LKMGNLGDDSS-NEELDLELHL 197
           LKMG+LGD SS NE+LDLELHL
Sbjct: 181 LKMGSLGDASSNNEDLDLELHL 196

[Close]

BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|778688627|ref|XP_011652797.1| (PREDICTED: uncharacterized protein LOC101216448 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1


Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 127 MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 186

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 187 LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 246

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 247 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 306

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 307 ELKMGSLGDASSNNEDLDLELHL 322

[Close]

BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|700202792|gb|KGN57925.1| (hypothetical protein Csa_3G392775 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 1


Query: 1   MDDGAYMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQA 60
           MD+GAYMNNNTNNGKQQQ+QQQ+  GY KE TFSSN +FQWPAKNYGCNFCKREFKSAQA
Sbjct: 33  MDNGAYMNNNTNNGKQQQQQQQR--GYAKEGTFSSN-EFQWPAKNYGCNFCKREFKSAQA 92

Query: 61  LGGHMNVHRRDRARMRLLPSWVADNNNNNHNNYYCSYPNPNIANFSPSCFNFR-SSNKNS 120
           LGGHMNVHRRDRARMRLLPSWV+DNN N  NNYY S PNPN +NFSPSCFNFR SSNKNS
Sbjct: 93  LGGHMNVHRRDRARMRLLPSWVSDNNYN--NNYY-SCPNPNFSNFSPSCFNFRSSSNKNS 152

Query: 121 LSSSSQDQEIKKAIGSCSWNNN-YNP-SLALHDQDQHHVD---DEVLHVLKKKKKNLVNL 180
           L SS QDQ+ KK IGSCSWNNN Y P SL +   DQ HVD   D+VLHV KKKKK +VNL
Sbjct: 153 LCSSLQDQD-KKEIGSCSWNNNIYKPSSLVVPHDDQEHVDDDADQVLHVFKKKKKGMVNL 212

Query: 181 ELKMGNLGDDSS-NEELDLELHL 197
           ELKMG+LGD SS NE+LDLELHL
Sbjct: 213 ELKMGSLGDASSNNEDLDLELHL 228

[Close]

BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|802788051|ref|XP_012092080.1| (PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas])

HSP 1 Score: 93.2 bits (230), Expect = 5.4e-16
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 30  EETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHMNVHRRDRARMRLLPSWVADNNNNN 89
           E+  SS++ F WP +NY C+FCKR+F SAQALGGHMNVHRRDRA +  LPSWV D     
Sbjct: 9   EDDNSSSSGFLWPQRNYTCSFCKRQFNSAQALGGHMNVHRRDRAMLIQLPSWVFD----- 68

Query: 90  HNNYYCSYPNPNIANFSPSCFNFRSSNKNSLSSSSQDQEIKKAIGSCSWNNNYNP 145
                C  PNPN     PS  +  SS   S  S + D   KK +    + NN +P
Sbjct: 69  -----CPNPNPNF----PSSASLSSSTATSSPSHNNDNNNKKMLPYPYYYNNSSP 109

[Close]

BLAST of Lsi05G009970 vs. NCBI nr
Match: gi|567854041|ref|XP_006420140.1| (hypothetical protein CICLE_v10006961mg [Citrus clementina])

HSP 1 Score: 92.4 bits (228), Expect = 9.2e-16
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 1


Query: 6   YMNNNTNNGKQQQEQQQQQWGYVKEETFSSNNQFQWPAKNYGCNFCKREFKSAQALGGHM 65
           Y N N+ N  +   QQ+QQ  Y +E      + F WP ++Y C+FCKREF+SAQALGGHM
Sbjct: 30  YNNQNSGNKMKDSCQQRQQQSYGEEYL----SGFSWPPRSYTCSFCKREFRSAQALGGHM 89

Query: 66  NVHRRDRARMRLLPSWVAD---NNNNNHNNYYC--------SYPNPNIANFS--PSCFNF 125
           NVHRRDRAR+R+ P    D   NNN N+  Y            PNPN  NFS  P    F
Sbjct: 90  NVHRRDRARLRISPPTPKDIIVNNNINNGQYPLLNLNLNPNPNPNPN-PNFSTPPLVSPF 149

Query: 126 RSSNKNSLSSSSQDQEIKKAIGSCSWNNNY---NPSLALHDQDQHHVDDEVLHVLKKKKK 185
            S +  S +SSS+ ++     G+ S  ++      S +   +     +++    L KK  
Sbjct: 150 SSFSSQSSASSSEIKKWSALTGALSPKDSVKKNEKSFSGAKEFGGFTEEDDGFKLSKKGG 209

Query: 186 NLVNLELKMGNLGDDSSNEELDLELHL 197
            +V L+L++G + D  S E+LDLEL L
Sbjct: 210 EIVRLDLEIGVISD--SKEDLDLELRL 229

The following BLAST results are available for this feature:

BLAST of Lsi05G009970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUP_ARATH	3.6e-12	36.26	Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1	[more]
RBE_ARATH	4.7e-12	55.17	Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE...	[more]
TAC1_ARATH	1.0e-06	64.71	Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1	[more]

BLAST of Lsi05G009970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7I0_CUCSA	1.1e-71	78.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G392775 PE=4 SV=1	[more]
A0A067JP76_JATCU	3.8e-16	46.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1	[more]
V4S3L8_9ROSI	6.4e-16	38.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006961mg PE=4 SV=1	[more]
M5VLU7_PRUPE	2.1e-14	37.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb024794mg PE=4 SV=1	[more]
A0A078FK64_BRANA	4.6e-14	57.35	BnaC04g48270D protein OS=Brassica napus GN=BnaC04g48270D PE=4 SV=1	[more]

BLAST of Lsi05G009970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42410.1	1.3e-15	35.43	zinc finger protein 11	[more]
AT3G23130.1	2.0e-13	36.26	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G06070.1	2.7e-13	55.17	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT4G17810.1	2.5e-11	44.74	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G37740.1	2.3e-09	36.97	zinc-finger protein 10	[more]

BLAST of Lsi05G009970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109369\|ref\|XP_008454679.1\|	1.8e-72	79.70	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]	[more]
gi\|778688627\|ref\|XP_011652797.1\|	1.5e-71	78.82	PREDICTED: uncharacterized protein LOC101216448 [Cucumis sativus]	[more]
gi\|700202792\|gb\|KGN57925.1\|	1.5e-71	78.82	hypothetical protein Csa_3G392775 [Cucumis sativus]	[more]
gi\|802788051\|ref\|XP_012092080.1\|	5.4e-16	46.96	PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]	[more]
gi\|567854041\|ref\|XP_006420140.1\|	9.2e-16	38.65	hypothetical protein CICLE_v10006961mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0042127	regulation of cell proliferation
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0010160	formation of animal organ boundary
biological_process	GO:0010093	specification of floral organ identity
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009970.1	Lsi05G009970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 46..69 score: 5.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 48..68 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 46..73 score: 10
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 44..71 score: 7.
None	No IPR available	unknown	Coil	Coil	coord: 164..184 scor
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 34..194 score: 9.6
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 43..73 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G009970	Cucsa.383800	Cucumber (Gy14) v1	cgylsiB621
Lsi05G009970	CmaCh02G017600	Cucurbita maxima (Rimu)	cmalsiB585
Lsi05G009970	CmoCh02G018050	Cucurbita moschata (Rifu)	cmolsiB565
Lsi05G009970	CmoCh19G000840	Cucurbita moschata (Rifu)	cmolsiB470
Lsi05G009970	Cla007566	Watermelon (97103) v1	lsiwmB383
Lsi05G009970	Cla005998	Watermelon (97103) v1	lsiwmB356
Lsi05G009970	MELO3C026785	Melon (DHL92) v3.5.1	lsimeB364
Lsi05G009970	ClCG06G006780	Watermelon (Charleston Gray)	lsiwcgB344
Lsi05G009970	ClCG07G000860	Watermelon (Charleston Gray)	lsiwcgB348
Lsi05G009970	MELO3C006453.2	Melon (DHL92) v3.6.1	lsimedB398
Lsi05G009970	Cla97C05G085440	Watermelon (97103) v2	lsiwmbB336
Lsi05G009970	Cla97C07G129150	Watermelon (97103) v2	lsiwmbB346
Lsi05G009970	Bhi05G000173	Wax gourd	lsiwgoB459
Lsi05G009970	Cp4.1LG03g10150	Cucurbita pepo (Zucchini)	cpelsiB508
Lsi05G009970	Cp4.1LG05g01460	Cucurbita pepo (Zucchini)	cpelsiB616
Lsi05G009970	Cp4.1LG15g00600	Cucurbita pepo (Zucchini)	cpelsiB209
Lsi05G009970	CsGy3G012420	Cucumber (Gy14) v2	cgyblsiB206
Lsi05G009970	Carg08976	Silver-seed gourd	carlsiB717
Lsi05G009970	Carg16865	Silver-seed gourd	carlsiB689
Lsi05G009970	Carg16576	Silver-seed gourd	carlsiB211
Lsi05G009970	CsaV3_3G012410	Cucumber (Chinese Long) v3	cuclsiB234

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi05G009970	Lsi09G012540	Bottle gourd (USVL1VR-Ls)	lsilsiB012
Lsi05G009970	Lsi05G016940	Bottle gourd (USVL1VR-Ls)	lsilsiB157

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G009970	Melon (DHL92) v3.6.1	lsimedB379
Lsi05G009970	Silver-seed gourd	carlsiB879
Lsi05G009970	Cucumber (Chinese Long) v3	cuclsiB140
Lsi05G009970	Watermelon (97103) v2	lsiwmbB342
Lsi05G009970	Cucurbita maxima (Rimu)	cmalsiB247
Lsi05G009970	Cucurbita maxima (Rimu)	cmalsiB486
Lsi05G009970	Cucurbita maxima (Rimu)	cmalsiB840
Lsi05G009970	Cucurbita moschata (Rifu)	cmolsiB235
Lsi05G009970	Cucurbita pepo (Zucchini)	cpelsiB269
Lsi05G009970	Cucurbita pepo (Zucchini)	cpelsiB716
Lsi05G009970	Wild cucumber (PI 183967)	cpilsiB127
Lsi05G009970	Wild cucumber (PI 183967)	cpilsiB213
Lsi05G009970	Cucumber (Chinese Long) v2	culsiB129
Lsi05G009970	Cucumber (Chinese Long) v2	culsiB215
Lsi05G009970	Melon (DHL92) v3.5.1	lsimeB382
Lsi05G009970	Watermelon (97103) v1	lsiwmB367
Lsi05G009970	Cucumber (Gy14) v2	cgyblsiB117