Lsi09G012540 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G012540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionC2H2 type zinc finger transcription factor family protein
Locationchr09 : 20209899 .. 20210417 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGCCGCAGCCCACAAGAAGAGGTTAGATTTATAACCAAACCCAAAATAAAGTCACAACCTAAAGCTAAAGCCTCAAGCAAACATAACAACAAAAGAGAAGGAAATGAAGAAGATGAAGAAGAAAAAGAGATTATTGTTGGATTTCCATGGGCTTCTTCAAGAGCTTATACATGTGGTTTTTGCAAAAGACAATTTCAATCTGCACAAGCTCTTGGTGGCCACATGAATGTTCATCGACGAGACCGAGCGAAGCTCCGCCGAAGATCTCCACCGTTGTTGGATTCAACTACTCATGATCATCATCAAGATTTTCATGGATCCTCATCTCAACCCATTAAGTTTTTTAAACTTTATGATTTCTCAAGCTTTCATGGTGAAGAAGCTGATGAATCTACAGATGGAGGATGTAAGATTTGGAAGAAGGTTAACAAGTTTGTGAAGAAGAAGAAGGAGGCTGTTAATTTGCTTGGTAGTTCTAATGACATAGATTTGGAACTTAGATTAGGGTTTTAA

mRNA sequence

ATGAGCAGCCGCAGCCCACAAGAAGAGGTTAGATTTATAACCAAACCCAAAATAAAGTCACAACCTAAAGCTAAAGCCTCAAGCAAACATAACAACAAAAGAGAAGGAAATGAAGAAGATGAAGAAGAAAAAGAGATTATTGTTGGATTTCCATGGGCTTCTTCAAGAGCTTATACATGTGGTTTTTGCAAAAGACAATTTCAATCTGCACAAGCTCTTGGTGGCCACATGAATGTTCATCGACGAGACCGAGCGAAGCTCCGCCGAAGATCTCCACCGTTGTTGGATTCAACTACTCATGATCATCATCAAGATTTTCATGGATCCTCATCTCAACCCATTAAGTTTTTTAAACTTTATGATTTCTCAAGCTTTCATGGTGAAGAAGCTGATGAATCTACAGATGGAGGATGTAAGATTTGGAAGAAGGTTAACAAGTTTGTGAAGAAGAAGAAGGAGGCTGTTAATTTGCTTGGTAGTTCTAATGACATAGATTTGGAACTTAGATTAGGGTTTTAA

Coding sequence (CDS)

ATGAGCAGCCGCAGCCCACAAGAAGAGGTTAGATTTATAACCAAACCCAAAATAAAGTCACAACCTAAAGCTAAAGCCTCAAGCAAACATAACAACAAAAGAGAAGGAAATGAAGAAGATGAAGAAGAAAAAGAGATTATTGTTGGATTTCCATGGGCTTCTTCAAGAGCTTATACATGTGGTTTTTGCAAAAGACAATTTCAATCTGCACAAGCTCTTGGTGGCCACATGAATGTTCATCGACGAGACCGAGCGAAGCTCCGCCGAAGATCTCCACCGTTGTTGGATTCAACTACTCATGATCATCATCAAGATTTTCATGGATCCTCATCTCAACCCATTAAGTTTTTTAAACTTTATGATTTCTCAAGCTTTCATGGTGAAGAAGCTGATGAATCTACAGATGGAGGATGTAAGATTTGGAAGAAGGTTAACAAGTTTGTGAAGAAGAAGAAGGAGGCTGTTAATTTGCTTGGTAGTTCTAATGACATAGATTTGGAACTTAGATTAGGGTTTTAA

Protein sequence

MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
Homology
[Close]
BLAST of Lsi09G012540 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 41 EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST 99
          +++ + ++GF W   R+YTC FCKR+F+SAQALGGHMNVHRRDRA+LR +  P   ST
Sbjct: 31 QQDHDYLLGFSWPP-RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSST 87

[Close]
BLAST of Lsi09G012540 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 56  RAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRR--SPPLLDSTT 100
           R+Y+C FC R+F+SAQALGGHMNVHRRDRA+L+++  SP   D  T
Sbjct: 53  RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSPSSTDQAT 98

[Close]
BLAST of Lsi09G012540 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-09
Identity = 48/138 (34.78%), Postives = 69/138 (50.00%), Query Frame = 1 

Query: 55  SRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPI 114
           SR+Y C FC R F +AQALGGHMN+HRRDRAKLR++   L++    D   +   S +  +
Sbjct: 32  SRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQK---LMEDNKDDVVAE---SDASEV 91

Query: 115 KFFKLYDFSSFHGE-----EADESTDGGCKIWKKVNKFVKKKKEAVN---------LLGS 172
               L +     GE     + D+  D      +K+  +V++ K   N         + GS
Sbjct: 92  VSLDLNEQQQQQGEALTCDDHDQYVDNDISPKQKLEFWVQESKLDTNDHGKVTEASIDGS 151

[Close]
BLAST of Lsi09G012540 vs. Swiss-Prot
Match: KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 

Query: 53 ASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRR------RSPPLLD 97
          AS R + C +C R+F ++QALGGH N H+R+RA  RR       SPP+LD
Sbjct: 33 ASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRNLGVLANSPPILD 82

[Close]
BLAST of Lsi09G012540 vs. TrEMBL
Match: A0A0A0LNQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190780 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.5e-66
Identity = 135/172 (78.49%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 2   SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTC 61
           SS    +E+R ITKPK+K Q KAKAS KHNNKREGN+E+EEEKEIIV FPWASSRA YTC
Sbjct: 13  SSSQGVQELRIITKPKMKPQLKAKASRKHNNKREGNQEEEEEKEIIVEFPWASSRASYTC 72

Query: 62  GFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLY 121
           GFCKRQFQSAQALGGHMNVHRRDRAKLRR S PL  +T  DHH DFHGSSSQPIKF KLY
Sbjct: 73  GFCKRQFQSAQALGGHMNVHRRDRAKLRR-SLPLDSATNDDHHHDFHGSSSQPIKFLKLY 132

Query: 122 DFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF 173
           DFSSFHGE+AD+ +DGGC+IWKKVNKFVKK+     LL +SNDIDLELRLGF
Sbjct: 133 DFSSFHGEQADDQSDGGCQIWKKVNKFVKKE---TALLATSNDIDLELRLGF 180

[Close]
BLAST of Lsi09G012540 vs. TrEMBL
Match: A0A0B0PFV2_GOSAR (Transcriptional regulator SUPERMAN-like protein OS=Gossypium arboreum GN=F383_29846 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 65/154 (42.21%), Postives = 81/154 (52.60%), Query Frame = 1 

Query: 43  EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDH 102
           E++ + GF W   R+YTC FC+R F+SAQALGGHMNVHRRD+A+LR+  PP+        
Sbjct: 8   EEDYLSGFSWPP-RSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPPPM-------- 67

Query: 103 HQDFHGSSSQPIKFFKLY---------DFSSFHGEE----ADESTDGGCKIWKKVNKFVK 162
             D H SS  P +  K           D +S  G +      E  D GCK     NKF+K
Sbjct: 68  --DHHVSSPLPCEMKKWLVNETVVDSTDSTSMKGAKPLSGVKEFKDYGCK-----NKFMK 127

Query: 163 KKKEAVNL-----------LGSSNDIDLELRLGF 173
           KKK  VNL             S  D+DLELRLG+
Sbjct: 128 KKKNNVNLDLDLDLEIGVVSDSKEDLDLELRLGY 145

[Close]
BLAST of Lsi09G012540 vs. TrEMBL
Match: A0A0D2N7Z4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G047800 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 67/170 (39.41%), Postives = 88/170 (51.76%), Query Frame = 1 

Query: 43  EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDH 102
           E++ + GF W   R+YTC FC+R F+SAQALGGHMNVHRRD+A+LR+  PP+      DH
Sbjct: 8   EEDYLSGFSWPP-RSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPPPM------DH 67

Query: 103 H-QDFHGSSSQPIKFFKLYDFSS---------------FHGEEADESTDG---------- 162
           H Q    + +  + F    +FSS                  E   +STD           
Sbjct: 68  HGQSPFLNLNLNLNFNPNPNFSSSSLVSSPLPCEMKKRLVNETVVDSTDSTSMKGAKPLF 127

Query: 163 GCKIWKKV---NKFVKKKKEAVNL-LG----------SSNDIDLELRLGF 173
           G K +K     NKF+KKKK+ V+L LG          S  D+DLELRLG+
Sbjct: 128 GVKEFKDYGCNNKFMKKKKKNVSLDLGLDLEMGVGSDSKEDLDLELRLGY 170

[Close]
BLAST of Lsi09G012540 vs. TrEMBL
Match: A0A0B2RYH3_GLYSO (Transcriptional regulator SUPERMAN OS=Glycine soja GN=glysoja_001623 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1 

Query: 26  ASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRA 85
           A+  +NN    N    ++ + + GFPW   R+YTC FC+++F+SAQALGGHMNVHRRDRA
Sbjct: 34  ANCYNNNNIHSNNNIADQNDYVNGFPWPP-RSYTCSFCRKEFRSAQALGGHMNVHRRDRA 93

Query: 86  KLRRRSPPLLDSTTHDHHQ 105
           +LR+ SPP    T H+ HQ
Sbjct: 94  RLRQSSPP----THHEVHQ 107

[Close]
BLAST of Lsi09G012540 vs. TrEMBL
Match: K7M271_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G269400 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1 

Query: 26  ASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRA 85
           A+  +NN    N    ++ + + GFPW   R+YTC FC+++F+SAQALGGHMNVHRRDRA
Sbjct: 27  ANCYNNNNIHSNNNIADQNDYVNGFPWPP-RSYTCSFCRKEFRSAQALGGHMNVHRRDRA 86

Query: 86  KLRRRSPPLLDSTTHDHHQ 105
           +LR+ SPP    T H+ HQ
Sbjct: 87  RLRQSSPP----THHEVHQ 100

[Close]
BLAST of Lsi09G012540 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-14
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 41 EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST 99
          +++ + ++GF W   R+YTC FCKR+F+SAQALGGHMNVHRRDRA+LR +  P   ST
Sbjct: 31 QQDHDYLLGFSWPP-RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSST 87

[Close]
BLAST of Lsi09G012540 vs. TAIR10
Match: AT2G37740.1 (AT2G37740.1 zinc-finger protein 10)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 29  KHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLR 88
           K +NK    EE    ++   G  W   R+YTC FC+R+F+SAQALGGHMNVHRRDRA+L+
Sbjct: 11  KKSNKESSWEELAFAEDDAAGSLWPP-RSYTCSFCRREFKSAQALGGHMNVHRRDRARLK 70

Query: 89  RRS-----PPLLDSTTHDHHQD 106
           +       P    S  +  H+D
Sbjct: 71  QADDQYLFPKSSSSPEYPSHKD 91

[Close]
BLAST of Lsi09G012540 vs. TAIR10
Match: AT4G17810.1 (AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-11
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 32  NKREGNEEDEEEKEI----------IVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHR 91
           NK E  E+D+E  E+          I G  W   R+YTC FC+R+F+SAQALGGHMNVHR
Sbjct: 11  NKIEELEDDDESWEVKAFEQDTKGNISGTTWPP-RSYTCNFCRREFRSAQALGGHMNVHR 70

Query: 92  RDRAKLRRRSPPLLDSTTHDHH 104
           RDRA  R      + +     H
Sbjct: 71  RDRASSRAHQGSTVAAAARSGH 91

[Close]
BLAST of Lsi09G012540 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-11
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1 

Query: 24  AKASSKHNNKREGNEEDEEEKEIIVG---------FPWASSRAYTCGFCKRQFQSAQALG 83
           A  S++   + E  E+   +  +I+           PW     YTC FC+R+F+SAQALG
Sbjct: 7   ASFSNRDKTQEEEGEDGNGDNRVIMNHYKNYEAGLIPWPPKN-YTCSFCRREFRSAQALG 66

Query: 84  GHMNVHRRDRAKLRRRSPPLLDSTTH----DHHQDFHGSSS 112
           GHMNVHRRDRAKLR+    L +   H    + + +F  SSS
Sbjct: 67  GHMNVHRRDRAKLRQIPSWLFEPHHHTPIANPNPNFSSSSS 106

[Close]
BLAST of Lsi09G012540 vs. TAIR10
Match: AT3G53820.1 (AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-11
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1 

Query: 50  FPWASSRA--YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFH 109
           + W+ S+A  Y C FC+R F +AQALGGHMN+HR+DRAKLR+ +    DS         +
Sbjct: 11  YSWSGSQARPYICEFCERGFSNAQALGGHMNIHRKDRAKLRQANLKEEDSEDAICTTSRN 70

Query: 110 GSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLE 169
               + I+     D      +  D+ ++ G    +K N  + +K     L  S++ IDLE
Sbjct: 71  RFGQELIELPFFVDTVGPRRKGEDDKSEKGLGDEEKKNMRILQKA----LSQSADVIDLE 130

Query: 170 LRLG 172
           LRLG
Sbjct: 131 LRLG 130

[Close]
BLAST of Lsi09G012540 vs. NCBI nr
Match: gi|778674150|ref|XP_011650145.1| (PREDICTED: zinc finger protein 3-like [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 5.0e-66
Identity = 135/172 (78.49%), Postives = 147/172 (85.47%), Query Frame = 1 

Query: 2   SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTC 61
           SS    +E+R ITKPK+K Q KAKAS KHNNKREGN+E+EEEKEIIV FPWASSRA YTC
Sbjct: 13  SSSQGVQELRIITKPKMKPQLKAKASRKHNNKREGNQEEEEEKEIIVEFPWASSRASYTC 72

Query: 62  GFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLY 121
           GFCKRQFQSAQALGGHMNVHRRDRAKLRR S PL  +T  DHH DFHGSSSQPIKF KLY
Sbjct: 73  GFCKRQFQSAQALGGHMNVHRRDRAKLRR-SLPLDSATNDDHHHDFHGSSSQPIKFLKLY 132

Query: 122 DFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF 173
           DFSSFHGE+AD+ +DGGC+IWKKVNKFVKK+     LL +SNDIDLELRLGF
Sbjct: 133 DFSSFHGEQADDQSDGGCQIWKKVNKFVKKE---TALLATSNDIDLELRLGF 180

[Close]
BLAST of Lsi09G012540 vs. NCBI nr
Match: gi|659130500|ref|XP_008465205.1| (PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 136/172 (79.07%), Postives = 148/172 (86.05%), Query Frame = 1 

Query: 2   SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTC 61
           SS    +E+R ITKPK+K Q KAKASSKH+NKREG +E+EE EKEIIV FPWASSRAYTC
Sbjct: 13  SSSHGGQELRIITKPKMKPQLKAKASSKHSNKREGKQEEEEKEKEIIVEFPWASSRAYTC 72

Query: 62  GFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLY 121
           GFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  DHH DF GSSSQPIKF KLY
Sbjct: 73  GFCKRQFQSAQALGGHMNVHRRDRAKL-RRSLPLDSATNDDHHHDFLGSSSQPIKFLKLY 132

Query: 122 DFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF 173
           DFSSFHGE+AD+ +DGGCKIWKKVNKFVKKK+ A  LL +SNDIDLELRLGF
Sbjct: 133 DFSSFHGEQADDQSDGGCKIWKKVNKFVKKKETA--LLATSNDIDLELRLGF 181

[Close]
BLAST of Lsi09G012540 vs. NCBI nr
Match: gi|728844344|gb|KHG23787.1| (Transcriptional regulator SUPERMAN -like protein [Gossypium arboreum])

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-17
Identity = 65/154 (42.21%), Postives = 81/154 (52.60%), Query Frame = 1 

Query: 43  EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDH 102
           E++ + GF W   R+YTC FC+R F+SAQALGGHMNVHRRD+A+LR+  PP+        
Sbjct: 8   EEDYLSGFSWPP-RSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPPPM-------- 67

Query: 103 HQDFHGSSSQPIKFFKLY---------DFSSFHGEE----ADESTDGGCKIWKKVNKFVK 162
             D H SS  P +  K           D +S  G +      E  D GCK     NKF+K
Sbjct: 68  --DHHVSSPLPCEMKKWLVNETVVDSTDSTSMKGAKPLSGVKEFKDYGCK-----NKFMK 127

Query: 163 KKKEAVNL-----------LGSSNDIDLELRLGF 173
           KKK  VNL             S  D+DLELRLG+
Sbjct: 128 KKKNNVNLDLDLDLEIGVVSDSKEDLDLELRLGY 145

[Close]
BLAST of Lsi09G012540 vs. NCBI nr
Match: gi|823164009|ref|XP_012481951.1| (PREDICTED: transcriptional regulator SUPERMAN-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 65/154 (42.21%), Postives = 83/154 (53.90%), Query Frame = 1 

Query: 43  EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDH 102
           E++ + GF W   R+YTC FC+R F+SAQALGGHMNVHRRD+A+LR+  PP+        
Sbjct: 8   EEDYLSGFSWPP-RSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPPPM-------- 67

Query: 103 HQDFHGSSSQPIKFFKLY---------DFSSFHGEE----ADESTDGGCKIWKKVNKFVK 162
             D H SS  P +  K           D +S  G +      E  D GC      NKF+K
Sbjct: 68  --DHHVSSPLPCEMKKRLVNETVVDSTDSTSMKGAKPLFGVKEFKDYGCN-----NKFMK 127

Query: 163 KKKEAVNL-LG----------SSNDIDLELRLGF 173
           KKK+ V+L LG          S  D+DLELRLG+
Sbjct: 128 KKKKNVSLDLGLDLEMGVGSDSKEDLDLELRLGY 145

[Close]
BLAST of Lsi09G012540 vs. NCBI nr
Match: gi|823164007|ref|XP_012481950.1| (PREDICTED: transcriptional regulator SUPERMAN-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-14
Identity = 67/170 (39.41%), Postives = 88/170 (51.76%), Query Frame = 1 

Query: 43  EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDH 102
           E++ + GF W   R+YTC FC+R F+SAQALGGHMNVHRRD+A+LR+  PP+      DH
Sbjct: 8   EEDYLSGFSWPP-RSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPPPM------DH 67

Query: 103 H-QDFHGSSSQPIKFFKLYDFSS---------------FHGEEADESTDG---------- 162
           H Q    + +  + F    +FSS                  E   +STD           
Sbjct: 68  HGQSPFLNLNLNLNFNPNPNFSSSSLVSSPLPCEMKKRLVNETVVDSTDSTSMKGAKPLF 127

Query: 163 GCKIWKKV---NKFVKKKKEAVNL-LG----------SSNDIDLELRLGF 173
           G K +K     NKF+KKKK+ V+L LG          S  D+DLELRLG+
Sbjct: 128 GVKEFKDYGCNNKFMKKKKKNVSLDLGLDLEMGVGSDSKEDLDLELRLGY 170

The following BLAST results are available for this feature:
BLAST of Lsi09G012540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUP_ARATH2.2e-1358.62Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1[more]
RBE_ARATH1.9e-0963.04Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE... [more]
TAC1_ARATH4.3e-0934.78Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1[more]
KNU_ARATH1.2e-0650.00Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1[more]
BLAST of Lsi09G012540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNQ1_CUCSA3.5e-6678.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190780 PE=4 SV=1[more]
A0A0B0PFV2_GOSAR3.0e-1742.21Transcriptional regulator SUPERMAN-like protein OS=Gossypium arboreum GN=F383_29... [more]
A0A0D2N7Z4_GOSRA5.3e-1439.41Uncharacterized protein OS=Gossypium raimondii GN=B456_005G047800 PE=4 SV=1[more]
A0A0B2RYH3_GLYSO2.6e-1351.90Transcriptional regulator SUPERMAN OS=Glycine soja GN=glysoja_001623 PE=4 SV=1[more]
K7M271_SOYBN2.6e-1351.90Uncharacterized protein OS=Glycine max GN=GLYMA_13G269400 PE=4 SV=1[more]
BLAST of Lsi09G012540 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23130.11.2e-1458.62 C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G37740.13.7e-1145.12 zinc-finger protein 10[more]
AT4G17810.14.9e-1145.12 C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G42410.18.3e-1139.60 zinc finger protein 11[more]
AT3G53820.18.3e-1136.29 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Lsi09G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674150|ref|XP_011650145.1|5.0e-6678.49PREDICTED: zinc finger protein 3-like [Cucumis sativus][more]
gi|659130500|ref|XP_008465205.1|1.1e-6579.07PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo][more]
gi|728844344|gb|KHG23787.1|4.3e-1742.21Transcriptional regulator SUPERMAN -like protein [Gossypium arboreum][more]
gi|823164009|ref|XP_012481951.1|2.8e-1642.21PREDICTED: transcriptional regulator SUPERMAN-like isoform X2 [Gossypium raimond... [more]
gi|823164007|ref|XP_012481950.1|7.6e-1439.41PREDICTED: transcriptional regulator SUPERMAN-like isoform X1 [Gossypium raimond... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010160 formation of animal organ boundary
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0042127 regulation of cell proliferation
biological_process GO:0008361 regulation of cell size
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0044212 transcription regulatory region DNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G012540.1Lsi09G012540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 58..81
score: 7.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 60..80
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 58..85
score: 10
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 7..104
score: 7.5
NoneNo IPR availablePANTHERPTHR26374:SF192C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN-RELATEDcoord: 7..104
score: 7.5
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 55..84
score: 1.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G012540Csa2G190780Cucumber (Chinese Long) v2culsiB087
Lsi09G012540CSPI02G10570Wild cucumber (PI 183967)cpilsiB085
Lsi09G012540Cucsa.383800Cucumber (Gy14) v1cgylsiB619
Lsi09G012540CmaCh08G010990Cucurbita maxima (Rimu)cmalsiB811
Lsi09G012540Cla007566Watermelon (97103) v1lsiwmB040
Lsi09G012540MELO3C026785Melon (DHL92) v3.5.1lsimeB025
Lsi09G012540ClCG06G006780Watermelon (Charleston Gray)lsiwcgB029
Lsi09G012540MELO3C026785.2Melon (DHL92) v3.6.1lsimedB027
Lsi09G012540MELO3C006453.2Melon (DHL92) v3.6.1lsimedB032
Lsi09G012540Cla97C05G085440Watermelon (97103) v2lsiwmbB015
Lsi09G012540Cla97C06G116390Watermelon (97103) v2lsiwmbB026
Lsi09G012540Bhi12G001460Wax gourdlsiwgoB007
Lsi09G012540Cp4.1LG15g00600Cucurbita pepo (Zucchini)cpelsiB193
Lsi09G012540Cp4.1LG17g01800Cucurbita pepo (Zucchini)cpelsiB254
Lsi09G012540Cp4.1LG03g10150Cucurbita pepo (Zucchini)cpelsiB484
Lsi09G012540CsGy2G010580Cucumber (Gy14) v2cgyblsiB080
Lsi09G012540CsGy3G012420Cucumber (Gy14) v2cgyblsiB136
Lsi09G012540Carg10948Silver-seed gourdcarlsiB981
Lsi09G012540Carg16576Silver-seed gourdcarlsiB209
Lsi09G012540CsaV3_3G012410Cucumber (Chinese Long) v3cuclsiB163
Lsi09G012540CsaV3_2G012990Cucumber (Chinese Long) v3cuclsiB098
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi09G012540Lsi05G016940Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi09G012540Lsi05G009970Bottle gourd (USVL1VR-Ls)lsilsiB012
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G012540Silver-seed gourdcarlsiB204
Lsi09G012540Silver-seed gourdcarlsiB687
Lsi09G012540Silver-seed gourdcarlsiB876
Lsi09G012540Watermelon (97103) v2lsiwmbB029
Lsi09G012540Cucumber (Gy14) v1cgylsiB412
Lsi09G012540Cucurbita maxima (Rimu)cmalsiB225
Lsi09G012540Cucurbita maxima (Rimu)cmalsiB331
Lsi09G012540Cucurbita maxima (Rimu)cmalsiB464
Lsi09G012540Cucurbita maxima (Rimu)cmalsiB741
Lsi09G012540Cucurbita moschata (Rifu)cmolsiB142
Lsi09G012540Cucurbita moschata (Rifu)cmolsiB213
Lsi09G012540Cucurbita moschata (Rifu)cmolsiB320
Lsi09G012540Cucurbita moschata (Rifu)cmolsiB733
Lsi09G012540Cucurbita moschata (Rifu)cmolsiB797
Lsi09G012540Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G012540Cucurbita pepo (Zucchini)cpelsiB584
Lsi09G012540Cucurbita pepo (Zucchini)cpelsiB697
Lsi09G012540Wild cucumber (PI 183967)cpilsiB149
Lsi09G012540Cucumber (Chinese Long) v2culsiB150
Lsi09G012540Watermelon (Charleston Gray)lsiwcgB011
Lsi09G012540Melon (DHL92) v3.5.1lsimeB029
Lsi09G012540Watermelon (Charleston Gray)lsiwcgB016
Lsi09G012540Watermelon (Charleston Gray)lsiwcgB032
Lsi09G012540Watermelon (97103) v1lsiwmB013
Lsi09G012540Watermelon (97103) v1lsiwmB017