Cp4.1LG17g01800 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g01800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscriptional regulator SUPERMAN
LocationCp4.1LG17 : 1172882 .. 1173325 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCAAAAGTTTGAAGATGAACAGCCCACAAGAACAGCTTAGAATTACAAACAAACCAAACAACACAAGAGGAGATCATCAAGAAGAAGAAGAAGAAGAAGACATTGTTGGATTTGCATGGGGTTCATCAAGAGCTTATTCATGTGGGTTTTGCAAAAGGCAATTTCGATCTGCGCAAGCTCTTGGTGGCCACATGAATGTTCATCGAAGAGACCGAGCCAAGCTCCGAAGATCTCCTCCATTGGGTTCGCCTCATTTTCATGGATCCTCGTCTCAACCCATTAAGTTTCTCAAACTCTATGATTTCTCAAGCCTTAGAGGTGAAGAAGAAGCAGATGGAGAGTGTAAGATTTGGAAGAATGTTAAGAAGTTTGTGAAGGAGATTGATTTTCTTGGTAGTTCCAATGAGATTGATTTGGAACTTAGATTAGGGTTTTAG

mRNA sequence

ATGGAGAGCAAAAGTTTGAAGATGAACAGCCCACAAGAACAGCTTAGAATTACAAACAAACCAAACAACACAAGAGGAGATCATCAAGAAGAAGAAGAAGAAGAAGACATTGTTGGATTTGCATGGGGTTCATCAAGAGCTTATTCATGTGGGTTTTGCAAAAGGCAATTTCGATCTGCGCAAGCTCTTGGTGGCCACATGAATGTTCATCGAAGAGACCGAGCCAAGCTCCGAAGATCTCCTCCATTGGGTTCGCCTCATTTTCATGGATCCTCGTCTCAACCCATTAAGTTTCTCAAACTCTATGATTTCTCAAGCCTTAGAGGTGAAGAAGAAGCAGATGGAGAGTGTAAGATTTGGAAGAATGTTAAGAAGTTTGTGAAGGAGATTGATTTTCTTGGTAGTTCCAATGAGATTGATTTGGAACTTAGATTAGGGTTTTAG

Coding sequence (CDS)

ATGGAGAGCAAAAGTTTGAAGATGAACAGCCCACAAGAACAGCTTAGAATTACAAACAAACCAAACAACACAAGAGGAGATCATCAAGAAGAAGAAGAAGAAGAAGACATTGTTGGATTTGCATGGGGTTCATCAAGAGCTTATTCATGTGGGTTTTGCAAAAGGCAATTTCGATCTGCGCAAGCTCTTGGTGGCCACATGAATGTTCATCGAAGAGACCGAGCCAAGCTCCGAAGATCTCCTCCATTGGGTTCGCCTCATTTTCATGGATCCTCGTCTCAACCCATTAAGTTTCTCAAACTCTATGATTTCTCAAGCCTTAGAGGTGAAGAAGAAGCAGATGGAGAGTGTAAGATTTGGAAGAATGTTAAGAAGTTTGTGAAGGAGATTGATTTTCTTGGTAGTTCCAATGAGATTGATTTGGAACTTAGATTAGGGTTTTAG

Protein sequence

MESKSLKMNSPQEQLRITNKPNNTRGDHQEEEEEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLGSPHFHGSSSQPIKFLKLYDFSSLRGEEEADGECKIWKNVKKFVKEIDFLGSSNEIDLELRLGF
Homology
[Close]
BLAST of Cp4.1LG17g01800 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-13
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 26  GDHQEEEEEED-IVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLR------ 85
           GD+   +++ D ++GF+W   R+Y+C FCKR+FRSAQALGGHMNVHRRDRA+LR      
Sbjct: 25  GDYDNCQQDHDYLLGFSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPS 84

Query: 86  ----RSPPLGSPHFHGSS 93
                SPP  +P++  S+
Sbjct: 85  SSSTPSPPYPNPNYSYST 101

[Close]
BLAST of Cp4.1LG17g01800 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 46 RAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRR 80
          R+YSC FC R+F+SAQALGGHMNVHRRDRA+L++
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQ 86

[Close]
BLAST of Cp4.1LG17g01800 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 45 SRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRR 80
          SR+Y C FC R F +AQALGGHMN+HRRDRAKLR+
Sbjct: 32 SRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQ 66

[Close]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match: A0A0A0LNQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190780 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-41
Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = 1 

Query: 11  PQEQLRITNKPNNTR-GDHQEEEEEEDIVGFAWGSSRA-YSCGFCKRQFRSAQALGGHMN 70
           PQ + + + K NN R G+ +EEEE+E IV F W SSRA Y+CGFCKRQF+SAQALGGHMN
Sbjct: 31  PQLKAKASRKHNNKREGNQEEEEEKEIIVEFPWASSRASYTCGFCKRQFQSAQALGGHMN 90

Query: 71  VHRRDRAKLRRSPPLGSP-------HFHGSSSQPIKFLKLYDFSSLRGE---EEADGECK 130
           VHRRDRAKLRRS PL S         FHGSSSQPIKFLKLYDFSS  GE   +++DG C+
Sbjct: 91  VHRRDRAKLRRSLPLDSATNDDHHHDFHGSSSQPIKFLKLYDFSSFHGEQADDQSDGGCQ 150

Query: 131 IWKNVKKFV-KEIDFLGSSNEIDLELRLGF 148
           IWK V KFV KE   L +SN+IDLELRLGF
Sbjct: 151 IWKKVNKFVKKETALLATSNDIDLELRLGF 180

[Close]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match: A0A0B0PFV2_GOSAR (Transcriptional regulator SUPERMAN-like protein OS=Gossypium arboreum GN=F383_29846 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-13
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1 

Query: 33  EEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLGSPHFHGSS 92
           EE+ + GF+W   R+Y+C FC+R FRSAQALGGHMNVHRRD+A+LR+ PP      H SS
Sbjct: 8   EEDYLSGFSW-PPRSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPP--PMDHHVSS 67

Query: 93  SQPIKFLKLY---------DFSSLRGEEEADG--ECKIWKNVKKFVK------------- 148
             P +  K           D +S++G +   G  E K +    KF+K             
Sbjct: 68  PLPCEMKKWLVNETVVDSTDSTSMKGAKPLSGVKEFKDYGCKNKFMKKKKNNVNLDLDLD 127

[Close]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match: F6H8H2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g00080 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 1 

Query: 33  EEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLG-------- 92
           +E+D+ G++W   R+Y+C FCKR+FRSAQALGGHMNVHRRDRA+LRRSPP          
Sbjct: 45  DEDDLGGYSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNL 104

Query: 93  ----SPHFHGSS-----------SQPIKFLKLYDFSSL-----------------RGEEE 148
               +P+    S           + P+  L    FSSL                  G EE
Sbjct: 105 NLKPNPNLSTPSPPSLPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEE 164

[Close]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match: S8DR03_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_09274 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 55/140 (39.29%), Postives = 72/140 (51.43%), Query Frame = 1 

Query: 39  GFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLGSPHFH--------- 98
           GF+W   R+Y C FCKR+FRSAQALGGHMNVHRRDRA+LR SP      F          
Sbjct: 1   GFSW-PPRSYCCSFCKREFRSAQALGGHMNVHRRDRARLRLSPVRDGAQFSLIHSKLDPS 60

Query: 99  --------GSSSQPIKFL------------KLYDFSSLRG-EEEADGECKIWKNVKKFVK 148
                    S+S P  F             ++ D + + G ++E  GE K    + +   
Sbjct: 61  NTAFNTNPNSNSSPRVFFNPISIGVPTEVHQIDDETKIGGFQKEKVGEGKQGDQLVRLEL 120

[Close]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match: W9R3T1_9ROSA (Transcriptional regulator SUPERMAN OS=Morus notabilis GN=L484_017412 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 8   MNSPQEQLRITNKPNNTRGDHQEEEEEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHM 67
           +N P++Q   ++  NN    +Q  EE+  + GF+W   R+Y+C FCKR+FRSAQALGGHM
Sbjct: 21  INIPKDQYSWSHVYNN----NQSYEEDYMMNGFSW-PPRSYTCSFCKREFRSAQALGGHM 80

Query: 68  NVHRRDRAKLRRSPPLGSPHFHGSSSQPIKFLKL 102
           NVHR+DRA+LR+SPP  S H  G       FL L
Sbjct: 81  NVHRKDRARLRQSPP-RSDHGGGRYGSGTTFLNL 108

[Close]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match: AT3G23130.1 (AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-14
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 26  GDHQEEEEEED-IVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLR------ 85
           GD+   +++ D ++GF+W   R+Y+C FCKR+FRSAQALGGHMNVHRRDRA+LR      
Sbjct: 25  GDYDNCQQDHDYLLGFSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPS 84

Query: 86  ----RSPPLGSPHFHGSS 93
                SPP  +P++  S+
Sbjct: 85  SSSTPSPPYPNPNYSYST 101

[Close]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 48 YSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPP-LGSPHFHGSSSQP 96
          Y+C FC+R+FRSAQALGGHMNVHRRDRAKLR+ P  L  PH H   + P
Sbjct: 49 YTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHHHTPIANP 97

[Close]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match: AT2G37740.1 (AT2G37740.1 zinc-finger protein 10)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 17 ITNKPNNTRGDHQEEEEEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAK 76
          I  K N      +    E+D  G  W   R+Y+C FC+R+F+SAQALGGHMNVHRRDRA+
Sbjct: 9  IPKKSNKESSWEELAFAEDDAAGSLW-PPRSYTCSFCRREFKSAQALGGHMNVHRRDRAR 68

Query: 77 LRRS 81
          L+++
Sbjct: 69 LKQA 71

[Close]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match: AT4G17810.1 (AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-11
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 30 EEEEEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLR 79
          E++ + +I G  W   R+Y+C FC+R+FRSAQALGGHMNVHRRDRA  R
Sbjct: 29 EQDTKGNISGTTW-PPRSYTCNFCRREFRSAQALGGHMNVHRRDRASSR 76

[Close]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match: AT5G06070.1 (AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 

Query: 46 RAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRR 80
          R+YSC FC R+F+SAQALGGHMNVHRRDRA+L++
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQ 86

[Close]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match: gi|778674150|ref|XP_011650145.1| (PREDICTED: zinc finger protein 3-like [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-41
Identity = 99/150 (66.00%), Postives = 113/150 (75.33%), Query Frame = 1 

Query: 11  PQEQLRITNKPNNTR-GDHQEEEEEEDIVGFAWGSSRA-YSCGFCKRQFRSAQALGGHMN 70
           PQ + + + K NN R G+ +EEEE+E IV F W SSRA Y+CGFCKRQF+SAQALGGHMN
Sbjct: 31  PQLKAKASRKHNNKREGNQEEEEEKEIIVEFPWASSRASYTCGFCKRQFQSAQALGGHMN 90

Query: 71  VHRRDRAKLRRSPPLGSP-------HFHGSSSQPIKFLKLYDFSSLRGE---EEADGECK 130
           VHRRDRAKLRRS PL S         FHGSSSQPIKFLKLYDFSS  GE   +++DG C+
Sbjct: 91  VHRRDRAKLRRSLPLDSATNDDHHHDFHGSSSQPIKFLKLYDFSSFHGEQADDQSDGGCQ 150

Query: 131 IWKNVKKFV-KEIDFLGSSNEIDLELRLGF 148
           IWK V KFV KE   L +SN+IDLELRLGF
Sbjct: 151 IWKKVNKFVKKETALLATSNDIDLELRLGF 180

[Close]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match: gi|659130500|ref|XP_008465205.1| (PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 6.2e-41
Identity = 99/151 (65.56%), Postives = 112/151 (74.17%), Query Frame = 1 

Query: 11  PQEQLRITNKPNNTRGDHQEEEEEED--IVGFAWGSSRAYSCGFCKRQFRSAQALGGHMN 70
           PQ + + ++K +N R   QEEEE+E   IV F W SSRAY+CGFCKRQF+SAQALGGHMN
Sbjct: 31  PQLKAKASSKHSNKREGKQEEEEKEKEIIVEFPWASSRAYTCGFCKRQFQSAQALGGHMN 90

Query: 71  VHRRDRAKLRRSPPLGS----PHFH---GSSSQPIKFLKLYDFSSLRGE---EEADGECK 130
           VHRRDRAKLRRS PL S     H H   GSSSQPIKFLKLYDFSS  GE   +++DG CK
Sbjct: 91  VHRRDRAKLRRSLPLDSATNDDHHHDFLGSSSQPIKFLKLYDFSSFHGEQADDQSDGGCK 150

Query: 131 IWKNVKKFV--KEIDFLGSSNEIDLELRLGF 148
           IWK V KFV  KE   L +SN+IDLELRLGF
Sbjct: 151 IWKKVNKFVKKKETALLATSNDIDLELRLGF 181

[Close]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match: gi|728844344|gb|KHG23787.1| (Transcriptional regulator SUPERMAN -like protein [Gossypium arboreum])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1 

Query: 33  EEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLGSPHFHGSS 92
           EE+ + GF+W   R+Y+C FC+R FRSAQALGGHMNVHRRD+A+LR+ PP      H SS
Sbjct: 8   EEDYLSGFSW-PPRSYTCSFCERGFRSAQALGGHMNVHRRDKARLRQLPP--PMDHHVSS 67

Query: 93  SQPIKFLKLY---------DFSSLRGEEEADG--ECKIWKNVKKFVK------------- 148
             P +  K           D +S++G +   G  E K +    KF+K             
Sbjct: 68  PLPCEMKKWLVNETVVDSTDSTSMKGAKPLSGVKEFKDYGCKNKFMKKKKNNVNLDLDLD 127

[Close]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match: gi|296083590|emb|CBI23579.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 1 

Query: 33  EEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLG-------- 92
           +E+D+ G++W   R+Y+C FCKR+FRSAQALGGHMNVHRRDRA+LRRSPP          
Sbjct: 40  DEDDLGGYSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNL 99

Query: 93  ----SPHFHGSS-----------SQPIKFLKLYDFSSL-----------------RGEEE 148
               +P+    S           + P+  L    FSSL                  G EE
Sbjct: 100 NLKPNPNLSTPSPPSLPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEE 159

[Close]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match: gi|225432985|ref|XP_002280772.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 1 

Query: 33  EEEDIVGFAWGSSRAYSCGFCKRQFRSAQALGGHMNVHRRDRAKLRRSPPLG-------- 92
           +E+D+ G++W   R+Y+C FCKR+FRSAQALGGHMNVHRRDRA+LRRSPP          
Sbjct: 45  DEDDLGGYSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRRSPPRDDQYTIPNL 104

Query: 93  ----SPHFHGSS-----------SQPIKFLKLYDFSSL-----------------RGEEE 148
               +P+    S           + P+  L    FSSL                  G EE
Sbjct: 105 NLKPNPNLSTPSPPSLPTRLPAFTCPLPSLAASPFSSLSSPSSASPSELNAAQSFSGVEE 164

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g01800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SUP_ARATH9.3e-1350.00Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1[more]
RBE_ARATH4.8e-0976.47Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE... [more]
TAC1_ARATH4.1e-0874.29Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1[more]
BLAST of Cp4.1LG17g01800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNQ1_CUCSA1.1e-4166.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G190780 PE=4 SV=1[more]
A0A0B0PFV2_GOSAR1.0e-1341.13Transcriptional regulator SUPERMAN-like protein OS=Gossypium arboreum GN=F383_29... [more]
F6H8H2_VITVI1.3e-1337.80Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g00080 PE=4 SV=... [more]
S8DR03_9LAMI1.1e-1239.29Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_09274 PE=4 SV=1[more]
W9R3T1_9ROSA1.1e-1250.00Transcriptional regulator SUPERMAN OS=Morus notabilis GN=L484_017412 PE=4 SV=1[more]
BLAST of Cp4.1LG17g01800 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23130.15.3e-1450.00 C2H2 and C2HC zinc fingers superfamily protein[more]
AT2G42410.11.3e-1267.35 zinc finger protein 11[more]
AT2G37740.12.4e-1150.00 zinc-finger protein 10[more]
AT4G17810.14.2e-1161.22 C2H2 and C2HC zinc fingers superfamily protein[more]
AT5G06070.12.7e-1076.47 C2H2 and C2HC zinc fingers superfamily protein[more]
BLAST of Cp4.1LG17g01800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674150|ref|XP_011650145.1|1.6e-4166.00PREDICTED: zinc finger protein 3-like [Cucumis sativus][more]
gi|659130500|ref|XP_008465205.1|6.2e-4165.56PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo][more]
gi|728844344|gb|KHG23787.1|1.4e-1341.13Transcriptional regulator SUPERMAN -like protein [Gossypium arboreum][more]
gi|296083590|emb|CBI23579.3|1.9e-1337.80unnamed protein product [Vitis vinifera][more]
gi|225432985|ref|XP_002280772.1|1.9e-1337.80PREDICTED: transcriptional regulator SUPERMAN-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01800.1Cp4.1LG17g01800.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 50..70
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 48..75
score: 10
NoneNo IPR availablePANTHERPTHR26374FAMILY NOT NAMEDcoord: 1..95
score: 1.4
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 45..74
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g01800Cucsa.383800Cucumber (Gy14) v1cgycpeB1009
Cp4.1LG17g01800CmaCh08G010990Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g01800CmoCh08G010730Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g01800Cla007566Watermelon (97103) v1cpewmB334
Cp4.1LG17g01800Csa2G190780Cucumber (Chinese Long) v2cpecuB306
Cp4.1LG17g01800MELO3C026785Melon (DHL92) v3.5.1cpemeB310
Cp4.1LG17g01800ClCG06G006780Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g01800CSPI02G10570Wild cucumber (PI 183967)cpecpiB306
Cp4.1LG17g01800Lsi09G012540Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g01800MELO3C006453.2Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g01800MELO3C026785.2Melon (DHL92) v3.6.1cpemedB362
Cp4.1LG17g01800CsaV3_2G012990Cucumber (Chinese Long) v3cpecucB0377
Cp4.1LG17g01800CsaV3_3G012410Cucumber (Chinese Long) v3cpecucB0385
Cp4.1LG17g01800Bhi12G001460Wax gourdcpewgoB0388
Cp4.1LG17g01800CsGy3G012420Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g01800CsGy2G010580Cucumber (Gy14) v2cgybcpeB203
Cp4.1LG17g01800Carg10948Silver-seed gourdcarcpeB1503
Cp4.1LG17g01800Carg16576Silver-seed gourdcarcpeB0333
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g01800Cp4.1LG03g10150Cucurbita pepo (Zucchini)cpecpeB333
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g01800Bottle gourd (USVL1VR-Ls)cpelsiB265
Cp4.1LG17g01800Bottle gourd (USVL1VR-Ls)cpelsiB267
Cp4.1LG17g01800Bottle gourd (USVL1VR-Ls)cpelsiB269
Cp4.1LG17g01800Watermelon (Charleston Gray)cpewcgB282
Cp4.1LG17g01800Watermelon (Charleston Gray)cpewcgB293
Cp4.1LG17g01800Watermelon (97103) v1cpewmB314
Cp4.1LG17g01800Watermelon (97103) v1cpewmB331
Cp4.1LG17g01800Watermelon (97103) v1cpewmB326
Cp4.1LG17g01800Melon (DHL92) v3.5.1cpemeB316
Cp4.1LG17g01800Cucumber (Gy14) v2cgybcpeB936
Cp4.1LG17g01800Silver-seed gourdcarcpeB0323
Cp4.1LG17g01800Silver-seed gourdcarcpeB1058
Cp4.1LG17g01800Silver-seed gourdcarcpeB1096
Cp4.1LG17g01800Silver-seed gourdcarcpeB1330
Cp4.1LG17g01800Cucurbita pepo (Zucchini)cpecpeB169
Cp4.1LG17g01800Cucurbita pepo (Zucchini)cpecpeB257
Cp4.1LG17g01800Cucurbita pepo (Zucchini)cpecpeB340
Cp4.1LG17g01800Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g01800Cucurbita maxima (Rimu)cmacpeB266
Cp4.1LG17g01800Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g01800Cucurbita maxima (Rimu)cmacpeB528
Cp4.1LG17g01800Cucurbita maxima (Rimu)cmacpeB631
Cp4.1LG17g01800Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g01800Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g01800Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g01800Cucurbita moschata (Rifu)cmocpeB777
Cp4.1LG17g01800Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g01800Wild cucumber (PI 183967)cpecpiB349
Cp4.1LG17g01800Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g01800Cucumber (Chinese Long) v2cpecuB348