Lsi04G006840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G006840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chaperone dnaJ-like protein
Location	chr04 : 6271211 .. 6271513 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCCATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGCCGCGTCCCCTGCCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGCCGCATGTTCTGCAGCAGCTGTGGCGGTTCCGGCACCGGCCGCCCTATCCCCGCCCAAATCTCCGTCCGCCGATCCAATTATCCCTCCTCTTCCTCCTGA

mRNA sequence

ATGGTTCCCATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGCCGCGTCCCCTGCCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGCCGCATGTTCTGCAGCAGCTGTGGCGGTTCCGGCACCGGCCGCCCTATCCCCGCCCAAATCTCCGTCCGCCGATCCAATTATCCCTCCTCTTCCTCCTGA

Coding sequence (CDS)

ATGGTTCCCATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGCCGCGTCCCCTGCCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGCCGCATGTTCTGCAGCAGCTGTGGCGGTTCCGGCACCGGCCGCCCTATCCCCGCCCAAATCTCCGTCCGCCGATCCAATTATCCCTCCTCTTCCTCCTGA

Protein sequence

MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS

Homology

[Close]

BLAST of Lsi04G006840 vs. TrEMBL
Match: A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS 101
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRRSNYPSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Lsi04G006840 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.6e-41
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIVLTQ+ATGLSVL GAVLVKSVMD KPMAG FPRCPSCNGTGRV CLCSRWSDGDIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPS 98
          CRTC+GSGRM CSSCGGSGTGRPI AQISVRR N PS
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGPS 97

[Close]

BLAST of Lsi04G006840 vs. TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.3e-40
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIVLTQLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNGTGRV C+CSRWSDGD+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTP 96

[Close]

BLAST of Lsi04G006840 vs. TrEMBL
Match: G7JBY8_MEDTR (Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.6e-39
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAG-SFPRCPSCNGTGRVPCLCSRWSDGDI 60
          M P+V++QLATGLSVLAGAVLVK VMD KPMAG SFPRCPSCNGTGRVPCLCSRWSDGDI
Sbjct: 1  MGPLVISQLATGLSVLAGAVLVKQVMDQKPMAGPSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPS 98
          GC TCSGSGRM CSSCGGSGTGRP+PA+I++R +N PS
Sbjct: 61 GCSTCSGSGRMGCSSCGGSGTGRPLPARITIRPTNRPS 98

[Close]

BLAST of Lsi04G006840 vs. TrEMBL
Match: F6HGA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.0e-39
Identity = 82/97 (84.54%), Postives = 85/97 (87.63%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIVLTQLATGLSVLAGAVLVKSVMD KPMAG FPRC SCNGTGRV CLCSRWSDGD+G
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPS 98
          CRTC+GSGRM CSSCGG+GTGRPIP QIS R    PS
Sbjct: 61 CRTCAGSGRMACSSCGGTGTGRPIPIQISARPPKRPS 97

[Close]

BLAST of Lsi04G006840 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-40
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIV+TQLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNGTGRV C CSRWSDGD+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYP 97
          CR CSGSGR  CS+CGGSGTGRP+PAQI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of Lsi04G006840 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS 101
           CRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RRSNYPSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Lsi04G006840 vs. NCBI nr
Match: gi|778704588|ref|XP_011655560.1| (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-47
Identity = 96/100 (96.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPSSSS 101
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRRSNYPSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Lsi04G006840 vs. NCBI nr
Match: gi|703112866|ref|XP_010100228.1| (hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIVLTQ+ATGLSVL GAVLVKSVMD KPMAG FPRCPSCNGTGRV CLCSRWSDGDIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPS 98
          CRTC+GSGRM CSSCGGSGTGRPI AQISVRR N PS
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGPS 97

[Close]

BLAST of Lsi04G006840 vs. NCBI nr
Match: gi|502135321|ref|XP_004502293.1| (PREDICTED: uncharacterized protein LOC101507616 [Cicer arietinum])

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-40
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M P+VL+QLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNGTGRVPCLCSRWSDGD+G
Sbjct: 1  MGPLVLSQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVPCLCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYPS 98
          C TC+GSGRM CSSCGGSGTGRP+PA+I++R SN PS
Sbjct: 61 CSTCAGSGRMGCSSCGGSGTGRPLPARIAIRPSNRPS 97

[Close]

BLAST of Lsi04G006840 vs. NCBI nr
Match: gi|702278098|ref|XP_010044812.1| (PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis])

HSP 1 Score: 171.8 bits (434), Expect = 6.1e-40
Identity = 81/96 (84.38%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60
          M PIVLTQLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNGTGRV C+CSRWSDGD+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRSNYP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTP 96

The following BLAST results are available for this feature:

BLAST of Lsi04G006840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G006840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPV9_CUCSA	2.8e-47	96.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1	[more]
W9RCB8_9ROSA	8.6e-41	88.66	Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1	[more]
A0A059D890_EUCGR	4.3e-40	84.38	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1	[more]
G7JBY8_MEDTR	3.6e-39	83.67	Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1	[more]
F6HGA7_VITVI	8.0e-39	84.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=...	[more]

BLAST of Lsi04G006840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	1.3e-40	78.13	chaperone protein dnaJ-related	[more]

BLAST of Lsi04G006840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090468\|ref\|XP_008446034.1\|	1.2e-48	97.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
gi\|778704588\|ref\|XP_011655560.1\|	3.9e-47	96.00	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus]	[more]
gi\|703112866\|ref\|XP_010100228.1\|	1.2e-40	88.66	hypothetical protein L484_001360 [Morus notabilis]	[more]
gi\|502135321\|ref\|XP_004502293.1\|	2.1e-40	84.54	PREDICTED: uncharacterized protein LOC101507616 [Cicer arietinum]	[more]
gi\|702278098\|ref\|XP_010044812.1\|	6.1e-40	84.38	PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding
GO:0031072	heat shock protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001305	HSP_DnaJ_Cys-rich_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006840.1	Lsi04G006840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	G3DSA:2.10.230.10		coord: 35..80 score: 7.
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..99 score: 3.4
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..99 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G006840	Csa5G589380	Cucumber (Chinese Long) v2	culsiB368
Lsi04G006840	CSPI05G21400	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G006840	Cucsa.075710	Cucumber (Gy14) v1	cgylsiB076
Lsi04G006840	CmaCh04G018380	Cucurbita maxima (Rimu)	cmalsiB670
Lsi04G006840	CmaCh12G000820	Cucurbita maxima (Rimu)	cmalsiB172
Lsi04G006840	CmoCh04G019350	Cucurbita moschata (Rifu)	cmolsiB661
Lsi04G006840	CmoCh12G000640	Cucurbita moschata (Rifu)	cmolsiB160
Lsi04G006840	MELO3C011864	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G006840	MELO3C011864.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G006840	Cla97C11G219560	Watermelon (97103) v2	lsiwmbB271
Lsi04G006840	Bhi07G001532	Wax gourd	lsiwgoB380
Lsi04G006840	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cpelsiB672
Lsi04G006840	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	cpelsiB353
Lsi04G006840	Carg20443	Silver-seed gourd	carlsiB567
Lsi04G006840	Carg19255	Silver-seed gourd	carlsiB275
Lsi04G006840	CsaV3_5G030260	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G006840	Cucurbita maxima (Rimu)	cmalsiB383
Lsi04G006840	Cucurbita moschata (Rifu)	cmolsiB365
Lsi04G006840	Cucurbita pepo (Zucchini)	cpelsiB030
Lsi04G006840	Watermelon (Charleston Gray)	lsiwcgB264
Lsi04G006840	Watermelon (97103) v1	lsiwmB339
Lsi04G006840	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G006840	Silver-seed gourd	carlsiB629