Cp4.1LG01g16170 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16170
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Drought-induced protein 1
Location	Cp4.1LG01 : 9896086 .. 9896385 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCGGTCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCTTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCAGGCTCTGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCCTCCTCCTGA

mRNA sequence

ATGGTTCCGGTCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCTTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCAGGCTCTGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCCTCCTCCTGA

Coding sequence (CDS)

ATGGTTCCGGTCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCTTTCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCAGGCTCTGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCCTCCTCCTGA

Protein sequence

MVPVVLTQLATGLSVLAGAVLVKSVMDKPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS

Homology

[Close]

BLAST of Cp4.1LG01g16170 vs. TrEMBL
Match: A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 1


Query: 1   MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Cp4.1LG01g16170 vs. TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-38
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M P+VLTQLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNGTGRV C+CSRWSD D+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N PP
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTPP 97

[Close]

BLAST of Cp4.1LG01g16170 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-38
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M P+VLTQ+ATGLSVL GAVLVKSVMD KPMAG FPRCPSCNGTGRV CLCSRWSD DIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CRTC+GSGRM CSSCGGSGTGRPI AQISVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGP 96

[Close]

BLAST of Cp4.1LG01g16170 vs. TrEMBL
Match: G7JBY8_MEDTR (Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.4e-37
Identity = 81/97 (83.51%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAG-SFPRCPSCNGTGRVPCLCSRWSDRDI 60
          M P+V++QLATGLSVLAGAVLVK VMD KPMAG SFPRCPSCNGTGRVPCLCSRWSD DI
Sbjct: 1  MGPLVISQLATGLSVLAGAVLVKQVMDQKPMAGPSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          GC TCSGSGRM CSSCGGSGTGRP+PA+I++R TN P
Sbjct: 61 GCSTCSGSGRMGCSSCGGSGTGRPLPARITIRPTNRP 97

[Close]

BLAST of Cp4.1LG01g16170 vs. TrEMBL
Match: F6HGA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.8e-36
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M P+VLTQLATGLSVLAGAVLVKSVMD KPMAG FPRC SCNGTGRV CLCSRWSD D+G
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CRTC+GSGRM CSSCGG+GTGRPIP QIS R    P
Sbjct: 61 CRTCAGSGRMACSSCGGTGTGRPIPIQISARPPKRP 96

[Close]

BLAST of Cp4.1LG01g16170 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 154.5 bits (389), Expect = 3.5e-38
Identity = 73/96 (76.04%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M P+V+TQLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNGTGRV C CSRWSD D+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CR CSGSGR  CS+CGGSGTGRP+PAQI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of Cp4.1LG01g16170 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 1   MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Cp4.1LG01g16170 vs. NCBI nr
Match: gi|778704588|ref|XP_011655560.1| (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 1


Query: 1   MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Cp4.1LG01g16170 vs. NCBI nr
Match: gi|764645636|ref|XP_011457485.1| (PREDICTED: uncharacterized protein LOC105349460 [Fragaria vesca subsp. vesca])

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-39
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 3  PVVLTQLATGLSVLAGAVLVKSVMDKPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIGCRT 62
          P+VLTQ+A GL VLAGA +VK++MDKPMAG FPRCPSCNGTGRV CLCSRWSD D+GCRT
Sbjct: 4  PIVLTQIAQGLGVLAGAAIVKTLMDKPMAGPFPRCPSCNGTGRVSCLCSRWSDGDVGCRT 63

Query: 63 CSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSS 99
          CSGSGR FCSSCGGSGTGRP+P Q+SVRR N PP S
Sbjct: 64 CSGSGRTFCSSCGGSGTGRPLPVQLSVRRQNNPPGS 99

[Close]

BLAST of Cp4.1LG01g16170 vs. NCBI nr
Match: gi|702278098|ref|XP_010044812.1| (PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis])

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-38
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M P+VLTQLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNGTGRV C+CSRWSD D+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N PP
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTPP 97

[Close]

BLAST of Cp4.1LG01g16170 vs. NCBI nr
Match: gi|1012103459|ref|XP_015958005.1| (PREDICTED: uncharacterized protein LOC107482124 [Arachis duranensis])

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-38
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1


Query: 1   MVPVVLTQLATGLSVLAGAVLVKSVMDK---PMAGSFPRCPSCNGTGRVPCLCSRWSDRD 60
           M P+VLTQLATGLSVLAGAVLVKSVMD     MAGSFPRCPSCNGTGRV C+CSRWSD D
Sbjct: 1   MGPIVLTQLATGLSVLAGAVLVKSVMDNNPNTMAGSFPRCPSCNGTGRVTCICSRWSDGD 60

Query: 61  IGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSS 99
           +GCRTC+GSGRM CSSCGG+GTGRPIPA+I+VR TN PP S
Sbjct: 61  VGCRTCAGSGRMACSSCGGTGTGRPIPARIAVRPTNRPPPS 101

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g16170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPV9_CUCSA	3.1e-43	91.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1	[more]
A0A059D890_EUCGR	1.8e-38	82.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1	[more]
W9RCB8_9ROSA	5.1e-38	86.46	Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1	[more]
G7JBY8_MEDTR	7.4e-37	83.51	Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1	[more]
F6HGA7_VITVI	4.8e-36	82.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g16170 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	3.5e-38	76.04	chaperone protein dnaJ-related	[more]

BLAST of Cp4.1LG01g16170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090468\|ref\|XP_008446034.1\|	1.4e-44	92.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
gi\|778704588\|ref\|XP_011655560.1\|	4.5e-43	91.00	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus]	[more]
gi\|764645636\|ref\|XP_011457485.1\|	5.1e-39	80.21	PREDICTED: uncharacterized protein LOC105349460 [Fragaria vesca subsp. vesca]	[more]
gi\|702278098\|ref\|XP_010044812.1\|	2.5e-38	82.47	PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis]	[more]
gi\|1012103459\|ref\|XP_015958005.1\|	5.7e-38	81.19	PREDICTED: uncharacterized protein LOC107482124 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding
GO:0031072	heat shock protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001305	HSP_DnaJ_Cys-rich_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16170.1	Cp4.1LG01g16170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	G3DSA:2.10.230.10		coord: 34..79 score: 2.
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..98 score: 3.3
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..98 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16170	Cucsa.075710	Cucumber (Gy14) v1	cgycpeB0123
Cp4.1LG01g16170	CmaCh12G000820	Cucurbita maxima (Rimu)	cmacpeB186
Cp4.1LG01g16170	CmaCh04G018380	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16170	CmoCh04G019350	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g16170	CmoCh12G000640	Cucurbita moschata (Rifu)	cmocpeB162
Cp4.1LG01g16170	Csa5G589380	Cucumber (Chinese Long) v2	cpecuB440
Cp4.1LG01g16170	MELO3C011864	Melon (DHL92) v3.5.1	cpemeB364
Cp4.1LG01g16170	CSPI05G21400	Wild cucumber (PI 183967)	cpecpiB440
Cp4.1LG01g16170	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	cpelsiB353
Cp4.1LG01g16170	MELO3C011864.2	Melon (DHL92) v3.6.1	cpemedB424
Cp4.1LG01g16170	CsaV3_5G030260	Cucumber (Chinese Long) v3	cpecucB0544
Cp4.1LG01g16170	Bhi07G001532	Wax gourd	cpewgoB0555
Cp4.1LG01g16170	Carg19255	Silver-seed gourd	carcpeB0414
Cp4.1LG01g16170	Carg20443	Silver-seed gourd	carcpeB0888

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g16170	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cpecpeB406

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16170	Cucurbita maxima (Rimu)	cmacpeB431
Cp4.1LG01g16170	Cucurbita moschata (Rifu)	cmocpeB393
Cp4.1LG01g16170	Watermelon (Charleston Gray)	cpewcgB364
Cp4.1LG01g16170	Watermelon (97103) v1	cpewmB463
Cp4.1LG01g16170	Cucumber (Gy14) v2	cgybcpeB649
Cp4.1LG01g16170	Silver-seed gourd	carcpeB0971
Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	cpecpeB033