Carg20443 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20443
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	chaperone protein dnaJ-related
Location	Cucurbita_argyrosperma_scaffold_172 : 3496 .. 3789 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGATTGCGCTGAGTCAGATTGCCACCGGTCTGAGCGTGTTGGCCGGCGCGGTGGTGGTGAAGTCCGTCATTGAGCAGAAGCCGATGGCCAGGCCTATGCCGAGGTGCGCCACATGTAATGGGTCGGGTCGGGTTACATGCCTATGTGTCCGGTGGTCCGATGGAGATGTTGGGTGCCGGTCGTGTTCCGGGTCGGGTCGGATGTCGTGTAGAAGCTGCGGTGGCGGCGGAAGAGGGCGGCCGATCACCGTGCAGTTATCGGCTAGCCAACCCAACAGCCGATTTTGA

mRNA sequence

ATGGATCCGATTGCGCTGAGTCAGATTGCCACCGGTCTGAGCGTGTTGGCCGGCGCGGTGGTGGTGAAGTCCGTCATTGAGCAGAAGCCGATGGCCAGGCCTATGCCGAGGTGCGCCACATGTAATGGGTCGGGTCGGGTTACATGCCTATGTGTCCGGTGGTCCGATGGAGATGTTGGGTGCCGGTCGTGTTCCGGGTCGGGTCGGATGTCGTGTAGAAGCTGCGGTGGCGGCGGAAGAGGGCGGCCGATCACCGTGCAGTTATCGGCTAGCCAACCCAACAGCCGATTTTGA

Coding sequence (CDS)

ATGGATCCGATTGCGCTGAGTCAGATTGCCACCGGTCTGAGCGTGTTGGCCGGCGCGGTGGTGGTGAAGTCCGTCATTGAGCAGAAGCCGATGGCCAGGCCTATGCCGAGGTGCGCCACATGTAATGGGTCGGGTCGGGTTACATGCCTATGTGTCCGGTGGTCCGATGGAGATGTTGGGTGCCGGTCGTGTTCCGGGTCGGGTCGGATGTCGTGTAGAAGCTGCGGTGGCGGCGGAAGAGGGCGGCCGATCACCGTGCAGTTATCGGCTAGCCAACCCAACAGCCGATTTTGA

Protein sequence

MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVGCRSCSGSGRMSCRSCGGGGRGRPITVQLSASQPNSRF

Homology

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BLAST of Carg20443 vs. NCBI nr
Match: XP_022132135.1 (uncharacterized protein LOC111005075 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 8.3e-30
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          MDP+ L+Q+ATGLSV+AGAVVVKSV++QKPMA P+P C TCNGSGRVTC+CVRWSDGD G
Sbjct: 1  MDPMGLAQLATGLSVVAGAVVVKSVMDQKPMAGPLPTCPTCNGSGRVTCICVRWSDGDFG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPNSRF 98
          CRSC+ XXXXXXXXXXXXXXGRPITVQLSA QPN RF
Sbjct: 61 CRSCAGXXXXXXXXXXXXXXGRPITVQLSAGQPNRRF 97

[Close]

BLAST of Carg20443 vs. NCBI nr
Match: XP_004142934.1 (PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus] >KGN62373.1 hypothetical protein Csa_2G351540 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.0e-27
Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQK-PMARPMPRCATCNGSGRVTCLCVRWSDGDV 60
          MD IALSQ+ATGLSVLAGAVVVKSVIEQK PMA  MPRC TC GSGRVTC+CVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          GCRSCS XXXXXXXXXXXXXXGRPITVQLS SQ N
Sbjct: 61 GCRSCSGXXXXXXXXXXXXXXGRPITVQLSMSQSN 95

[Close]

BLAST of Carg20443 vs. NCBI nr
Match: XP_010100228.1 (uncharacterized protein LOC21384964 [Morus notabilis] >EXB81983.1 hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QKPMA P PRC +CNG+GRVTCLC RWSDGD+G
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          CR+C+ XXXXXXXXXXXXX GRPIT Q+S  +PN
Sbjct: 61 CRTCAGXXXXXXXXXXXXXTGRPITAQISVRRPN 94

[Close]

BLAST of Carg20443 vs. NCBI nr
Match: XP_003631355.1 (PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera])

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-25
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI L+Q+ATGLSVLAGAV+VKSV++QKPMA P PRC++CNG+GRV+CLC RWSDGDVG
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQP 94
          CR+C+XXXXXXXXX      GRPI +Q+SA  P
Sbjct: 61 CRTCAXXXXXXXXXCGGTGTGRPIPIQISARPP 93

[Close]

BLAST of Carg20443 vs. NCBI nr
Match: XP_010249022.1 (PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera])

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-25
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI +SQ+ATGL VLAGAV+VKSV+EQKPMA P PRC +CNG+GRV C+C RWSDGDVG
Sbjct: 1  MGPIVVSQLATGLGVLAGAVLVKSVMEQKPMAGPWPRCPSCNGTGRVNCMCTRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          CR+C+ XXXXXXXXX     GRPI VQLS   PN
Sbjct: 61 CRTCAGXXXXXXXXXGGTGTGRPIPVQLSVRSPN 94

[Close]

BLAST of Carg20443 vs. TAIR10
Match: AT5G43260.1 (chaperone protein dnaJ-related)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-26
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI ++Q+ATG+SVLAGAV +KSV++QKPMA   PRC TCNG+GRVTC C RWSDGDVG
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          CR CS XXXXXXXXXXXX  GRP+  Q++   PN
Sbjct: 61 CRRCSGXXXXXXXXXXXXGTGRPLPAQITVQPPN 94

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BLAST of Carg20443 vs. TrEMBL
Match: tr|A0A0A0LKQ8|A0A0A0LKQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.7e-28
Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQK-PMARPMPRCATCNGSGRVTCLCVRWSDGDV 60
          MD IALSQ+ATGLSVLAGAVVVKSVIEQK PMA  MPRC TC GSGRVTC+CVRWSDGDV
Sbjct: 1  MDQIALSQLATGLSVLAGAVVVKSVIEQKLPMAGSMPRCPTCKGSGRVTCICVRWSDGDV 60

Query: 61 GCRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          GCRSCS XXXXXXXXXXXXXXGRPITVQLS SQ N
Sbjct: 61 GCRSCSGXXXXXXXXXXXXXXGRPITVQLSMSQSN 95

[Close]

BLAST of Carg20443 vs. TrEMBL
Match: tr|W9RCB8|W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-26
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M+PI L+Q+ATGLSVL GAV+VKSV++QKPMA P PRC +CNG+GRVTCLC RWSDGD+G
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          CR+C+ XXXXXXXXXXXXX GRPIT Q+S  +PN
Sbjct: 61 CRTCAGXXXXXXXXXXXXXTGRPITAQISVRRPN 94

[Close]

BLAST of Carg20443 vs. TrEMBL
Match: tr|F6HGA7|F6HGA7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-25
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI L+Q+ATGLSVLAGAV+VKSV++QKPMA P PRC++CNG+GRV+CLC RWSDGDVG
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQP 94
          CR+C+XXXXXXXXX      GRPI +Q+SA  P
Sbjct: 61 CRTCAXXXXXXXXXCGGTGTGRPIPIQISARPP 93

[Close]

BLAST of Carg20443 vs. TrEMBL
Match: tr|A0A1U7ZCR3|A0A1U7ZCR3_NELNU (uncharacterized protein LOC104591728 OS=Nelumbo nucifera OX=4432 GN=LOC104591728 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-25
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI +SQ+ATGL VLAGAV+VKSV+EQKPMA P PRC +CNG+GRV C+C RWSDGDVG
Sbjct: 1  MGPIVVSQLATGLGVLAGAVLVKSVMEQKPMAGPWPRCPSCNGTGRVNCMCTRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPN 95
          CR+C+ XXXXXXXXX     GRPI VQLS   PN
Sbjct: 61 CRTCAGXXXXXXXXXGGTGTGRPIPVQLSVRSPN 94

[Close]

BLAST of Carg20443 vs. TrEMBL
Match: tr|A0A059D890|A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 69/95 (72.63%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MDPIALSQIATGLSVLAGAVVVKSVIEQKPMARPMPRCATCNGSGRVTCLCVRWSDGDVG 60
          M PI L+Q+ATGLSVLAGA +VKSV++QKPMA P PRC +CNG+GRV C+C RWSDGDVG
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRSCSXXXXXXXXXXXXXXXGRPITVQLSASQPNS 96
          CR+C+ XXXXXXXXXXXXX GRP+ VQLS  +PN+
Sbjct: 61 CRTCAGXXXXXXXXXXXXXTGRPLPVQLSVRRPNT 95

The following BLAST results are available for this feature:

BLAST of Carg20443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132135.1	8.3e-30	82.47	uncharacterized protein LOC111005075 [Momordica charantia]	[more]
XP_004142934.1	1.0e-27	88.42	PREDICTED: uncharacterized protein LOC101220122 [Cucumis sativus] >KGN62373.1 hy...	[more]
XP_010100228.1	1.2e-25	74.47	uncharacterized protein LOC21384964 [Morus notabilis] >EXB81983.1 hypothetical p...	[more]
XP_003631355.1	8.0e-25	70.97	PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]	[more]
XP_010249022.1	8.0e-25	71.28	PREDICTED: uncharacterized protein LOC104591728 [Nelumbo nucifera]	[more]

BLAST of Carg20443 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	1.4e-26	69.15	chaperone protein dnaJ-related	[more]

BLAST of Carg20443 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20443 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKQ8\|A0A0A0LKQ8_CUCSA	6.7e-28	88.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351540 PE=4 SV=1	[more]
tr\|W9RCB8\|W9RCB8_9ROSA	8.2e-26	74.47	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001360 PE=4 SV=1	[more]
tr\|F6HGA7\|F6HGA7_VITVI	5.3e-25	70.97	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03640 PE=4 SV=...	[more]
tr\|A0A1U7ZCR3\|A0A1U7ZCR3_NELNU	5.3e-25	71.28	uncharacterized protein LOC104591728 OS=Nelumbo nucifera OX=4432 GN=LOC104591728...	[more]
tr\|A0A059D890\|A0A059D890_EUCGR	1.5e-24	72.63	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03495 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20443-RA	Carg20443-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20443	Csa5G589380	Cucumber (Chinese Long) v2	carcuB0648
Carg20443	MELO3C011864	Melon (DHL92) v3.5.1	carmeB0623
Carg20443	CSPI05G21400	Wild cucumber (PI 183967)	carcpiB0657
Carg20443	Cucsa.075710	Cucumber (Gy14) v1	carcgyB0697
Carg20443	CmaCh12G000820	Cucurbita maxima (Rimu)	carcmaB0881
Carg20443	CmaCh04G018380	Cucurbita maxima (Rimu)	carcmaB0884
Carg20443	CmoCh12G000640	Cucurbita moschata (Rifu)	carcmoB0855
Carg20443	CmoCh04G019350	Cucurbita moschata (Rifu)	carcmoB0858
Carg20443	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	carlsiB567
Carg20443	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	carcpeB0889
Carg20443	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	carcpeB0888
Carg20443	MELO3C011864.2	Melon (DHL92) v3.6.1	carmedB0630
Carg20443	CsaV3_5G030260	Cucumber (Chinese Long) v3	carcucB0658
Carg20443	Bhi07G001532	Wax gourd	carwgoB0744

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None