CmaCh04G018380 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G018380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chaperone dnaJ-like protein
Location	Cma_Chr04 : 9267529 .. 9267828 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCTTCCTCCTAA

mRNA sequence

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCTTCCTCCTAA

Coding sequence (CDS)

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAATTATCCCCCCTCTTCCTCCTAA

Protein sequence

MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS

Homology

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BLAST of CmaCh04G018380 vs. TrEMBL
Match: A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-42
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

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BLAST of CmaCh04G018380 vs. TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.6e-37
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQLATGLSVLAGA LVKSVMD KPMAG  PRCPSCNGTGRV C+CSRWSD D+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N PP
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTPP 97

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BLAST of CmaCh04G018380 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-37
Identity = 83/96 (86.46%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQ+ATGLSVL GAVLVKSVMD KPMAG  PRCPSCNGTGRV CLCSRWSD DIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CRTC+GSGRM CSSCGGSGTGRPI AQISVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGP 96

[Close]

BLAST of CmaCh04G018380 vs. TrEMBL
Match: G7JBY8_MEDTR (Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.3e-36
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSS-PRCPSCNGTGRVPCLCSRWSDRDI 60
          M P+V++QLATGLSVLAGAVLVK VMD KPMAG S PRCPSCNGTGRVPCLCSRWSD DI
Sbjct: 1  MGPLVISQLATGLSVLAGAVLVKQVMDQKPMAGPSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          GC TCSGSGRM CSSCGGSGTGRP+PA+I++R TN P
Sbjct: 61 GCSTCSGSGRMGCSSCGGSGTGRPLPARITIRPTNRP 97

[Close]

BLAST of CmaCh04G018380 vs. TrEMBL
Match: B9GZP9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17030g PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-35
Identity = 82/98 (83.67%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQLATGLSVLAGAVLVKSVMD KPMAG  P CPSCNGTGRV CLCSRWSD D G
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQKPMAG--PLCPSCNGTGRVACLCSRWSDGDAG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPS 98
          CR CSGSGRM CSSCGG+GTGRPIP QIS+R  N PPS
Sbjct: 61 CRACSGSGRMACSSCGGTGTGRPIPVQISMRSPNRPPS 96

[Close]

BLAST of CmaCh04G018380 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 151.0 bits (380), Expect = 3.9e-37
Identity = 73/96 (76.04%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIV+TQLATG+SVLAGAV +KSVMD KPMAG  PRCP+CNGTGRV C CSRWSD D+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYP 96
          CR CSGSGR  CS+CGGSGTGRP+PAQI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

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BLAST of CmaCh04G018380 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRTCSGSGRMFCSSCGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of CmaCh04G018380 vs. NCBI nr
Match: gi|778704588|ref|XP_011655560.1| (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.9e-42
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RTCSGSGRMFCSSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of CmaCh04G018380 vs. NCBI nr
Match: gi|764645636|ref|XP_011457485.1| (PREDICTED: uncharacterized protein LOC105349460 [Fragaria vesca subsp. vesca])

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-38
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 1


Query: 3  PIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGCRT 62
          PIVLTQ+A GL VLAGA +VK++MDKPMAG  PRCPSCNGTGRV CLCSRWSD D+GCRT
Sbjct: 4  PIVLTQIAQGLGVLAGAAIVKTLMDKPMAGPFPRCPSCNGTGRVSCLCSRWSDGDVGCRT 63

Query: 63 CSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSS 99
          CSGSGR FCSSCGGSGTGRP+P Q+SVRR N PP S
Sbjct: 64 CSGSGRTFCSSCGGSGTGRPLPVQLSVRRQNNPPGS 99

[Close]

BLAST of CmaCh04G018380 vs. NCBI nr
Match: gi|702278098|ref|XP_010044812.1| (PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis])

HSP 1 Score: 162.5 bits (410), Expect = 3.7e-37
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQLATGLSVLAGA LVKSVMD KPMAG  PRCPSCNGTGRV C+CSRWSD D+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 CRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPP 97
          CRTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N PP
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTPP 97

[Close]

BLAST of CmaCh04G018380 vs. NCBI nr
Match: gi|1012103459|ref|XP_015958005.1| (PREDICTED: uncharacterized protein LOC107482124 [Arachis duranensis])

HSP 1 Score: 161.4 bits (407), Expect = 8.2e-37
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDK---PMAGSSPRCPSCNGTGRVPCLCSRWSDRD 60
           M PIVLTQLATGLSVLAGAVLVKSVMD     MAGS PRCPSCNGTGRV C+CSRWSD D
Sbjct: 1   MGPIVLTQLATGLSVLAGAVLVKSVMDNNPNTMAGSFPRCPSCNGTGRVTCICSRWSDGD 60

Query: 61  IGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSS 99
           +GCRTC+GSGRM CSSCGG+GTGRPIPA+I+VR TN PP S
Sbjct: 61  VGCRTCAGSGRMACSSCGGTGTGRPIPARIAVRPTNRPPPS 101

The following BLAST results are available for this feature:

BLAST of CmaCh04G018380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G018380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPV9_CUCSA	3.4e-42	91.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1	[more]
A0A059D890_EUCGR	2.6e-37	82.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1	[more]
W9RCB8_9ROSA	5.7e-37	86.46	Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1	[more]
G7JBY8_MEDTR	6.3e-36	82.47	Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1	[more]
B9GZP9_POPTR	2.4e-35	83.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s17030g PE=4 SV=1	[more]

BLAST of CmaCh04G018380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	3.9e-37	76.04	chaperone protein dnaJ-related	[more]

BLAST of CmaCh04G018380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090468\|ref\|XP_008446034.1\|	1.5e-43	92.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
gi\|778704588\|ref\|XP_011655560.1\|	4.9e-42	91.00	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus]	[more]
gi\|764645636\|ref\|XP_011457485.1\|	5.7e-38	80.21	PREDICTED: uncharacterized protein LOC105349460 [Fragaria vesca subsp. vesca]	[more]
gi\|702278098\|ref\|XP_010044812.1\|	3.7e-37	82.47	PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis]	[more]
gi\|1012103459\|ref\|XP_015958005.1\|	8.2e-37	81.19	PREDICTED: uncharacterized protein LOC107482124 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001305	HSP_DnaJ_Cys-rich_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0031072	heat shock protein binding
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G018380.1	CmaCh04G018380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	G3DSA:2.10.230.10		coord: 33..79 score: 2.
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..98 score: 8.1
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..98 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G018380	Cucsa.075710	Cucumber (Gy14) v1	cgycmaB0126
CmaCh04G018380	Csa5G589380	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G018380	MELO3C011864	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G018380	CSPI05G21400	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G018380	CmoCh04G019350	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G018380	CmoCh12G000640	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G018380	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G018380	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cmacpeB756
CmaCh04G018380	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G018380	MELO3C011864.2	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G018380	CsaV3_5G030260	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G018380	Cla97C11G219560	Watermelon (97103) v2	cmawmbB735
CmaCh04G018380	Bhi07G001532	Wax gourd	cmawgoB0891
CmaCh04G018380	Carg19255	Silver-seed gourd	carcmaB0414
CmaCh04G018380	Carg20443	Silver-seed gourd	carcmaB0884

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G018380	CmaCh12G000820	Cucurbita maxima (Rimu)	cmacmaB189

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G018380	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh04G018380	Cucurbita moschata (Rifu)	cmacmoB707
CmaCh04G018380	Watermelon (Charleston Gray)	cmawcgB629
CmaCh04G018380	Watermelon (97103) v1	cmawmB738
CmaCh04G018380	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G018380	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G018380	Silver-seed gourd	carcmaB0971