CsaV3_5G030260 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G030260
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	chaperone protein dnaJ-related
Location	chr5 : 24867204 .. 24868476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCTACATCCACAAAGAGAGAGAGATTTGAAGGGAAAAGAGAGAAGCACCCACGCAAAACCCACTCTTCACTAAACTCCAATTCCCTTCTTCTCTTAAAAACCACCAACTCCTCTCTTTGTCTACGTGTTCTTCCTTCTCACCACTTTCTTCTTTCTTTTCTTTCCTTCCAAATTACATTTATCAAAAATCTCCCAAACTAAATTATTAAAAATTTTAAGAAAATCTCTCATCCATTCCCCCTTCTCTCTCCCCAATCCCTCCCCCATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGATTCACCTTCTCTCTCTCTCTCTCTCACTACTCTAATATTTCCTTATCTTCTTCACCATTAATTATTAGGCCACAACACCATAAAATCAAATCGCCTCTGTAATTTGGGAGTTCTTGTGATTTACTAAGAGCGAATGAGAGGCATTATCGTTTCCCTCAATTCAGATTCGTATATACAAATCTATACTTCTCGTAATTAATTATACTGATTTTGTTAATCATAATTCTTTCTTATTCCTTCTTCTTTTTCTTCTCCCTGAATCTATGTTTCATTATTGCTTCGTTTGATTCGTTGATTATCATTTTTAATTACAACCTGCTGCATTCACTTCATATATATAAATCGGATTAATTGTAATTTTTGGTGTTATGAATTGAATTCATGTTTAAATTATGGAATCTGATGAATCTCTTGATTTGTGGAGAGCAGATTATGCTGAGATTTTCCTCTTTTTCTTTTTGCTATGAATAAATTAATAACGAAAGAATTGATGAACAAGTTGCATATTATAAAATTTGGAGTCAATATTGTTATTTGTCTTTGTGTATATGCAAATTTCCCATTAACTATTTTATTCTTATTGTTATCTATTACTATTATTTTCACATCATATGATCATATCATATAATATATCATTGACTGTGTTTGGTTTTCTATTTATTTTGGTTTCTTCAAAGATATTCTTATCTTAAATAAT

mRNA sequence

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Coding sequence (CDS)

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGCCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Protein sequence

MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIGCRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS

Homology

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_011655560.1 (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus] >KGN51670.1 hypothetical protein Csa_5G589380 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 3.2e-40
Identity = 89/101 (88.12%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
            R           SCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_008446034.1 (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CR    XXXXXXX CGGSGTGRP+P+QIS+RRSNYPSSSS
Sbjct: 61  CRTCSGXXXXXXXXCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_023552719.1 (uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 82/100 (82.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAGSFPRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPVVLTQLATGLSVLAGAVLVKSVMD-KPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CR         X SCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTCSGSGRMFXSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_022151926.1 (uncharacterized protein LOC111019780 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVP+VL+QLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGD+G
Sbjct: 1   MVPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVACLCSRWSDGDVG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSS 100
           CR XXXXXXXXX SCGG+GTGRPIP+Q+SVRR+N+PSSS
Sbjct: 61  CRTXXXXXXXXXSSCGGTGTGRPIPAQLSVRRTNHPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. NCBI nr
Match: XP_022957100.1 (uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 uncharacterized protein LOC111493328 [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 6.9e-35
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CR XXXXXXXXX SCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of CsaV3_5G030260 vs. TAIR10
Match: AT5G43260.1 (chaperone protein dnaJ-related)

HSP 1 Score: 127.1 bits (318), Expect = 6.2e-30
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIV++QLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNG+GRV C CSRWSDGD+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYP 97
          CR    XXXXXXX     GTGRP+P+QI+V+  N P
Sbjct: 61 CRRCSGXXXXXXXXXXXXGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of CsaV3_5G030260 vs. TrEMBL
Match: tr|A0A0A0KPV9|A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 89/101 (88.12%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
            R           SCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of CsaV3_5G030260 vs. TrEMBL
Match: tr|A0A1S3BEY5|A0A1S3BEY5_CUCME (uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPSSSS 101
           CR    XXXXXXX CGGSGTGRP+P+QIS+RRSNYPSSSS
Sbjct: 61  CRTCSGXXXXXXXXCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of CsaV3_5G030260 vs. TrEMBL
Match: tr|A0A2P5BPE6|A0A2P5BPE6_PARAD (Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222020 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-32
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+QLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGD+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPS 98
          CRXXXXXXXXXXX  GGSGTGRPIP+QI+VRR N PS
Sbjct: 61 CRXXXXXXXXXXXXXGGSGTGRPIPAQITVRRPNGPS 97

[Close]

BLAST of CsaV3_5G030260 vs. TrEMBL
Match: tr|F6HGA7|F6HGA7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 0


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+QLATGLSVLAGAVLVKSVMD KPMAG FPRC SCNG+GRV CLCSRWSDGD+G
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYPS 98
          CR   XXXXXXXX CGG+GTGRPIP QIS R    PS
Sbjct: 61 CRTCAXXXXXXXXXCGGTGTGRPIPIQISARPPKRPS 97

[Close]

BLAST of CsaV3_5G030260 vs. TrEMBL
Match: tr|Q6XPS8|Q6XPS8_9FABA (Drought-induced protein 1 OS=Glycine latifolia OX=45691 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-30
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M P+VLSQLATGLSVLAGAVLVKSVMD KPMAG F RCP+CNG+GRV CLCSRWSDGD+G
Sbjct: 1  MGPMVLSQLATGLSVLAGAVLVKSVMDQKPMAGPFSRCPTCNGTGRVTCLCSRWSDGDVG 60

Query: 61 CRXXXXXXXXXXXSCGGSGTGRPIPSQISVRRSNYP 97
          C            SCGGSGTGRP+P++I++R  N P
Sbjct: 61 CSTYAGSGRMACSSCGGSGTGRPLPAKIAIRPPNRP 96

The following BLAST results are available for this feature:

BLAST of CsaV3_5G030260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655560.1	3.2e-40	88.12	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus] >KGN51670.1 hy...	[more]
XP_008446034.1	3.5e-39	91.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
XP_023552719.1	1.1e-35	82.00	uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo]	[more]
XP_022151926.1	3.1e-35	85.86	uncharacterized protein LOC111019780 [Momordica charantia]	[more]
XP_022957100.1	6.9e-35	90.00	uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 unchar...	[more]

BLAST of CsaV3_5G030260 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	6.2e-30	69.79	chaperone protein dnaJ-related	[more]

BLAST of CsaV3_5G030260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G030260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPV9\|A0A0A0KPV9_CUCSA	2.1e-40	88.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1	[more]
tr\|A0A1S3BEY5\|A0A1S3BEY5_CUCME	2.3e-39	91.00	uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=...	[more]
tr\|A0A2P5BPE6\|A0A2P5BPE6_PARAD	6.1e-32	86.60	Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia a...	[more]
tr\|F6HGA7\|F6HGA7_VITVI	4.4e-30	80.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0010g03640 PE=4 SV=...	[more]
tr\|Q6XPS8\|Q6XPS8_9FABA	7.5e-30	69.79	Drought-induced protein 1 OS=Glycine latifolia OX=45691 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G030260.1	CsaV3_5G030260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..101
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..95
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G030260	CSPI05G21400	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G030260	Cucsa.075710	Cucumber (Gy14) v1	cgycucB076
CsaV3_5G030260	CmaCh12G000820	Cucurbita maxima (Rimu)	cmacucB0218
CsaV3_5G030260	CmaCh04G018380	Cucurbita maxima (Rimu)	cmacucB0886
CsaV3_5G030260	CmoCh04G019350	Cucurbita moschata (Rifu)	cmocucB0875
CsaV3_5G030260	CmoCh12G000640	Cucurbita moschata (Rifu)	cmocucB0206
CsaV3_5G030260	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	cpecucB0544
CsaV3_5G030260	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cpecucB1030
CsaV3_5G030260	Carg19255	Silver-seed gourd	carcucB0331
CsaV3_5G030260	Carg20443	Silver-seed gourd	carcucB0658
CsaV3_5G030260	MELO3C011864	Melon (DHL92) v3.5.1	cucmeB381
CsaV3_5G030260	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	cuclsiB393
CsaV3_5G030260	MELO3C011864.2	Melon (DHL92) v3.6.1	cucmedB375
CsaV3_5G030260	Cla97C11G219560	Watermelon (97103) v2	cucwmbB373
CsaV3_5G030260	Bhi07G001532	Wax gourd	cucwgoB523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G030260	Silver-seed gourd	carcucB0730
CsaV3_5G030260	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G030260	Cucurbita maxima (Rimu)	cmacucB0495
CsaV3_5G030260	Cucurbita moschata (Rifu)	cmocucB0488
CsaV3_5G030260	Cucurbita pepo (Zucchini)	cpecucB0051
CsaV3_5G030260	Watermelon (Charleston Gray)	cucwcgB375
CsaV3_5G030260	Watermelon (97103) v1	cucwmB458