Carg19255 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19255
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	chaperone protein dnaJ-related
Location	Cucurbita_argyrosperma_scaffold_137 : 20000 .. 20299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

mRNA sequence

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

Coding sequence (CDS)

ATGGTTCCGATCGTCCTCACCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTGATGGACAAACCCATGGCCGGCTCCTCCCCCCGCTGCCCCTCCTGCAACGGCACCGGTCGAGTCCCCTGCCTCTGCTCCCGCTGGTCCGACCGCGACATCGGCTGCCGTACCTGCTCTGGCTCCGGCCGCATGTTCTGCAGCAGCTGCGGTGGCTCTGGCACCGGCCGCCCCATCCCCGCCCAAATCTCCGTCCGCCGTACCAACTATCCCCCCTCTTCCTCCTGA

Protein sequence

MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGCRTCSGSGRMFCSSCGGSGTGRPIPAQISVRRTNYPPSSS

Homology

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_022957100.1 (uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 uncharacterized protein LOC111493328 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_023552719.1 (uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 8.1e-41
Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGC 60
           MVP+VLTQLATGLSVLAGAVLVKSVMDKPMAGS PRCPSCNGTGRVPCLCSRWSDRDIGC
Sbjct: 1   MVPVVLTQLATGLSVLAGAVLVKSVMDKPMAGSFPRCPSCNGTGRVPCLCSRWSDRDIGC 60

Query: 61  RTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           RT        XSSCGGSGTGRPIPAQISVRRTNYPPSSS
Sbjct: 61  RTCSGSGRMFXSSCGGSGTGRPIPAQISVRRTNYPPSSS 99

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BLAST of Carg19255 vs. NCBI nr
Match: XP_008446034.1 (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 3.9e-35
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRT   XXXXXX  CGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGXXXXXXXXCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_011655560.1 (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus] >KGN51670.1 hypothetical protein Csa_5G589380 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 8.7e-35
Identity = 82/100 (82.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RT         SSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. NCBI nr
Match: XP_022151926.1 (uncharacterized protein LOC111019780 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          MVP+VLTQLATGLSVLAGAVLVKSVMD KPMAG  PRCPSCNGTGRV CLCSRWSD D+G
Sbjct: 1  MVPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVACLCSRWSDGDVG 60

Query: 61 CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSS 99
          CRTXXXXXXXXXSSCGG+GTGRPIPAQ+SVRRTN+P SS
Sbjct: 61 CRTXXXXXXXXXSSCGGTGTGRPIPAQLSVRRTNHPSSS 99

[Close]

BLAST of Carg19255 vs. TAIR10
Match: AT5G43260.1 (chaperone protein dnaJ-related)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIV+TQLATG+SVLAGAV +KSVMD KPMAG  PRCP+CNGTGRV C CSRWSD D+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYP 96
          CR    XXXXXX      GTGRP+PAQI+V+  N P
Sbjct: 61 CRRCSGXXXXXXXXXXXXGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of Carg19255 vs. TrEMBL
Match: tr|A0A1S3BEY5|A0A1S3BEY5_CUCME (uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-35
Identity = 87/100 (87.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNGTGRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
           CRT   XXXXXX  CGGSGTGRP+PAQIS+RR+NYP SSS
Sbjct: 61  CRTCSGXXXXXXXXCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. TrEMBL
Match: tr|A0A0A0KPV9|A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35
Identity = 82/100 (82.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
           MVPIVL+QLATGLSVLAGAVLVKSVMD KPMAGS PRCPSCNG+GRVPCLCSRWSD DIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSSS 100
            RT         SSCGGSGTGRPIP+QISVRR+NYP SSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 100

[Close]

BLAST of Carg19255 vs. TrEMBL
Match: tr|A0A2P6R0H4|A0A2P6R0H4_ROSCH (Putative Heat shock protein DnaJ, cysteine-rich OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0430231 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.6e-31
Identity = 75/96 (78.12%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 3  PIVLTQLATGLSVLAGAVLVKSVMDKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIGCRT 62
          PIVLTQ+A GL VLAGA +VKS+MDKPMAG  PRCPSCNGTGRV CLC RWSD D+GCRT
Sbjct: 4  PIVLTQIAQGLGVLAGAAIVKSLMDKPMAGPFPRCPSCNGTGRVSCLCKRWSDGDVGCRT 63

Query: 63 XXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYPPSS 99
            XXXXXXX SCGGSGTGRP+P Q+SVRR N PP S
Sbjct: 64 CSXXXXXXXXSCGGSGTGRPLPVQLSVRRQNPPPGS 99

[Close]

BLAST of Carg19255 vs. TrEMBL
Match: tr|A0A2P5BPE6|A0A2P5BPE6_PARAD (Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222020 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 82/96 (85.42%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVMD-KPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQLATGLSVLAGAVLVKSVMD KPMAG  PRCPSCNGTGRV CLCSRWSD D+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYP 96
          CR XXXXXXXXX   GGSGTGRPIPAQI+VRR N P
Sbjct: 61 CRXXXXXXXXXXXXXGGSGTGRPIPAQITVRRPNGP 96

[Close]

BLAST of Carg19255 vs. TrEMBL
Match: tr|B9GML0|B9GML0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G056600v3 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 75/96 (78.12%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MVPIVLTQLATGLSVLAGAVLVKSVM-DKPMAGSSPRCPSCNGTGRVPCLCSRWSDRDIG 60
          M PIVLTQLATGLSVLAGAVLVKSVM  KPMAG  P CPSCNGT RV CLCSRWSDRD+G
Sbjct: 1  MEPIVLTQLATGLSVLAGAVLVKSVMGQKPMAG--PTCPSCNGTRRVACLCSRWSDRDVG 60

Query: 61 CRTXXXXXXXXXSSCGGSGTGRPIPAQISVRRTNYP 96
          CRT      XXXSSCGG+GTGRPIP QIS+R  N P
Sbjct: 61 CRTCSGSGRXXXSSCGGTGTGRPIPVQISMRSPNRP 94

The following BLAST results are available for this feature:

BLAST of Carg19255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957100.1	1.3e-41	100.00	uncharacterized protein LOC111458584 [Cucurbita moschata] >XP_022998762.1 unchar...	[more]
XP_023552719.1	8.1e-41	89.90	uncharacterized protein LOC111810279 [Cucurbita pepo subsp. pepo]	[more]
XP_008446034.1	3.9e-35	87.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
XP_011655560.1	8.7e-35	82.00	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus] >KGN51670.1 hy...	[more]
XP_022151926.1	2.5e-34	88.89	uncharacterized protein LOC111019780 [Momordica charantia]	[more]

BLAST of Carg19255 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	1.3e-27	69.79	chaperone protein dnaJ-related	[more]

BLAST of Carg19255 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19255 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BEY5\|A0A1S3BEY5_CUCME	2.6e-35	87.00	uncharacterized protein LOC103488885 OS=Cucumis melo OX=3656 GN=LOC103488885 PE=...	[more]
tr\|A0A0A0KPV9\|A0A0A0KPV9_CUCSA	5.8e-35	82.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589380 PE=4 SV=1	[more]
tr\|A0A2P6R0H4\|A0A2P6R0H4_ROSCH	8.6e-31	78.13	Putative Heat shock protein DnaJ, cysteine-rich OS=Rosa chinensis OX=74649 GN=Rc...	[more]
tr\|A0A2P5BPE6\|A0A2P5BPE6_PARAD	2.8e-29	85.42	Heat shock protein DnaJ, cysteine-rich domain containing protein OS=Parasponia a...	[more]
tr\|B9GML0\|B9GML0_POPTR	1.8e-28	78.13	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G056600v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19255-RA	Carg19255-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..99
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19255	Csa5G589380	Cucumber (Chinese Long) v2	carcuB0325
Carg19255	MELO3C011864	Melon (DHL92) v3.5.1	carmeB0299
Carg19255	CSPI05G21400	Wild cucumber (PI 183967)	carcpiB0331
Carg19255	Cucsa.075710	Cucumber (Gy14) v1	carcgyB0351
Carg19255	CmaCh04G018380	Cucurbita maxima (Rimu)	carcmaB0414
Carg19255	CmoCh04G019350	Cucurbita moschata (Rifu)	carcmoB0409
Carg19255	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	carlsiB275
Carg19255	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	carcpeB0414
Carg19255	MELO3C011864.2	Melon (DHL92) v3.6.1	carmedB0310
Carg19255	CsaV3_5G030260	Cucumber (Chinese Long) v3	carcucB0331
Carg19255	Cla97C11G219560	Watermelon (97103) v2	carwmbB0308
Carg19255	Bhi07G001532	Wax gourd	carwgoB0387

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19255	Cucumber (Gy14) v2	carcgybB0311
Carg19255	Watermelon (Charleston Gray)	carwcgB0291
Carg19255	Watermelon (97103) v1	carwmB0293