Csa5G589380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G589380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Drought-induced protein
Location	Chr5 : 21154867 .. 21155428 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATTAAAAATTTTAAGAAAATCTCTCATCCATTCCCCCTTCTCTCTCCCCAATCCCTCCCCCATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGGCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGATTCACCTTCTCTCTCTCTCTCTCTCACTACTCTAATATTTCCTTATCTTCTTCACCATTAATTATTAGGCCACAACACCATAAAATCAAATCGCCTCTGTAATTTGGGAGTTCTTGTGATTTACTAAGAGCGAATGAGAGGCATTATCGTTTCCCTCAATTCAGATTCGTATATACAAATCTATACTTCTC

mRNA sequence

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGGCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Coding sequence (CDS)

ATGGTTCCCATCGTCCTCTCCCAACTCGCCACCGGCCTCAGCGTCCTCGCCGGCGCCGTCCTCGTCAAATCCGTCATGGACCACAAGCCCATGGCCGGCTCCTTCCCCCGCTGCCCTTCCTGCAACGGCTCTGGCCGCGTCCCCTGTCTCTGCTCCCGCTGGTCCGACGGCGACATCGGCTGGCGTACCTGCTCCGGCTCTGGTCGTATGTTCTGCAGCAGCTGTGGCGGCTCCGGCACCGGCCGCCCTATTCCATCTCAAATCTCCGTTCGTCGATCCAATTACCCTTCCTCTTCTTCTTCCTGA

Protein sequence

MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIGWRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS*

Homology

[Close]

BLAST of Csa5G589380 vs. TrEMBL
Match: A0A0A0KPV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
           WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of Csa5G589380 vs. TrEMBL
Match: W9RCB8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-40
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+Q+ATGLSVL GAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGDIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPS 98
           RTC+GSGRM CSSCGGSGTGRPI +QISVRR N PS
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGPS 97

[Close]

BLAST of Csa5G589380 vs. TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-39
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+QLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNG+GRV C+CSRWSDGD+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYP 97
           RTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTP 96

[Close]

BLAST of Csa5G589380 vs. TrEMBL
Match: G7JBY8_MEDTR (Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-39
Identity = 80/98 (81.63%), Postives = 89/98 (90.82%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAG-SFPRCPSCNGSGRVPCLCSRWSDGDI 60
          M P+V+SQLATGLSVLAGAVLVK VMD KPMAG SFPRCPSCNG+GRVPCLCSRWSDGDI
Sbjct: 1  MGPLVISQLATGLSVLAGAVLVKQVMDQKPMAGPSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 61 GWRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPS 98
          G  TCSGSGRM CSSCGGSGTGRP+P++I++R +N PS
Sbjct: 61 GCSTCSGSGRMGCSSCGGSGTGRPLPARITIRPTNRPS 98

[Close]

BLAST of Csa5G589380 vs. TrEMBL
Match: F6HGA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-38
Identity = 79/97 (81.44%), Postives = 84/97 (86.60%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+QLATGLSVLAGAVLVKSVMD KPMAG FPRC SCNG+GRV CLCSRWSDGD+G
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPS 98
           RTC+GSGRM CSSCGG+GTGRPIP QIS R    PS
Sbjct: 61 CRTCAGSGRMACSSCGGTGTGRPIPIQISARPPKRPS 97

[Close]

BLAST of Csa5G589380 vs. TAIR10
Match: AT5G43260.1 (AT5G43260.1 chaperone protein dnaJ-related)

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-40
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIV++QLATG+SVLAGAV +KSVMD KPMAG FPRCP+CNG+GRV C CSRWSDGD+G
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYP 97
           R CSGSGR  CS+CGGSGTGRP+P+QI+V+  N P
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

[Close]

BLAST of Csa5G589380 vs. NCBI nr
Match: gi|778704588|ref|XP_011655560.1| (PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 102
           WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS
Sbjct: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSSS 101

[Close]

BLAST of Csa5G589380 vs. NCBI nr
Match: gi|659090468|ref|XP_008446034.1| (PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.5e-49
Identity = 95/100 (95.00%), Postives = 99/100 (99.00%), Query Frame = 1


Query: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
           MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNG+GRVPCLCSRWSDGDIG
Sbjct: 1   MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGTGRVPCLCSRWSDGDIG 60

Query: 61  WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPSSSS 101
            RTCSGSGRMFCSSCGGSGTGRP+P+QIS+RRSNYPSSSS
Sbjct: 61  CRTCSGSGRMFCSSCGGSGTGRPLPAQISLRRSNYPSSSS 100

[Close]

BLAST of Csa5G589380 vs. NCBI nr
Match: gi|502135321|ref|XP_004502293.1| (PREDICTED: uncharacterized protein LOC101507616 [Cicer arietinum])

HSP 1 Score: 174.5 bits (441), Expect = 9.6e-41
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M P+VLSQLATGLSVLAGAVLVKSVMD KPMAG FPRCPSCNG+GRVPCLCSRWSDGD+G
Sbjct: 1  MGPLVLSQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVPCLCSRWSDGDVG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPS 98
            TC+GSGRM CSSCGGSGTGRP+P++I++R SN PS
Sbjct: 61 CSTCAGSGRMGCSSCGGSGTGRPLPARIAIRPSNRPS 97

[Close]

BLAST of Csa5G589380 vs. NCBI nr
Match: gi|703112866|ref|XP_010100228.1| (hypothetical protein L484_001360 [Morus notabilis])

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-40
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+Q+ATGLSVL GAVLVKSVMD KPMAG FPRCPSCNG+GRV CLCSRWSDGDIG
Sbjct: 1  MEPIVLTQVATGLSVLVGAVLVKSVMDQKPMAGPFPRCPSCNGTGRVTCLCSRWSDGDIG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYPS 98
           RTC+GSGRM CSSCGGSGTGRPI +QISVRR N PS
Sbjct: 61 CRTCAGSGRMGCSSCGGSGTGRPITAQISVRRPNGPS 97

[Close]

BLAST of Csa5G589380 vs. NCBI nr
Match: gi|702278098|ref|XP_010044812.1| (PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 1


Query: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60
          M PIVL+QLATGLSVLAGA LVKSVMD KPMAG FPRCPSCNG+GRV C+CSRWSDGD+G
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQKPMAGPFPRCPSCNGTGRVACMCSRWSDGDVG 60

Query: 61 WRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYP 97
           RTC+GSGRM CSSCGG+GTGRP+P Q+SVRR N P
Sbjct: 61 CRTCAGSGRMGCSSCGGTGTGRPLPVQLSVRRPNTP 96

The following BLAST results are available for this feature:

BLAST of Csa5G589380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPV9_CUCSA	1.0e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589380 PE=4 SV=1	[more]
W9RCB8_9ROSA	2.5e-40	84.54	Uncharacterized protein OS=Morus notabilis GN=L484_001360 PE=4 SV=1	[more]
A0A059D890_EUCGR	1.3e-39	81.25	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1	[more]
G7JBY8_MEDTR	1.6e-39	81.63	Chaperone dnaJ-like protein OS=Medicago truncatula GN=MTR_3g085300 PE=4 SV=1	[more]
F6HGA7_VITVI	1.4e-38	81.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03640 PE=4 SV=...	[more]

BLAST of Csa5G589380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43260.1	5.1e-40	73.96	chaperone protein dnaJ-related	[more]

BLAST of Csa5G589380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704588\|ref\|XP_011655560.1\|	1.4e-52	100.00	PREDICTED: uncharacterized protein LOC105435558 [Cucumis sativus]	[more]
gi\|659090468\|ref\|XP_008446034.1\|	2.5e-49	95.00	PREDICTED: uncharacterized protein LOC103488885 [Cucumis melo]	[more]
gi\|502135321\|ref\|XP_004502293.1\|	9.6e-41	82.47	PREDICTED: uncharacterized protein LOC101507616 [Cicer arietinum]	[more]
gi\|703112866\|ref\|XP_010100228.1\|	3.7e-40	84.54	hypothetical protein L484_001360 [Morus notabilis]	[more]
gi\|702278098\|ref\|XP_010044812.1\|	1.8e-39	81.25	PREDICTED: uncharacterized protein LOC104433676 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G589380.1	Csa5G589380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..99 score: 7.1
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..99 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G589380	MELO3C011864	Melon (DHL92) v3.5.1	cumeB377
Csa5G589380	Lsi04G006840	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G589380	MELO3C011864.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G589380	Cla97C11G219560	Watermelon (97103) v2	cuwmbB357
Csa5G589380	Bhi07G001532	Wax gourd	cuwgoB512
Csa5G589380	CSPI05G21400	Wild cucumber (PI 183967)	cpicuB239
Csa5G589380	Cucsa.075710	Cucumber (Gy14) v1	cgycuB073
Csa5G589380	CmaCh12G000820	Cucurbita maxima (Rimu)	cmacuB189
Csa5G589380	CmaCh04G018380	Cucurbita maxima (Rimu)	cmacuB749
Csa5G589380	CmoCh04G019350	Cucurbita moschata (Rifu)	cmocuB739
Csa5G589380	CmoCh12G000640	Cucurbita moschata (Rifu)	cmocuB173
Csa5G589380	Cp4.1LG01g16170	Cucurbita pepo (Zucchini)	cpecuB440
Csa5G589380	Cp4.1LG07g00760	Cucurbita pepo (Zucchini)	cpecuB836
Csa5G589380	Carg20443	Silver-seed gourd	carcuB0648
Csa5G589380	Carg19255	Silver-seed gourd	carcuB0325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G589380	Cucurbita maxima (Rimu)	cmacuB413
Csa5G589380	Cucurbita moschata (Rifu)	cmocuB407
Csa5G589380	Watermelon (Charleston Gray)	cuwcgB352
Csa5G589380	Watermelon (97103) v1	cuwmB432
Csa5G589380	Cucurbita pepo (Zucchini)	cpecuB047
Csa5G589380	Cucumber (Gy14) v2	cgybcuB223
Csa5G589380	Silver-seed gourd	carcuB0713