Lsi04G000260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G000260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLateral root primordium protein-related, putative
Locationchr04 : 376678 .. 379572 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAAATGAGAGAGATAGGTGAAGTGGCGTCTCCTTTTGAAATCAAAATACAGAATTTTGAGTCGGCATAGCCATTATTTATAGTTATTCCCTTCTTCTCAAGCTAAAACAACTTTGACACTGCAGAGTTTGAAGAATCATTCATTCCACTCACCCCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCCTTCTTCCTTCTCTCTCTCGCTCTCTCTCTTTCTTTCTCTTTCTCCTCTGTTACTGTGAAATGAGAGAGAATTCCATTCCATTAACACAGCTACAGAATTGCTTTTGGTGTAAGAAATTTCTTCTTTTTCCCAACACAAACACCCACTGCATAATCCCCACATCCCATAAAACTAACTCCCAATTTCATCATTTAAACACTGTTTTTACCCCTCTCAACCCAAATCATAAACACTCTCTTTCAATCTGAATCAATCTTCTTCAAATTTCAACAGCTTTTTTCTTTTTGTTTTTTGGATCAACAGAACACAAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACGCCTTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCGCCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGCCACAGGCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTTGTCGGGGTTTGGAACATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGTTGATCGGCGGTGGAGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGCTAGTGGCGACGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCCGCCGTCGCCGCCGCTTCCACTTCTAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGGTAAATCTCTCTCTAACTCTCTCTTTCCATTCTTGTTTTCTTGTGTTTCTGAATGAATTCAGAATCATGAGCAGCAATAATGAGATATTTGTTTACTCTGTTTCTCTCTGTGTAATGATTTGGTTACTTGTTTCTTTTTGTATAATGTAAGATTAGTGGAAATACATTCTTATTCAGTTTCAAATTTGTAAGACTTTTATGAGTTGTTTTGATTTTATTTCTCTTTAAAGATCTTGCAGCAAATTTGCACATTTTCCTGAAGTTATTAACTAAACATGTTCATAAATACATATTCATTACGTATGTTGTTGGAAAACTTACAATCCTTTCATGTTTCTTTCTCTGTTTTCCTCTTCCTTCTCTCTCTCCTTTCTCCAACAAGGAGGGAGTTACTTGTATATACTAGTCGAATCTAGGATCAGTTGGAAATGACTTGTGAGTGTTTAAAAAAAATGTTTTTTTAAACCTTAAAAAGGGGTTTAAGTATTTAGAAAGTCATTCCGGCTTTATATATTCGGTTGAGTGGATTCATTTTTCTTGCTCAAATCTGTTCTTTAACTGTTTTGTTAACAAAAAGATCCTTTTCTAAAACCACCTCTTGGAATTCTCATGACTTTGAAACCAGATGCAAGCTTCAAGAAGTCGTTGCCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGGGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAACCACAACAGGGAATAGACATTCCTTCTCTTCGTTCTTCTCCAATTCTCCCTCTGTCACTCTCCTCCTCCTCCCGAAAACTTGGTCTCGGCCGCTCGAGAAAATATGATATCTCTGCTAGATTTCAGTGGTCTGTTATGCTATCTATAAGTTCTATATAGTTGTTATCACGGTGGTAATGCAATGAATGTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTATAGTCCTTCTAGTCTTAAGCTAAGTTTAGTGTAAGATCTCAAGTTCAATGATAGTTGGATACCGATCATCTGTATATTGCTAAGATGTGTAACTTTCATCCATCCGAATATCTGCTGAAGCAAGCTAGCTTTTCCTATCTCATAGCAGCTGTATTATATGTTGGAATACAAGAGTTTAAAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTTATGAAACGAATGAAATCGTTCGTCTTCGAAAATAGAACATCGGGCATCTTCCTGTGAGAGGCCACCATGATGGAACAGGCAAAATGTATGTAATGCCTTCCTCTTTCTACATTACTATCATTTGTCTTCATCTTAGAACATTTTCACTGATTTGGATCTTCTCCAATTATGAGAGGGCTTCATTAAATGGAAGTCATTTATTTGATTGAGACGACTTCGATGGTGAATATGTAGCGAGAACCCGAATAAGTAAAATCAGACCCCACATGAACGATATAAGTAGAAGATGAAAGTAACTGAACTGTAGTTCCATTTCATCACATTTTTAGCAAAAGAAAGCAGGGCAATGGAGAAGAGGAAAACAGTGTAACAATTACCA

mRNA sequence

AGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAAAATGAGAGAGATAGGTGAAGTGGCGTCTCCTTTTGAAATCAAAATACAGAATTTTGAGTCGGCATAGCCATTATTTATAGTTATTCCCTTCTTCTCAAGCTAAAACAACTTTGACACTGCAGAGTTTGAAGAATCATTCATTCCACTCACCCCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCCTTCTTCCTTCTCTCTCTCGCTCTCTCTCTTTCTTTCTCTTTCTCCTCTGTTACTGTGAAATGAGAGAGAATTCCATTCCATTAACACAGCTACAGAATTGCTTTTGGTAACACAAACAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACGCCTTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCGCCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGCCACAGGCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTTGTCGGGGTTTGGAACATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGTTGATCGGCGGTGGAGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGCTAGTGGCGACGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCCGCCGTCGCCGCCGCTTCCACTTCTAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTGCCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGGGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAACCACAACAGGGAATAGACATTCCTTCTCTTCGTTCTTCTCCAATTCTCCCTCTGTCACTCTCCTCCTCCTCCCGAAAACTTGGTCTCGGCCGCTCGAGAAAATATGATATCTCTGCTAGATTTCAGTGGTCTGTTATGCTATCTATAAGTTCTATATAGTTGTTATCACGGTGGTAATGCAATGAATGTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGATTTTTCTGTTCTATAGTCCTTCTAGTCTTAAGCTAAGTTTAGTGTAAGATCTCAAGTTCAATGATAGTTGGATACCGATCATCTGTATATTGCTAAGATGTGTAACTTTCATCCATCCGAATATCTGCTGAAGCAAGCTAGCTTTTCCTATCTCATAGCAGCTGTATTATATGTTGGAATACAAGAGTTTAAAATCTCTTCTTTGACTGTCTATCTCGAAAAGTTTTTATGAAACGAATGAAATCGTTCGTCTTCGAAAATAGAACATCGGGCATCTTCCTGTGAGAGGCCACCATGATGGAACAGGCAAAATGTATGTAATGCCTTCCTCTTTCTACATTACTATCATTTGTCTTCATCTTAGAACATTTTCACTGATTTGGATCTTCTCCAATTATGAGAGGGCTTCATTAAATGGAAGTCATTTATTTGATTGAGACGACTTCGATGGTGAATATGTAGCGAGAACCCGAATAAGTAAAATCAGACCCCACATGAACGATATAAGTAGAAGATGAAAGTAACTGAACTGTAGTTCCATTTCATCACATTTTTAGCAAAAGAAAGCAGGGCAATGGAGAAGAGGAAAACAGTGTAACAATTACCA

Coding sequence (CDS)

ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCGACGCCTTCTTCTCTTCACCAACAGACCCAAATCATTTCTTCCGATCATCATCCATCTCTTCCTCTGCCGTCCTCCGCCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCGCCACAGGCCCCGCCCAATCAGACGGCTGACGATGGTAGCGAGCGTTGTCGGGGTTTGGAACATCTGAAGAGAACCCAGGATTTTGGGTTTGGGAAAGGGGATTCGTTGATCGGCGGTGGAGGAAATAATGGCTCCGACGAACAAGTGAAAGGCGACGGCGGGGATGGGTCTATGGCAGTGTGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCGGCTCGGCGCCGTGAGCGGCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGCTAGTGGCGACGGAGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCCGCCGTCGCCGCCGCTTCCACTTCTAATGCCACCACTCCCCGGAGCTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCGTTGCCGGGGCATGTTCGGGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGGGGTCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAACCACAACAGGGAATAG

Protein sequence

MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNHNRE
Homology
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BLAST of Lsi04G000260 vs. Swiss-Prot
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-55
Identity = 146/312 (46.79%), Postives = 183/312 (58.65%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQ 60
           M+GLRDV  +AP     HQ   +IS   H +    ++AALGV  G+ PLL A        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGV--GVIPLLTA-------- 62

Query: 61  APPNQTADDG-------SERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGD 120
             P Q  +D        + R +   +   TQ   F   +    G  +N S     G G  
Sbjct: 63  GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGS---GSGAS 122

Query: 121 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 180
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 123 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT----- 182

Query: 181 TASGDGGSSGSSSAGAKRPRVL---IPSQSAAVAAASTSNATTPRSFETTSSHQDAS-FK 240
            A+   GSS S+S+G K+PR++      Q  A +  STSN T P+SFET+SS QD    +
Sbjct: 183 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 242

Query: 241 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 300
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 243 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 292

[Close]
BLAST of Lsi04G000260 vs. Swiss-Prot
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-32
Identity = 80/163 (49.08%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 119 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 178
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 179 GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 238
           GG SGS  AG       IP +        TS+++   S        +ASF    PG V +
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASF----PGEVSS 213

Query: 239 PAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 281
            A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 DALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Lsi04G000260 vs. Swiss-Prot
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.8e-32
Identity = 78/173 (45.09%), Postives = 100/173 (57.80%), Query Frame = 1 

Query: 118 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 177
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS--------------- 99

Query: 178 DGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 237
                 SSS   ++ ++ I  QS+   +             TT+S Q+  F++ LPG + 
Sbjct: 100 ------SSSPSERKKKLKIDKQSSPNVSL----------LPTTTSRQERGFREGLPGKIE 159

Query: 238 APAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 290
           APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 APAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of Lsi04G000260 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 5.5e-28
Identity = 78/190 (41.05%), Postives = 102/190 (53.68%), Query Frame = 1 

Query: 91  GDSLIGGGGNNGSDEQVK--GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCST 150
           G++   G G   +   ++  G GG      C+DCGN+AKK+C + RCRTCCK RG  CST
Sbjct: 114 GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECST 173

Query: 151 HVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAAST 210
           HV+STWVPAA+RRERQ  +      T    G S        KR R  +P+ S+++     
Sbjct: 174 HVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCT-- 233

Query: 211 SNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGH 270
                        SH       + P  V + AVFRC RV+++  GE E AYQ  V+IGGH
Sbjct: 234 ----------RIPSHSGLEV-GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGH 284

Query: 271 VFKGFLYDQG 279
           +FKG LYD G
Sbjct: 294 IFKGILYDLG 284

[Close]
BLAST of Lsi04G000260 vs. Swiss-Prot
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.0e-27
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = 1 

Query: 119 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 178
           C+DCGN+AKK+C + RCRTCCK RG HC THVKSTWVPAA+RRER     +  +A+    
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER-----LAQLASLQHH 184

Query: 179 GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKS--LPGHV 238
             SS   +  AKR R      +      S    +   +    +++ ++  + S  LP  V
Sbjct: 185 SASS-RETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEV 244

Query: 239 RAPAVFRCHRVTAISSGEGE--LAYQATVNIGGHVFKGFLYDQGADDKN 284
            +PA+FRC RV++I   E +   AYQ  VNIGGH+FKG LYDQG + ++
Sbjct: 245 NSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQD 287

[Close]
BLAST of Lsi04G000260 vs. TrEMBL
Match: A0A0A0KWX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 1.2e-151
Identity = 280/303 (92.41%), Postives = 287/303 (94.72%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  APPNQ-TADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGDGSMAVC 120
            PPN  T DD ++R R  ++LKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQS-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQS AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 NRE 302
           +RE
Sbjct: 301 HRE 303

[Close]
BLAST of Lsi04G000260 vs. TrEMBL
Match: G7J0K6_MEDTR (LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_3g014660 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 9.4e-67
Identity = 156/309 (50.49%), Postives = 196/309 (63.43%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSL---HQQTQI--------ISSDHHPSLPLPSSAALGVSVGIFPL 60
           MLGLRD++ IAP+PSSL   HQQ Q         IS DH+ +  LPSSA+L V  GIFPL
Sbjct: 3   MLGLRDLVLIAPSPSSLQHHHQQNQNQNQNQNQPISHDHNSNHSLPSSASLSVGFGIFPL 62

Query: 61  LAATPCLPPPQAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKG 120
           L ATPC+P  Q+  N+  ++ S       +L+   +        +I    N+G    ++ 
Sbjct: 63  LTATPCMPQQQSQNNEVQENPSNN-NNFWNLRMCPEVVNLPKKGVITEEENHGKIAMMES 122

Query: 121 D--GGDGS-MAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQML 180
           +  G  GS   VC+DCGNRAKK+C +RRCRTCCKGRG  CSTH+KSTW+P+ RRRER++ 
Sbjct: 123 EENGVYGSEYRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVE 182

Query: 181 VVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ--SAAVAAASTSNATTPRSFETTSSHQ 240
           +           GG  G   +G KR + L+ S   +AA + +S SN TTP+SF T+S HQ
Sbjct: 183 MFA---------GGGDGEGCSGVKRQKGLLGSSQNAAATSHSSNSNGTTPKSFATSSCHQ 242

Query: 241 DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNA 294
           DA FK+ LPGHV APAVFRCHRVTAI +GE E AY ATV+I GHVFKGFLYD G D KN 
Sbjct: 243 DAGFKEGLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKNP 301

[Close]
BLAST of Lsi04G000260 vs. TrEMBL
Match: G7LG16_MEDTR (LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_8g039110 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-66
Identity = 169/317 (53.31%), Postives = 203/317 (64.04%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLH-QQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPP 60
           MLGLRD++ IA TPSSLH QQ Q ISSDH+P+LPLPSS+AL V +GIFPLL  T   P  
Sbjct: 3   MLGLRDLVLIAQTPSSLHNQQNQTISSDHNPNLPLPSSSALSVGLGIFPLLTTTH--PHH 62

Query: 61  QAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVK----GDGGDGS 120
           Q P N   +D   +     +LK  Q       +S          D + K    G   +G 
Sbjct: 63  QNPNNNNNNDNIHQDSNFWNLKMCQPQQVMMMNSSRKRVEEEDDDVRNKNLMMGCEENGE 122

Query: 121 MAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATA 180
             VC+DCGNRAKK+C Y+RCRTCCKGRG  CSTHVKSTW+PA+ RR+R M+V       A
Sbjct: 123 FRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVV-------A 182

Query: 181 SGDGGSSGSSSAGAKRPRVLIPSQSAAVAA---ASTSNATT-PRSFE---TTSSHQDASF 240
            G G S G +S+G KR ++L+ S    VAA   +S+SNA T  RS     T+S HQD  F
Sbjct: 183 EG-GDSDGGASSGTKRQKILMTSSQNNVAANSHSSSSNAATRTRSLSLDITSSCHQDPGF 242

Query: 241 KKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN-AFPS 300
           K++LP +VRAPAVF+CHRV+AI +GE ELAY ATVNI GHVFKGFLYDQG DDKN   P 
Sbjct: 243 KQTLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGVDDKNETMPC 302

Query: 301 ISHLHL---ESGNHNRE 302
           +S L L    SG  NRE
Sbjct: 303 VSELQLGSNGSGKSNRE 309

[Close]
BLAST of Lsi04G000260 vs. TrEMBL
Match: A0A0D2Q8N8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G123900 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.6e-66
Identity = 157/320 (49.06%), Postives = 196/320 (61.25%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPS---------SAALGVSVGIFPLLA 60
           M+GLRD + +AP   + H         HH   P+ S         S ALGV VG+FPLL 
Sbjct: 3   MVGLRDFVVVAPASFNHHHHHH---HHHHTQDPIMSNDQISGPSASTALGVGVGVFPLLT 62

Query: 61  ATPCLPPPQAP-PNQTADDGSERCRGLE-----------HLKRTQDFGFGKGDS---LIG 120
           A PCL P     P+   ++G  +  G++           +LK+   F      S   LI 
Sbjct: 63  AAPCLAPLNVEDPDLFNNNGRTKLSGMQLWQDQNSSPHNYLKKPSSFPDSNNSSSMNLIQ 122

Query: 121 GGGNNGSDEQVKGDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVP 180
             G  G  ++  G  G  S   C+DCGN+AKK+C +RRCRTCCK RG  C THVKSTWVP
Sbjct: 123 SSGGGGMGDRESGGSGSSSATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWVP 182

Query: 181 AARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRS 240
           AARRRERQ++      A  +   GSSGS+S GAK+PR LI SQ+   +  STSN TTPRS
Sbjct: 183 AARRRERQLMAA----AVTTAGAGSSGSTS-GAKKPR-LITSQNTTTSHTSTSN-TTPRS 242

Query: 241 FETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYD 297
           F+T+SS+QDA FK++LPG VRAPAVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYD
Sbjct: 243 FDTSSSNQDAGFKETLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGFLYD 302

[Close]
BLAST of Lsi04G000260 vs. TrEMBL
Match: A0A0B2RZR0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_007372 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.1e-66
Identity = 161/313 (51.44%), Postives = 202/313 (64.54%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLH--QQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPP 60
           MLGLRD++FIAPTPS LH  QQ Q IS++HH +LPLPS A+L V +GIFPLL   P    
Sbjct: 3   MLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTV-PHTND 62

Query: 61  PQAPPNQTADDGSERCRGLEHLKR---TQDFGFGKGDSLIGGGGNNGSDEQVKGDGGDGS 120
            Q      A++ +       +LK    T+     KG   +   G+N   + ++ + G G 
Sbjct: 63  VQVQVQDCANNNTNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSN--KQMMESEEGGGE 122

Query: 121 MAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATA 180
             VC+DCGNRAK++C +RRCRTCCKGRG  CSTHVKSTWVPA+ RR         G  ++
Sbjct: 123 FRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRG-------GGGDSS 182

Query: 181 SGDGGSSGSSSAGAKRPRVLIPSQSAAVAA---ASTSNATTPRSFETTSSHQDASFKKSL 240
            GDG S   +S   KR R L  S++ A +A   +STSNAT  +SF+T+S  QDA FK+SL
Sbjct: 183 GGDGNSDAGAS---KRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSL 242

Query: 241 PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLH 300
           P HVRAPAVFRCHRV+AI SGE E+ Y ATV+I GHVFKGFLYD GAD +N  PS+S L 
Sbjct: 243 PRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQ 302

Query: 301 LESG----NHNRE 302
           L +     N+NRE
Sbjct: 303 LGNNGSGKNNNRE 302

[Close]
BLAST of Lsi04G000260 vs. TAIR10
Match: AT5G12330.4 (AT5G12330.4 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 218.0 bits (554), Expect = 7.9e-57
Identity = 146/312 (46.79%), Postives = 183/312 (58.65%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQ 60
           M+GLRDV  +AP     HQ   +IS   H +    ++AALGV  G+ PLL A        
Sbjct: 90  MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGV--GVIPLLTA-------- 149

Query: 61  APPNQTADDG-------SERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGD 120
             P Q  +D        + R +   +   TQ   F   +    G  +N S     G G  
Sbjct: 150 GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGS---GSGAS 209

Query: 121 GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVA 180
           G+ A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++       
Sbjct: 210 GT-ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT----- 269

Query: 181 TASGDGGSSGSSSAGAKRPRVL---IPSQSAAVAAASTSNATTPRSFETTSSHQDAS-FK 240
            A+   GSS S+S+G K+PR++      Q  A +  STSN T P+SFET+SS QD    +
Sbjct: 270 GANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSR 329

Query: 241 KSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 300
           ++ PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S
Sbjct: 330 EAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMS 379

[Close]
BLAST of Lsi04G000260 vs. TAIR10
Match: AT4G36260.1 (AT4G36260.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-33
Identity = 80/163 (49.08%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 119 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 178
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 179 GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 238
           GG SGS  AG       IP +        TS+++   S        +ASF    PG V +
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASF----PGEVSS 213

Query: 239 PAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 281
            A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 DALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Lsi04G000260 vs. TAIR10
Match: AT3G54430.1 (AT3G54430.1 SHI-related sequence 6)

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-33
Identity = 78/173 (45.09%), Postives = 100/173 (57.80%), Query Frame = 1 

Query: 118 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 177
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS--------------- 99

Query: 178 DGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 237
                 SSS   ++ ++ I  QS+   +             TT+S Q+  F++ LPG + 
Sbjct: 100 ------SSSPSERKKKLKIDKQSSPNVSL----------LPTTTSRQERGFREGLPGKIE 159

Query: 238 APAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 290
           APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 APAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of Lsi04G000260 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29
Identity = 78/190 (41.05%), Postives = 102/190 (53.68%), Query Frame = 1 

Query: 91  GDSLIGGGGNNGSDEQVK--GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCST 150
           G++   G G   +   ++  G GG      C+DCGN+AKK+C + RCRTCCK RG  CST
Sbjct: 114 GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECST 173

Query: 151 HVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAAST 210
           HV+STWVPAA+RRERQ  +      T    G S        KR R  +P+ S+++     
Sbjct: 174 HVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCT-- 233

Query: 211 SNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGH 270
                        SH       + P  V + AVFRC RV+++  GE E AYQ  V+IGGH
Sbjct: 234 ----------RIPSHSGLEV-GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGH 284

Query: 271 VFKGFLYDQG 279
           +FKG LYD G
Sbjct: 294 IFKGILYDLG 284

[Close]
BLAST of Lsi04G000260 vs. TAIR10
Match: AT1G75520.1 (AT1G75520.1 SHI-related sequence 5)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-28
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = 1 

Query: 119 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 178
           C+DCGN+AKK+C + RCRTCCK RG HC THVKSTWVPAA+RRER     +  +A+    
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER-----LAQLASLQHH 184

Query: 179 GGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQDASFKKS--LPGHV 238
             SS   +  AKR R      +      S    +   +    +++ ++  + S  LP  V
Sbjct: 185 SASS-RETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEV 244

Query: 239 RAPAVFRCHRVTAISSGEGE--LAYQATVNIGGHVFKGFLYDQGADDKN 284
            +PA+FRC RV++I   E +   AYQ  VNIGGH+FKG LYDQG + ++
Sbjct: 245 NSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQD 287

[Close]
BLAST of Lsi04G000260 vs. NCBI nr
Match: gi|659092229|ref|XP_008446964.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 546.2 bits (1406), Expect = 3.6e-152
Identity = 281/303 (92.74%), Postives = 288/303 (95.05%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  APPNQ-TADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGDGSMAVC 120
            PPN  T DD ++R R  ++LKRTQDFGFGKG+SLIGG GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQS-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQS AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 NRE 302
           +RE
Sbjct: 301 HRE 303

[Close]
BLAST of Lsi04G000260 vs. NCBI nr
Match: gi|449449461|ref|XP_004142483.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus])

HSP 1 Score: 543.9 bits (1400), Expect = 1.8e-151
Identity = 280/303 (92.41%), Postives = 287/303 (94.72%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPPQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLPP Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  APPNQ-TADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVKGDGGDGSMAVC 120
            PPN  T DD ++R R  ++LKRTQDFGFGKG+SLI G GNNGSDE VKGD GDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQS-AAVAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQS AA AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLESGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 NRE 302
           +RE
Sbjct: 301 HRE 303

[Close]
BLAST of Lsi04G000260 vs. NCBI nr
Match: gi|1009119153|ref|XP_015876225.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 289.7 bits (740), Expect = 6.0e-75
Identity = 178/337 (52.82%), Postives = 216/337 (64.09%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSD--------HHPSLPLPSSAALGVSVGIFPLLAA 60
           MLGLRDVLFIAP     +Q T  ISS         H  ++PLPSS +LGV +GIFPLL A
Sbjct: 1   MLGLRDVLFIAPQ----NQTTINISSSSSDHNHHHHQTNIPLPSSTSLGVGLGIFPLLTA 60

Query: 61  TPCL----PPPQAPPNQTADDGSERCRGLEH---LKRTQDFGFGKGDS------LIGGGG 120
           TPC+    PPP   PN   +  S       H   LK+ Q+    K D       L+ G  
Sbjct: 61  TPCVTTPPPPPPPQPNPNINHPSSCNPDAYHYWSLKKFQELNSSKQDDHHHQNQLLLGPN 120

Query: 121 NNGSDE-----------QVKGD-GGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCS 180
           NNG  +            V+ D GG+ S   C+DCGNRAKK+C ++RCRTCCK RG  CS
Sbjct: 121 NNGDGDGYDHEREEEAQMVESDEGGNTSSRACKDCGNRAKKDCGFKRCRTCCKARGFDCS 180

Query: 181 THVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSS--SAGAKRPRVLIPSQ--SAAV 240
           THV+STWVPA+RRRER  ++V+ G +   G GG  GSS  S+G KRPR+L+PSQ  + + 
Sbjct: 181 THVRSTWVPASRRRERHEMMVL-GSSAGGGAGGGDGSSGSSSGVKRPRILVPSQIGNNSG 240

Query: 241 AAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV 300
           + ASTSN  TPRSF+   +HQDASFK+SLPG VR+ AVFRCHRVTAIS+GE ELAYQATV
Sbjct: 241 SHASTSNVNTPRSFDFGYAHQDASFKQSLPGKVRSSAVFRCHRVTAISNGEAELAYQATV 300

[Close]
BLAST of Lsi04G000260 vs. NCBI nr
Match: gi|694394776|ref|XP_009372746.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 286.2 bits (731), Expect = 6.7e-74
Identity = 173/315 (54.92%), Postives = 200/315 (63.49%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLH-QQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPP 60
           MLGLRD+L IAPTP+SLH QQ Q ISSDHH +LPLPSSAALGV +GIFPLL ATP  P  
Sbjct: 1   MLGLRDILLIAPTPTSLHHQQHQPISSDHHTALPLPSSAALGVGLGIFPLLTATPHAP-- 60

Query: 61  QAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVK----------- 120
                 TA+  S+       L++ QD    K D L  G  N+G  +Q +           
Sbjct: 61  ------TAEGNSDTSH-YWGLRKYQDPNSSKQDMLNFGNQNHGGAQQHEQVVDCHGNNDR 120

Query: 121 ---GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQM 180
              G G   +M  C+DCGNRAKK CEYRRCRTCC+GRG HCSTHVKSTWVPA+RRRERQ 
Sbjct: 121 DGAGGGKSSNMKACKDCGNRAKKGCEYRRCRTCCRGRGYHCSTHVKSTWVPASRRRERQN 180

Query: 181 LVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQD 240
           +V +  V    G  GSSGSSS  AKRPRV +PSQ+A+                      D
Sbjct: 181 MVTV-AVPGVGGGEGSSGSSSV-AKRPRVSVPSQNAST---------------------D 240

Query: 241 ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAF 300
           A+ K+SLP  VRAPAVFRCHRVTAIS+GE ELAYQATV I GHVF+G LYD G D+ N  
Sbjct: 241 ANVKRSLPDKVRAPAVFRCHRVTAISNGEAELAYQATVKISGHVFRGLLYDHGVDENNTL 283

[Close]
BLAST of Lsi04G000260 vs. NCBI nr
Match: gi|694394779|ref|XP_009372747.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 283.5 bits (724), Expect = 4.3e-73
Identity = 172/315 (54.60%), Postives = 199/315 (63.17%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLH-QQTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLPPP 60
           MLGLRD+L IAPTP+SLH QQ Q ISSDHH +LPLPSSAALGV +GIFPLL ATP  P  
Sbjct: 1   MLGLRDILLIAPTPTSLHHQQHQPISSDHHTALPLPSSAALGVGLGIFPLLTATPHAP-- 60

Query: 61  QAPPNQTADDGSERCRGLEHLKRTQDFGFGKGDSLIGGGGNNGSDEQVK----------- 120
                 TA+  S+       L++ QD    K D L  G  N+G  +Q +           
Sbjct: 61  ------TAEGNSDTSH-YWGLRKYQDPNSSKQDMLNFGNQNHGGAQQHEQVVDCHGNNDR 120

Query: 121 ---GDGGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQM 180
              G G   +M  C+DCGNRAKK CEYRRCRTCC+GRG HCSTHVKSTWVPA+RRRERQ 
Sbjct: 121 DGAGGGKSSNMKACKDCGNRAKKGCEYRRCRTCCRGRGYHCSTHVKSTWVPASRRRERQN 180

Query: 181 LVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAVAAASTSNATTPRSFETTSSHQD 240
           +V +  V    G  GSSGSSS  AKRPRV +PSQ+A                       +
Sbjct: 181 MVTV-AVPGVGGGEGSSGSSSV-AKRPRVSVPSQNA-----------------------N 240

Query: 241 ASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAF 300
           A+ K+SLP  VRAPAVFRCHRVTAIS+GE ELAYQATV I GHVF+G LYD G D+ N  
Sbjct: 241 ANVKRSLPDKVRAPAVFRCHRVTAISNGEAELAYQATVKISGHVFRGLLYDHGVDENNTL 281

The following BLAST results are available for this feature:
BLAST of Lsi04G000260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LRP1_ARATH1.4e-5546.79Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1[more]
SRS2_ARATH2.2e-3249.08Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1[more]
SRS6_ARATH4.8e-3245.09Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1[more]
SRS1_ARATH5.5e-2841.05Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2[more]
SRS5_ARATH8.0e-2743.20Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1[more]
BLAST of Lsi04G000260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWX6_CUCSA1.2e-15192.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1[more]
G7J0K6_MEDTR9.4e-6750.49LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_3g014660 PE=4... [more]
G7LG16_MEDTR1.2e-6653.31LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_8g039110 PE=4... [more]
A0A0D2Q8N8_GOSRA1.6e-6649.06Uncharacterized protein OS=Gossypium raimondii GN=B456_006G123900 PE=4 SV=1[more]
A0A0B2RZR0_GLYSO2.1e-6651.44Uncharacterized protein OS=Glycine soja GN=glysoja_007372 PE=4 SV=1[more]
BLAST of Lsi04G000260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12330.47.9e-5746.79 Lateral root primordium (LRP) protein-related[more]
AT4G36260.11.2e-3349.08 Lateral root primordium (LRP) protein-related[more]
AT3G54430.12.7e-3345.09 SHI-related sequence 6[more]
AT3G51060.13.1e-2941.05 Lateral root primordium (LRP) protein-related[more]
AT1G75520.14.5e-2843.20 SHI-related sequence 5[more]
BLAST of Lsi04G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092229|ref|XP_008446964.1|3.6e-15292.74PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo][more]
gi|449449461|ref|XP_004142483.1|1.8e-15192.41PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus][more]
gi|1009119153|ref|XP_015876225.1|6.0e-7552.82PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba][more]
gi|694394776|ref|XP_009372746.1|6.7e-7454.92PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Pyrus x bretschnei... [more]
gi|694394779|ref|XP_009372747.1|4.3e-7354.60PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Pyrus x bretschnei... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007818SHI
IPR006511SHI_C
IPR006510Znf_LRP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G000260.1Lsi04G000260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMsTIGR01623TIGR01623coord: 118..160
score: 1.4
IPR006511Lateral Root Primordium type 1, C-terminalTIGRFAMsTIGR01624TIGR01624coord: 232..278
score: 3.4
IPR007818Protein of unknown function DUF702PFAMPF05142DUF702coord: 117..280
score: 9.4
NoneNo IPR availablePANTHERPTHR31604FAMILY NOT NAMEDcoord: 2..297
score: 4.1E
NoneNo IPR availablePANTHERPTHR31604:SF2PROTEIN SHI RELATED SEQUENCE 6coord: 2..297
score: 4.1E