Carg01995 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01995
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	Cucurbita_argyrosperma_scaffold_003 : 1601112 .. 1602557 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGGTTTAAGAAATTAATTCTTTTTCACCACACAAACACACACACACACACACCGCAAAATCCCCACCTCCCAAACAAACTGAACTCTGAATTTCATCATTTAAATAATACTGTTCTTGGCCTTCTCGCCCCAATTCAGATTAACCCTCTTTCATTCTCAATCTCAATTTCCAGACCTTTCTTTCTCCTTTTGTGTTAATACAACAATGTTGGGTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACACACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCTTCCTCCACCGCTCTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAAGTTAGTGATCGTAGTCGGAGTTTGGAGAATCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATAGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTCTGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCATCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAAAGTCTTGATTCCCTCACAGACTACCGGCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGGTAAACATCTCCCTAACTCTCTCTTTACATTTCTCCATTTTTGTTTCCTTGTGTTTCGTACTGAATTCAGAATCATGAGCAGCAATTTTATGAGATGTTTGTTCACTCTGTTTTTCACTCTGTTTCTCTCTATGTAATGATTTGGTTACTTGTGTCTTTATGTATAATGTTAGAATAGTGCTGATGAACTTAGGATTAGTTGGGAATGCCTTCTCAAGTGCTTAAAACGAAAGCTTTCGAAGTATTGAAAAGGGGTTTTAAGCGTTTAGAAAGTCATTCCAAAACGACCCATAATGCTAAAACATCCGCTTATAATACTCAGTTAACCACCATTGGAATTCTCATGACTTTGAAACCAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCAAGTTCGGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTAG

mRNA sequence

TTTTGGTTTAAGAAATTAATTCTTTTTCACCACACAAACACACACACACACACACCGCAAAATCCCCACCTCCCAAACAAACTGAACTCTGAATTTCATCATTTAAATAATACTGTTCTTGGCCTTCTCGCCCCAATTCAGATTAACCCTCTTTCATTCTCAATCTCAATTTCCAGACCTTTCTTTCTCCTTTTGTGTTAATACAACAATGTTGGGTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACACACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCTTCCTCCACCGCTCTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAAGTTAGTGATCGTAGTCGGAGTTTGGAGAATCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATAGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTCTGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCATCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAAAGTCTTGATTCCCTCACAGACTACCGGCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCAAGTTCGGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTAG

Coding sequence (CDS)

ATGTTGGGTCTCCGTGATGTTCTATTTATAGCACCGACGCCTTCTTCTCTTCACCAACACACCCAAATCATTTCTTCTGATCATCACCCATCTCTTCCTCTGCCTTCCTCCACCGCTCTTGGCGTCAGCGTCGGTATTTTCCCCCTTCTTGCTGCAACCCCATGTCTCCAGCCGCCGCCTAATCAGATGCCTGATGAAGTTAGTGATCGTAGTCGGAGTTTGGAGAATCTAAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTGATAGGCGGTGGCGGAAATCATGGCTACGACGACCAAGTGAAAGGCGATGGTGGCGATGGTTCTCTGGGTGTGTGTAGAGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGGAGGTGTAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCGGCATCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTGATGGATGGCGTCGCCACTAGTGGGTCTTCTGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAAAGTCTTGATTCCCTCACAGACTACCGGCGCCGCTTCCACTTCCAACGCCACCACTCCCCGGAGCTTCGAAACAACCTCTAGTCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGCAAGTTCGGGCTCCAGCCGTGTTCAAATGCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAACTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGATTTCTTTATGATCAAGGAGCTGATGTTAAAAATGCACTCCCATCTATTTCACACCTCCATTTGGAAAGTGGTAATCACCTCAGGGATTAG

Protein sequence

MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPPNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATSGSSGSSSAGAKRPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD

Homology

[Close]

BLAST of Carg01995 vs. NCBI nr
Match: XP_022988928.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 476.1 bits (1224), Expect = 8.6e-131
Identity = 257/292 (88.01%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60

Query: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120
           NQMPDEVSDR RSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG
Sbjct: 61  NQMPDEVSDRCRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120

Query: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXXXXXXX 180
           NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASR             XXXXXXXXXXX
Sbjct: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA 240
           XXXX                    PRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA 240

Query: 241 ISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD 293
           ISSG GELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Sbjct: 241 ISSGVGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD 292

[Close]

BLAST of Carg01995 vs. NCBI nr
Match: XP_023527541.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.6 bits (1220), Expect = 2.5e-130
Identity = 257/292 (88.01%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60

Query: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120
           NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG
Sbjct: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120

Query: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXXXXXXX 180
           NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASR             XXXXXXXXXXX
Sbjct: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA 240
           XXXX                     RSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVTA 240

Query: 241 ISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD 293
           ISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS LHLESGNHLRD
Sbjct: 241 ISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISQLHLESGNHLRD 292

[Close]

BLAST of Carg01995 vs. NCBI nr
Match: XP_022956997.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 254/295 (86.10%), Postives = 256/295 (86.78%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60

Query: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120
           NQMPDE+SDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG
Sbjct: 61  NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120

Query: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAS---RRRERQMLVVMDGVXXXXXXXX 180
           NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAS                 XXXXXXXX
Sbjct: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHR 240
           XXXXXXX                      SFETTSSHQDASFKKSLPGQV+APAVFKCHR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFETTSSHQDASFKKSLPGQVQAPAVFKCHR 240

Query: 241 VTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD 293
           VTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD
Sbjct: 241 VTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNHLRD 295

[Close]

BLAST of Carg01995 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110
Identity = 230/303 (75.91%), Postives = 242/303 (79.87%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120
           PPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLIGG GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA-------SRRRERQMLVVMDGV 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA                      
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRA 240
           XXXXXXXXXXXXXXX                     RSFETTSSHQDASFKKSLPG VRA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 293
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

[Close]

BLAST of Carg01995 vs. NCBI nr
Match: XP_004142483.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_5G623840 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 229/303 (75.58%), Postives = 241/303 (79.54%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120
           PPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLI G GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA-------SRRRERQMLVVMDGV 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA                      
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRA 240
           XXXXXXXXXXXXXXX                     RSFETTSSHQDASFKKSLPG VRA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 293
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

[Close]

BLAST of Carg01995 vs. TAIR10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-35
Identity = 125/301 (41.53%), Postives = 148/301 (49.17%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLL-AATPCLQPP 60
           M+GLRDV  +A  P+  HQ+  +IS   H +        LG  VG+ PLL A TP     
Sbjct: 90  MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAXXXXLG--VGVIPLLTAGTP----- 149

Query: 61  PNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLI-----GGGGNHGYDDQVKGDGGDGSLG 120
             Q   E SD    L N +R Q          +                           
Sbjct: 150 --QQNVEDSD-INFLGNNRRWQXXXXXXXXXXLHFKSTXXXXXXXXXXXXXXXXXXXXXX 209

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVV----MDGVX 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        G  
Sbjct: 210 XCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSS 269

Query: 181 XXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAP 240
             XXXXXXXXXXXX                                   +++ PGQVRA 
Sbjct: 270 LSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAWPGQVRAA 329

Query: 241 AVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGN 290
           AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + N
Sbjct: 330 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 378

[Close]

BLAST of Carg01995 vs. TAIR10
Match: AT3G54430.1 (SHI-related sequence 6)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-32
Identity = 76/169 (44.97%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 115 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXX 174
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSS------------ 99

Query: 175 XXXXXXXXXXPKVLIPSQTTGAASTSNATTPR--SFETTSSHQDASFKKSLPGQVRAPAV 234
                          PS+          ++P      TT+S Q+  F++ LPG++ APAV
Sbjct: 100 ---------------PSERKKKLKIDKQSSPNVSLLPTTTSRQERGFREGLPGKIEAPAV 159

Query: 235 FKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS 281
           FK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Sbjct: 160 FKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of Carg01995 vs. TAIR10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-27
Identity = 65/154 (42.21%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPA++RRERQ  +           
Sbjct: 144 CQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLA-----TVQPQ 203

Query: 176 XXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKC 235
                    PK           +TS++       + S  +  +F    P +V + AVF+C
Sbjct: 204 TQLPRGESVPK----RHRENLPATSSSLVCTRIPSHSGLEVGNF----PAEVSSSAVFRC 263

Query: 236 HRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG 270
            RV+++  GE E  YQ  V+IGGH+FKG LYD G
Sbjct: 264 VRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg01995 vs. TAIR10
Match: AT1G19790.1 (SHI-related sequence 7)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 70/154 (45.45%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG  C THVKSTWV A++RRERQ  + +         
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDA 178

Query: 176 XXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKC 235
              XXXXXX                     R    +SS  + S    LP ++ +PAVF+C
Sbjct: 179 NSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNASSSGLETS---HLPPEISSPAVFRC 238

Query: 236 HRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG 270
            RV++I   + E  YQ  V+IGGHVFKG LYDQG
Sbjct: 239 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269

[Close]

BLAST of Carg01995 vs. TAIR10
Match: AT1G75520.1 (SHI-related sequence 5)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-26
Identity = 74/160 (46.25%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER--QMLVVMDGVXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG HC THVKSTWVPA++RRER  Q+  +        
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 176 XXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVF 235
           XXXXXXXXXXX                           +S+      + LP +V +PA+F
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANTRVVNANSNSGLEVSQHLPPEVNSPAIF 244

Query: 236 KCHRVTAISSGEGE--LTYQATVNIGGHVFKGFLYDQGAD 272
           +C RV++I   E +    YQ  VNIGGH+FKG LYDQG +
Sbjct: 245 RCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE 284

[Close]

BLAST of Carg01995 vs. Swiss-Prot
Match: sp|Q94CK9|LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-34
Identity = 126/301 (41.86%), Postives = 149/301 (49.50%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLL-AATPCLQPP 60
           M+GLRDV  +A  P+  HQ+  +IS   H +       ALG  VG+ PLL A TP     
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAXXXALG--VGVIPLLTAGTP----- 62

Query: 61  PNQMPDEVSDRSRSLENLKRTQDFGFGKGDSLI-----GGGGNHGYDDQVKGDGGDGSLG 120
             Q   E SD    L N +R Q          +                           
Sbjct: 63  --QQNVEDSD-INFLGNNRRWQXXXXXXXXXXLHFKSTXXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVV----MDGVX 180
            C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        G  
Sbjct: 123 XCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSS 182

Query: 181 XXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAP 240
             XXXXXXXXXXXX                                   +++ PGQVRA 
Sbjct: 183 LSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAWPGQVRAA 242

Query: 241 AVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL--ESGN 290
           AVFKC RVTA+  G+ E  YQA V IGGHVFKGFLYDQG + K   PS+S LHL   + N
Sbjct: 243 AVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANN 291

[Close]

BLAST of Carg01995 vs. Swiss-Prot
Match: sp|Q9M2U4|SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-31
Identity = 76/169 (44.97%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 115 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXX 174
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRSSSS------------ 99

Query: 175 XXXXXXXXXXPKVLIPSQTTGAASTSNATTPR--SFETTSSHQDASFKKSLPGQVRAPAV 234
                          PS+          ++P      TT+S Q+  F++ LPG++ APAV
Sbjct: 100 ---------------PSERKKKLKIDKQSSPNVSLLPTTTSRQERGFREGLPGKIEAPAV 159

Query: 235 FKCHRVTAISSGE-GELTYQATVNIGGHVFKGFLYDQGADVKNALPSIS 281
           FK  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   A P +S
Sbjct: 160 FKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of Carg01995 vs. Swiss-Prot
Match: sp|Q9SD40|SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 6.7e-26
Identity = 65/154 (42.21%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STWVPA++RRERQ  +           
Sbjct: 144 CQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLA-----TVQPQ 203

Query: 176 XXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKC 235
                    PK           +TS++       + S  +  +F    P +V + AVF+C
Sbjct: 204 TQLPRGESVPK----RHRENLPATSSSLVCTRIPSHSGLEVGNF----PAEVSSSAVFRC 263

Query: 236 HRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG 270
            RV+++  GE E  YQ  V+IGGH+FKG LYD G
Sbjct: 264 VRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Carg01995 vs. Swiss-Prot
Match: sp|Q9LQZ5|SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-25
Identity = 74/160 (46.25%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER--QMLVVMDGVXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG HC THVKSTWVPA++RRER  Q+  +        
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 176 XXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVF 235
           XXXXXXXXXXX                           +S+      + LP +V +PA+F
Sbjct: 185 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLANTRVVNANSNSGLEVSQHLPPEVNSPAIF 244

Query: 236 KCHRVTAISSGEGE--LTYQATVNIGGHVFKGFLYDQGAD 272
           +C RV++I   E +    YQ  VNIGGH+FKG LYDQG +
Sbjct: 245 RCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE 284

[Close]

BLAST of Carg01995 vs. Swiss-Prot
Match: sp|Q9FXH7|SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-25
Identity = 70/154 (45.45%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 116 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXX 175
           C+DCGN+AKK+C + RCRTCCK RG  C THVKSTWV A++RRERQ  + +         
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDA 178

Query: 176 XXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKC 235
              XXXXXX                     R    +SS  + S    LP ++ +PAVF+C
Sbjct: 179 NSRXXXXXXXXXXXXXXXXXXXXXXXXXCTRVVNASSSGLETS---HLPPEISSPAVFRC 238

Query: 236 HRVTAISSGEGELTYQATVNIGGHVFKGFLYDQG 270
            RV++I   + E  YQ  V+IGGHVFKG LYDQG
Sbjct: 239 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269

[Close]

BLAST of Carg01995 vs. TrEMBL
Match: tr|A0A1S3BFS5|A0A1S3BFS5_CUCME (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 2.5e-110
Identity = 230/303 (75.91%), Postives = 242/303 (79.87%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120
           PPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLIGG GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA-------SRRRERQMLVVMDGV 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA                      
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRA 240
           XXXXXXXXXXXXXXX                     RSFETTSSHQDASFKKSLPG VRA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 293
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

[Close]

BLAST of Carg01995 vs. TrEMBL
Match: tr|A0A0A0KWX6|A0A0A0KWX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.2e-109
Identity = 229/303 (75.58%), Postives = 241/303 (79.54%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPP-NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120
           PPP N  PD+V+DR+R+ +NLKRTQDFGFGKG+SLI G GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA-------SRRRERQMLVVMDGV 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA                      
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRA 240
           XXXXXXXXXXXXXXX                     RSFETTSSHQDASFKKSLPG VRA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 293
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

[Close]

BLAST of Carg01995 vs. TrEMBL
Match: tr|A0A2I4GZU2|A0A2I4GZU2_9ROSI (protein LATERAL ROOT PRIMORDIUM 1 OS=Juglans regia OX=51240 GN=LOC109012318 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 163/289 (56.40%), Postives = 200/289 (69.20%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLG+RD++ IAPT SS+HQ  Q IS++HHP+LPLPSS ALGV +GIFPLL ATPC+ P  
Sbjct: 3   MLGIRDLVLIAPT-SSMHQQNQPISAEHHPNLPLPSSAALGVGLGIFPLLTATPCITPSN 62

Query: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVCRDCG 120
           N + D  +  +R+   LK+ Q+        L      +   +Q+    G G + VCRDCG
Sbjct: 63  NGVQDCGNSNNRNCWTLKKGQELSSSNKGGL---DVENDASEQMFESSGSG-MRVCRDCG 122

Query: 121 NRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVXXXXXXXXXXX 180
           N+AKK+C YRRCRTCCK RGN C+THV+STWVPA+RRR+R+M VV  G            
Sbjct: 123 NKAKKDCTYRRCRTCCKSRGNDCATHVRSTWVPAARRRDRRMSVV-GGDGDASSGSSSGV 182

Query: 181 XXXXPKVLIPS-QTTGAASTSNATTPRSFETTSSHQDASFKKSLPGQVRAPAVFKCHRVT 240
                +V  P+   T  ASTSNATTPRS   +SSHQDASFK SLP QVRAPAVF+CHRVT
Sbjct: 183 KRPRIEVSPPNVNATSHASTSNATTPRSTGISSSHQDASFKHSLPRQVRAPAVFRCHRVT 242

Query: 241 AISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGN 289
           A+SSGE E+ YQATV+I GHVFKGFLYD G D KN+ PS+S +HLES +
Sbjct: 243 AVSSGEAEIVYQATVSISGHVFKGFLYDHGVDDKNSFPSVSQMHLESSS 285

[Close]

BLAST of Carg01995 vs. TrEMBL
Match: tr|A0A251QAP1|A0A251QAP1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G036500 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.1e-60
Identity = 149/308 (48.38%), Postives = 174/308 (56.49%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLGLRD+L IAPTPSS+HQ  Q ISSD    LPLPSST LGV +GIFPLL ATPC    P
Sbjct: 1   MLGLRDILLIAPTPSSMHQQNQPISSD----LPLPSSTTLGVGLGIFPLLTATPCAPHAP 60

Query: 61  NQMPDEVSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHG--YDDQVKGDG---------- 120
                EV+  S     L+R Q+    K D L    GNHG  ++  V+ +G          
Sbjct: 61  TTA--EVNSDSSHFWGLRRCQELNPSKQDML--NFGNHGAQHEQVVECEGXXXXXXXXXX 120

Query: 121 ----GDGSLGVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLV 180
                   +  C+DCGN+AKK CEY RCRTCC+GRG  CSTHVKSTWVPA+RRRERQM V
Sbjct: 121 XXXXXXXXMKACKDCGNKAKKGCEYGRCRTCCRGRGYDCSTHVKSTWVPAARRRERQMGV 180

Query: 181 VMDGVXXXXXXXXXXXXXXXPKVLIPSQTTGAASTSNATTPRSFETTSSHQDASFKKSLP 240
                                 V +P    G                    DA+ K+SLP
Sbjct: 181 T---------------------VAVPGVGGGG-------------------DANIKQSLP 240

Query: 241 GQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHL 293
            +VRAPAVF+CHRVTAIS+G  EL YQATV I GHVF+G LYD G D  NA P IS  HL
Sbjct: 241 DKVRAPAVFRCHRVTAISNGAAELAYQATVKISGHVFQGLLYDHGVDKDNAFPCISPSHL 260

[Close]

BLAST of Carg01995 vs. TrEMBL
Match: tr|A0A0L9UIA1|A0A0L9UIA1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g003000 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.1e-55
Identity = 145/310 (46.77%), Postives = 171/310 (55.16%), Query Frame = 0


Query: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60
           MLGLRD++ IA TP SLHQ  Q IS +  P+LPLPSS AL V  GIFPLL ATPC+ P P
Sbjct: 3   MLGLRDLVLIAQTP-SLHQ-GQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCV-PHP 62

Query: 61  NQMPDEVSD----------------RSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQV 120
           +Q  +E+ D                                                   
Sbjct: 63  HQ-TNEIQDCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 KGDGGDGSLG----VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER 180
                +G  G    VC+DCGNRAKK+C +RRCRTCCKGRG  CSTHVKSTWVP+ RRRER
Sbjct: 123 XXXXXNGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRER 182

Query: 181 QMLVVMDGVXXXXXXXXXXXXXXXPKVLIPSQTTGA----ASTSNATTPRSFETTSSHQD 240
           +M+V   G                P+ ++ S               TTP+S  T SSHQD
Sbjct: 183 EMVVAPAG--------GVGGGSKRPRAIVGSSQNATXXXXXXXXXXTTPKSLATISSHQD 242

Query: 241 ASFKKSLPGQVRAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGAD--VKN 285
           ASFK+SLPG VRAPAVFKCHRV+AI +GE E  Y ATV+I GHVFKGFLYD G D  + N
Sbjct: 243 ASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIAN 300

The following BLAST results are available for this feature:

BLAST of Carg01995 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988928.1	8.6e-131	88.01	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023527541.1	2.5e-130	88.01	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022956997.1	2.0e-127	86.10	protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata]	[more]
XP_008446964.1	3.8e-110	75.91	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
XP_004142483.1	1.9e-109	75.58	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypot...	[more]

BLAST of Carg01995 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12330.4	2.2e-35	41.53	Lateral root primordium (LRP) protein-related	[more]
AT3G54430.1	2.2e-32	44.97	SHI-related sequence 6	[more]
AT3G51060.1	3.7e-27	42.21	Lateral root primordium (LRP) protein-related	[more]
AT1G19790.1	1.8e-26	45.45	SHI-related sequence 7	[more]
AT1G75520.1	1.8e-26	46.25	SHI-related sequence 5	[more]

BLAST of Carg01995 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94CK9\|LRP1_ARATH	1.0e-34	41.86	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
sp\|Q9M2U4\|SRS6_ARATH	4.0e-31	44.97	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
sp\|Q9SD40\|SRS1_ARATH	6.7e-26	42.21	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
sp\|Q9LQZ5\|SRS5_ARATH	3.3e-25	46.25	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
sp\|Q9FXH7\|SRS7_ARATH	3.3e-25	45.45	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of Carg01995 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFS5\|A0A1S3BFS5_CUCME	2.5e-110	75.91	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=4 S...	[more]
tr\|A0A0A0KWX6\|A0A0A0KWX6_CUCSA	1.2e-109	75.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=4 SV=1	[more]
tr\|A0A2I4GZU2\|A0A2I4GZU2_9ROSI	3.6e-77	56.40	protein LATERAL ROOT PRIMORDIUM 1 OS=Juglans regia OX=51240 GN=LOC109012318 PE=4...	[more]
tr\|A0A251QAP1\|A0A251QAP1_PRUPE	3.1e-60	48.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G036500 PE=4 SV=1	[more]
tr\|A0A0L9UIA1\|A0A0L9UIA1_PHAAN	5.1e-55	46.77	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g003000 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007818	SHI
IPR006510	Znf_LRP1
IPR006511	SHI_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01995-RA	Carg01995-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 223..269 e-value: 6.2E-26 score: 88.1
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 115..157 e-value: 2.0E-24 score: 83.3
None	No IPR available	PFAM	PF05142	DUF702	coord: 115..271 e-value: 5.8E-55 score: 185.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..221
None	No IPR available	PANTHER	PTHR31604:SF2	PROTEIN SHI RELATED SEQUENCE 6	coord: 5..288
IPR007818	SHI protein family	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 5..288

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01995	Cla009935	Watermelon (97103) v1	carwmB0840
Carg01995	Csa5G623840	Cucumber (Chinese Long) v2	carcuB0857
Carg01995	MELO3C012474	Melon (DHL92) v3.5.1	carmeB0834
Carg01995	ClCG05G026830	Watermelon (Charleston Gray)	carwcgB0814
Carg01995	CSPI05G27630	Wild cucumber (PI 183967)	carcpiB0877
Carg01995	Cucsa.307920	Cucumber (Gy14) v1	carcgyB0969
Carg01995	CmaCh04G013270	Cucurbita maxima (Rimu)	carcmaB1170
Carg01995	CmaCh18G008580	Cucurbita maxima (Rimu)	carcmaB1167
Carg01995	CmoCh18G008640	Cucurbita moschata (Rifu)	carcmoB1135
Carg01995	CmoCh04G014000	Cucurbita moschata (Rifu)	carcmoB1138
Carg01995	Lsi04G000260	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01995	Cp4.1LG09g04480	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01995	CsGy5G027050	Cucumber (Gy14) v2	carcgybB0831
Carg01995	CsaV3_5G036780	Cucumber (Chinese Long) v3	carcucB0881
Carg01995	Cla97C05G109100	Watermelon (97103) v2	carwmbB0876
Carg01995	Bhi07G001030	Wax gourd	carwgoB0984

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01995	Carg14408	Silver-seed gourd	carcarB591

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01995	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01995	Melon (DHL92) v3.6.1	carmedB0846