Csa5G623840 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G623840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionShort internode related sequence; contains IPR007818 (Protein of unknown function DUF702)
LocationChr5 : 25062878 .. 25064891 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCTTTTTCCAATCAACAAAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGGTAAATCTCTCTCTAAATCTCTTTTTCCATTCTTCCATTTTTGTTTTCTTGTGCTTCTCAACGAATTCCGAATCATGAGCAGAAATTAATGGGATATCTGTTTACTCTGTTTCTTTCTGTTTAATGATTTGGTTACTTGTTTCTACGTGTATAAATTTGTAAAATTTTTATGAGTAGTTTTTATTTTAGTTCTCTTTGAAGATCTTGCAGCAAATTTAACGAAACATGTTCATTAGGTATGTTGTTCGAAAACTTACCATCCTTTCATGTTATAACTCTGTTTTTCTCCTCTCTCTCTCTCCTTTCTCCAACAAGGAGGGAGTGACTTATATATAAAAGTAGAATTTAGGACCGTTTGTAAATGGCATTTCGAGTGCTTAAAAGATAAGTTTTTGTTTTTTTAAGTGTTTGTGTTTAGTAAGGAGCTTAAGTATTTAAAAAGGGGTTCAAGTGTTTAGAAAGCCATTCCAAACAGGCTTTGTGCTGTTAAAACATGCACATCTATATGTATTCTAACTGTGTTTTTTTAGCAACAAGATCATTTTCTAAACCCACCTCTTGGAATTCTCCTCACTTTGAAACCAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAGACATTCCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTTGACCACTTGAAAAAATATGATATCTTTGCTAGATTTCAGAGGTCTGTTATGTTATCTGTAAGTTTCATATAGTTGTTATCATGGTGGTAATGCAATGAATCTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGAATTTTCTGTTCTAGCCTTAAGCTGGGTTTAGTGTAAGATTTATCAAGTTCAAAGATAGTTGGATATTGATCTTCTGTATATTGCTTAGAAGATGTGTAACTTTCATCTATCCAAATATCTGCTGAAACAAGAGTTAGCTTGTCTTATTTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTCAGTCTCTTCTTTTACTGTCTATCTCAAAGAGTTTTACGAAACAAATGAAATCGTTCATCTGAGTAAGTTCTTGCGAAATTCCACGATGGTGAAACAGGC

mRNA sequence

ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG

Coding sequence (CDS)

ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG

Protein sequence

MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE*
Homology
[Close]
BLAST of Csa5G623840 vs. Swiss-Prot
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.8e-61
Identity = 142/309 (45.95%), Postives = 176/309 (56.96%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +AP     HQ   +IS   H +    ++ ALGV  G+ PLL A        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGV--GVIPLLTAGT------ 62

Query: 61  PPPNNHTPDDVT-----DRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 63  -PQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGS----GSGAS 122

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 123 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT-----G 182

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTP-RSFETTSSHQDAS-FKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + TP +SFET+SS QD    +++
Sbjct: 183 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 242

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 243 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 291

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 303 HLGGSANNH 291

[Close]
BLAST of Csa5G623840 vs. Swiss-Prot
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-35
Identity = 80/164 (48.78%), Postives = 101/164 (61.59%), Query Frame = 1 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 179
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 180 GGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 239
           GG SGS  AG       IP +        ++S++  P S        +ASF    PG V 
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLP-SHSAGLEMGEASF----PGEVS 213

Query: 240 APAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 283
           + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 SDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Csa5G623840 vs. Swiss-Prot
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-34
Identity = 78/174 (44.83%), Postives = 98/174 (56.32%), Query Frame = 1 

Query: 119 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 178
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 179 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 238
                 SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG +
Sbjct: 100 -----SSSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKI 159

Query: 239 RAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 292
            APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 EAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of Csa5G623840 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-32
Identity = 83/191 (43.46%), Postives = 106/191 (55.50%), Query Frame = 1 

Query: 92  GESLIAGPGNNGSDEHVK-GDAGDGSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCST 151
           GE+  AG G   +   ++ G +G GS  V C+DCGN+AKK+C + RCRTCCK RG  CST
Sbjct: 114 GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECST 173

Query: 152 HVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAAS 211
           HV+STWVPAA+RRERQ  +      T    G S        KR R  +P+ S++      
Sbjct: 174 HVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCTRI 233

Query: 212 TSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 271
            S+          S  +  +F    P  V + AVFRC RV+++  GE E AYQ  V+IGG
Sbjct: 234 PSH----------SGLEVGNF----PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGG 284

Query: 272 HVFKGFLYDQG 281
           H+FKG LYD G
Sbjct: 294 HIFKGILYDLG 284

[Close]
BLAST of Csa5G623840 vs. Swiss-Prot
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-31
Identity = 77/183 (42.08%), Postives = 94/183 (51.37%), Query Frame = 1 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ-MLVVMDGVATASG 179
           C+DCGN+AKK+C + RCRTCCK RG  C THVKSTWV AA+RRERQ  L V+        
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDA 178

Query: 180 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 239
           +    G      K       + S    +A + +      S    +SH        LP  +
Sbjct: 179 NSRGGGDDDDDDKEDE---KNDSCGGGSALACTRVVNASSSGLETSH--------LPPEI 238

Query: 240 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 299
            +PAVFRC RV++I   + E AYQ  V+IGGHVFKG LYDQG    +   S S     S 
Sbjct: 239 SSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSH 290

Query: 300 NHH 302
            HH
Sbjct: 299 QHH 290

[Close]
BLAST of Csa5G623840 vs. TrEMBL
Match: A0A0A0KWX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 5.6e-176
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of Csa5G623840 vs. TrEMBL
Match: A0A0L9UIA1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g003000 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.8e-74
Identity = 170/314 (54.14%), Postives = 202/314 (64.33%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRD++ IA TPS LHQ  Q IS +  P+LPLPSS AL V  GIFPLL ATPC+P   
Sbjct: 3   MLGLRDLVLIAQTPS-LHQG-QPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVP--H 62

Query: 61  PPPNNHTPD------DVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDE---HVKG- 120
           P   N   D        T  T  + NLK   +    K   +     +   DE   H KG 
Sbjct: 63  PHQTNEIQDCGAAAGGNTTTTTNYWNLKMCPEVNPPKKGVINMDDDDEEDDERHHHHKGM 122

Query: 121 -DAGDGSM-----AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER 180
            ++ +  +      VC+DCGNRAKK+C +RRCRTCCKGRG  CSTHVKSTWVP+ RRRER
Sbjct: 123 MESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRER 182

Query: 181 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLI-PSQSAAAAAAASTSNATTPRSFETTS 240
           +M+V     A A G GG       G+KRPR ++  SQ+A A + +S SNATTP+S  T S
Sbjct: 183 EMVV-----APAGGVGG-------GSKRPRAIVGSSQNATATSHSSNSNATTPKSLATIS 242

Query: 241 SHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADD 296
           SHQDASFK+SLPGHVRAPAVF+CHRV+AI +GE E AY ATV+I GHVFKGFLYD G D 
Sbjct: 243 SHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDG 300

[Close]
BLAST of Csa5G623840 vs. TrEMBL
Match: A0A0S3SKJ2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G233000 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.8e-74
Identity = 170/314 (54.14%), Postives = 202/314 (64.33%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRD++ IA TPS LHQ  Q IS +  P+LPLPSS AL V  GIFPLL ATPC+P   
Sbjct: 3   MLGLRDLVLIAQTPS-LHQG-QPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVP--H 62

Query: 61  PPPNNHTPD------DVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDE---HVKG- 120
           P   N   D        T  T  + NLK   +    K   +     +   DE   H KG 
Sbjct: 63  PHQTNEIQDCGAAAGGNTTTTTNYWNLKMCPEVNPPKKGVINMDDDDEEDDERHHHHKGM 122

Query: 121 -DAGDGSM-----AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRER 180
            ++ +  +      VC+DCGNRAKK+C +RRCRTCCKGRG  CSTHVKSTWVP+ RRRER
Sbjct: 123 MESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRER 182

Query: 181 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLI-PSQSAAAAAAASTSNATTPRSFETTS 240
           +M+V     A A G GG       G+KRPR ++  SQ+A A + +S SNATTP+S  T S
Sbjct: 183 EMVV-----APAGGVGG-------GSKRPRAIVGSSQNATATSHSSNSNATTPKSLATIS 242

Query: 241 SHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADD 296
           SHQDASFK+SLPGHVRAPAVF+CHRV+AI +GE E AY ATV+I GHVFKGFLYD G D 
Sbjct: 243 SHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDG 300

[Close]
BLAST of Csa5G623840 vs. TrEMBL
Match: G7LG16_MEDTR (LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_8g039110 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.8e-74
Identity = 169/318 (53.14%), Postives = 204/318 (64.15%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLH-QQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPS 60
           MLGLRD++ IA TPSSLH QQ Q ISSDH+P+LPLPSS+AL V +GIFPLL  T    P 
Sbjct: 3   MLGLRDLVLIAQTPSSLHNQQNQTISSDHNPNLPLPSSSALSVGLGIFPLLTTTH---PH 62

Query: 61  QPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVK----GDAGDG 120
              PNN+  +D   +   F NLK  Q        S          D   K    G   +G
Sbjct: 63  HQNPNNNNNNDNIHQDSNFWNLKMCQPQQVMMMNSSRKRVEEEDDDVRNKNLMMGCEENG 122

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
              VC+DCGNRAKK+C Y+RCRTCCKGRG  CSTHVKSTW+PA+ RR+R M+V       
Sbjct: 123 EFRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVV------- 182

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQ--SAAAAAAASTSNATT-PRSFE---TTSSHQDAS 240
           A G G S G +S+G KR ++L+ S   + AA + +S+SNA T  RS     T+S HQD  
Sbjct: 183 AEG-GDSDGGASSGTKRQKILMTSSQNNVAANSHSSSSNAATRTRSLSLDITSSCHQDPG 242

Query: 241 FKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN-AFP 300
           FK++LP +VRAPAVF+CHRV+AI +GE ELAY ATVNI GHVFKGFLYDQG DDKN   P
Sbjct: 243 FKQTLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGVDDKNETMP 302

Query: 301 SISHLHL---DSGNHHRE 304
            +S L L    SG  +RE
Sbjct: 303 CVSELQLGSNGSGKSNRE 309

[Close]
BLAST of Csa5G623840 vs. TrEMBL
Match: G7J0K6_MEDTR (LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_3g014660 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.0e-73
Identity = 156/310 (50.32%), Postives = 196/310 (63.23%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSL---HQQTQI--------ISSDHHPSLPLPSSTALGVSVGIFPL 60
           MLGLRD++ IAP+PSSL   HQQ Q         IS DH+ +  LPSS +L V  GIFPL
Sbjct: 3   MLGLRDLVLIAPSPSSLQHHHQQNQNQNQNQNQPISHDHNSNHSLPSSASLSVGFGIFPL 62

Query: 61  LAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVK 120
           L ATPC+P  Q   NN   ++ ++    F NL+   +      + +I    N+G    ++
Sbjct: 63  LTATPCMPQQQSQ-NNEVQENPSNNNN-FWNLRMCPEVVNLPKKGVITEEENHGKIAMME 122

Query: 121 GDAGD---GSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQM 180
            +          VC+DCGNRAKK+C +RRCRTCCKGRG  CSTH+KSTW+P+ RRRER++
Sbjct: 123 SEENGVYGSEYRVCQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREV 182

Query: 181 LVVMDGVATASGDGGSSGSSSAGAKRPRVLI-PSQSAAAAAAASTSNATTPRSFETTSSH 240
            +           GG  G   +G KR + L+  SQ+AAA + +S SN TTP+SF T+S H
Sbjct: 183 EMFA---------GGGDGEGCSGVKRQKGLLGSSQNAAATSHSSNSNGTTPKSFATSSCH 242

Query: 241 QDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKN 296
           QDA FK+ LPGHV APAVFRCHRVTAI +GE E AY ATV+I GHVFKGFLYD G D KN
Sbjct: 243 QDAGFKEGLPGHVNAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKN 301

[Close]
BLAST of Csa5G623840 vs. TAIR10
Match: AT5G12330.4 (AT5G12330.4 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 236.5 bits (602), Expect = 2.2e-62
Identity = 142/309 (45.95%), Postives = 176/309 (56.96%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +AP     HQ   +IS   H +    ++ ALGV  G+ PLL A        
Sbjct: 90  MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGV--GVIPLLTAGT------ 149

Query: 61  PPPNNHTPDDVT-----DRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 150 -PQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGS----GSGAS 209

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 210 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT-----G 269

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTP-RSFETTSSHQDAS-FKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + TP +SFET+SS QD    +++
Sbjct: 270 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 329

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 330 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 378

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 390 HLGGSANNH 378

[Close]
BLAST of Csa5G623840 vs. TAIR10
Match: AT4G36260.1 (AT4G36260.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 151.8 bits (382), Expect = 7.0e-37
Identity = 80/164 (48.78%), Postives = 101/164 (61.59%), Query Frame = 1 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 179
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 180 GGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 239
           GG SGS  AG       IP +        ++S++  P S        +ASF    PG V 
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLP-SHSAGLEMGEASF----PGEVS 213

Query: 240 APAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 283
           + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 SDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of Csa5G623840 vs. TAIR10
Match: AT3G54430.1 (AT3G54430.1 SHI-related sequence 6)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 78/174 (44.83%), Postives = 98/174 (56.32%), Query Frame = 1 

Query: 119 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 178
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 179 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 238
                 SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG +
Sbjct: 100 -----SSSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKI 159

Query: 239 RAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 292
            APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 EAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of Csa5G623840 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 141.4 bits (355), Expect = 9.5e-34
Identity = 83/191 (43.46%), Postives = 106/191 (55.50%), Query Frame = 1 

Query: 92  GESLIAGPGNNGSDEHVK-GDAGDGSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCST 151
           GE+  AG G   +   ++ G +G GS  V C+DCGN+AKK+C + RCRTCCK RG  CST
Sbjct: 114 GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECST 173

Query: 152 HVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAAS 211
           HV+STWVPAA+RRERQ  +      T    G S        KR R  +P+ S++      
Sbjct: 174 HVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCTRI 233

Query: 212 TSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGG 271
            S+          S  +  +F    P  V + AVFRC RV+++  GE E AYQ  V+IGG
Sbjct: 234 PSH----------SGLEVGNF----PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGG 284

Query: 272 HVFKGFLYDQG 281
           H+FKG LYD G
Sbjct: 294 HIFKGILYDLG 284

[Close]
BLAST of Csa5G623840 vs. TAIR10
Match: AT1G19790.1 (AT1G19790.1 SHI-related sequence 7)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-32
Identity = 77/183 (42.08%), Postives = 94/183 (51.37%), Query Frame = 1 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ-MLVVMDGVATASG 179
           C+DCGN+AKK+C + RCRTCCK RG  C THVKSTWV AA+RRERQ  L V+        
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDA 178

Query: 180 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 239
           +    G      K       + S    +A + +      S    +SH        LP  +
Sbjct: 179 NSRGGGDDDDDDKEDE---KNDSCGGGSALACTRVVNASSSGLETSH--------LPPEI 238

Query: 240 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 299
            +PAVFRC RV++I   + E AYQ  V+IGGHVFKG LYDQG    +   S S     S 
Sbjct: 239 SSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSH 290

Query: 300 NHH 302
            HH
Sbjct: 299 QHH 290

[Close]
BLAST of Csa5G623840 vs. NCBI nr
Match: gi|449449461|ref|XP_004142483.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus])

HSP 1 Score: 624.8 bits (1610), Expect = 8.0e-176
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of Csa5G623840 vs. NCBI nr
Match: gi|659092229|ref|XP_008446964.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 623.2 bits (1606), Expect = 2.3e-175
Identity = 302/303 (99.67%), Postives = 302/303 (99.67%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of Csa5G623840 vs. NCBI nr
Match: gi|1009119153|ref|XP_015876225.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 318.2 bits (814), Expect = 1.6e-83
Identity = 175/337 (51.93%), Postives = 216/337 (64.09%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSD--------HHPSLPLPSSTALGVSVGIFPLLAA 60
           MLGLRDVLFIAP     +Q T  ISS         H  ++PLPSST+LGV +GIFPLL A
Sbjct: 1   MLGLRDVLFIAPQ----NQTTINISSSSSDHNHHHHQTNIPLPSSTSLGVGLGIFPLLTA 60

Query: 61  TPCL------PPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGES------LIAGPG 120
           TPC+      PP QP PN + P         + +LK+ Q+    K +       L+ GP 
Sbjct: 61  TPCVTTPPPPPPPQPNPNINHPSSCNPDAYHYWSLKKFQELNSSKQDDHHHQNQLLLGPN 120

Query: 121 NNGSDEHV------------KGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCS 180
           NNG  +                + G+ S   C+DCGNRAKK+C ++RCRTCCK RG  CS
Sbjct: 121 NNGDGDGYDHEREEEAQMVESDEGGNTSSRACKDCGNRAKKDCGFKRCRTCCKARGFDCS 180

Query: 181 THVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSS--SAGAKRPRVLIPSQSAAAAA 240
           THV+STWVPA+RRRER  ++V+ G +   G GG  GSS  S+G KRPR+L+PSQ    + 
Sbjct: 181 THVRSTWVPASRRRERHEMMVL-GSSAGGGAGGGDGSSGSSSGVKRPRILVPSQIGNNSG 240

Query: 241 A-ASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATV 300
           + ASTSN  TPRSF+   +HQDASFK+SLPG VR+ AVFRCHRVTAIS+GE ELAYQATV
Sbjct: 241 SHASTSNVNTPRSFDFGYAHQDASFKQSLPGKVRSSAVFRCHRVTAISNGEAELAYQATV 300

Query: 301 NIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHR 303
            I GHVF+G+LYD G D+K+AFP IS LHL+     R
Sbjct: 301 RISGHVFRGYLYDHGVDEKSAFPCISALHLEGSTSRR 332

[Close]
BLAST of Csa5G623840 vs. NCBI nr
Match: gi|702425744|ref|XP_010067729.1| (PREDICTED: LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1 [Eucalyptus grandis])

HSP 1 Score: 299.7 bits (766), Expect = 5.9e-78
Identity = 169/309 (54.69%), Postives = 197/309 (63.75%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISS--DHHPSLP---LPSSTALGVSVGIFPLLAATP- 60
           MLGLRDV+FI P  S  HQQ Q   S  DHHP  P   LPSSTALGV V IFPLL A P 
Sbjct: 17  MLGLRDVVFIGPPSSLHHQQPQQPPSVSDHHPHHPNFHLPSSTALGVGVSIFPLLTAAPY 76

Query: 61  --CLPPSQPPPNNHTPDDVTD----RTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHV 120
                   P  NN++  + T     R     +  +    G G+ ES      N G     
Sbjct: 77  NVVEDCGNPNANNNSEANGTANFWRRCEVQSSFSKKDALGVGEDES------NKGEKPEE 136

Query: 121 KGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLV 180
            G     ++ VC+DCGNRAKKEC YRRCRTCCK RG  CSTHV+STWVPAARRRERQM +
Sbjct: 137 IGGLSSSNLRVCKDCGNRAKKECSYRRCRTCCKSRGYDCSTHVRSTWVPAARRRERQMAM 196

Query: 181 VMDGVATASGDGGSSGSSSAGA---KRPRVLIPSQSAAAAAAASTSNATTPRSFETTS-S 240
           +  G    +G GG  G++  G    + P+++  S +  A  A+STSNATTPRSF+T+S  
Sbjct: 197 MGIGFGAGAGGGGEGGAAGGGGGSXRDPKLVDGSSNHGATNASSTSNATTPRSFDTSSCH 256

Query: 241 HQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 294
           HQDASFK+SLPG VRAPAVFRC RVTAIS    E AYQATV+I GHVF+GFLYDQG D+K
Sbjct: 257 HQDASFKQSLPGQVRAPAVFRCIRVTAISDNAAEFAYQATVSISGHVFRGFLYDQGLDEK 316

[Close]
BLAST of Csa5G623840 vs. NCBI nr
Match: gi|764628661|ref|XP_011469358.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 296.6 bits (758), Expect = 5.0e-77
Identity = 164/309 (53.07%), Postives = 198/309 (64.08%), Query Frame = 1 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRD+L IAP  SS+HQQTQ ISSDH     LPSSTALGV +GIFPLL ATPC  PS 
Sbjct: 1   MLGLRDILLIAPNASSMHQQTQPISSDH-----LPSSTALGVGLGIFPLLTATPC-GPSA 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGS---- 120
           P    +  +      RT+  L  ++      G    +       D ++ GD G G     
Sbjct: 61  PTAEGNPDNSRFWSLRTYPELNSSKQDMLSFGNHAESQQVVKSDDRNLNGDGGGGGEESG 120

Query: 121 MAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQM---LVVMDGV 180
           +  C+DCGNRAKK CEY RCRTCC+GRG  CSTHV+STWVPAARRRERQM   + V   V
Sbjct: 121 LRACKDCGNRAKKGCEYTRCRTCCRGRGYDCSTHVRSTWVPAARRRERQMGVTVAVTGDV 180

Query: 181 ATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKS 240
           A+  G  GSSGSSS  AKRPR ++ S++A+ A+                    +A+ ++S
Sbjct: 181 ASGGGGEGSSGSSSV-AKRPRFMMSSKNASTAS--------------------NANLRQS 240

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
           LP  VRAPAVF+CHRVTAIS+GE E+AYQATV I GHVFKG LYD+G D KN +P ISHL
Sbjct: 241 LPDQVRAPAVFKCHRVTAISNGEAEIAYQATVKISGHVFKGLLYDRGIDKKNEYPCISHL 282

Query: 301 HLDSGNHHR 303
           HL SG++ R
Sbjct: 301 HLGSGSNQR 282

The following BLAST results are available for this feature:
BLAST of Csa5G623840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LRP1_ARATH3.8e-6145.95Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1[more]
SRS2_ARATH1.2e-3548.78Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1[more]
SRS6_ARATH3.1e-3444.83Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1[more]
SRS1_ARATH1.7e-3243.46Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2[more]
SRS7_ARATH1.9e-3142.08Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1[more]
BLAST of Csa5G623840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWX6_CUCSA5.6e-176100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1[more]
A0A0L9UIA1_PHAAN2.8e-7454.14Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g003000 PE=4 SV=1[more]
A0A0S3SKJ2_PHAAN2.8e-7454.14Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G233000 PE=... [more]
G7LG16_MEDTR2.8e-7453.14LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_8g039110 PE=4... [more]
G7J0K6_MEDTR1.0e-7350.32LRP1 carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_3g014660 PE=4... [more]
BLAST of Csa5G623840 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12330.42.2e-6245.95 Lateral root primordium (LRP) protein-related[more]
AT4G36260.17.0e-3748.78 Lateral root primordium (LRP) protein-related[more]
AT3G54430.11.7e-3544.83 SHI-related sequence 6[more]
AT3G51060.19.5e-3443.46 Lateral root primordium (LRP) protein-related[more]
AT1G19790.11.0e-3242.08 SHI-related sequence 7[more]
BLAST of Csa5G623840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449461|ref|XP_004142483.1|8.0e-176100.00PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus][more]
gi|659092229|ref|XP_008446964.1|2.3e-17599.67PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo][more]
gi|1009119153|ref|XP_015876225.1|1.6e-8351.93PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba][more]
gi|702425744|ref|XP_010067729.1|5.9e-7854.69PREDICTED: LOW QUALITY PROTEIN: protein LATERAL ROOT PRIMORDIUM 1 [Eucalyptus gr... [more]
gi|764628661|ref|XP_011469358.1|5.0e-7753.07PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1 [Fragaria vesca subsp. v... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006510Znf_LRP1
IPR006511SHI_C
IPR007818SHI
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161916cucumber EST collection version 3.0transcribed_cluster
CU166356cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G623840.1Csa5G623840.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161916CU161916transcribed_cluster
CU166356CU166356transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMsTIGR01623TIGR01623coord: 119..161
score: 1.4
IPR006511Lateral Root Primordium type 1, C-terminalTIGRFAMsTIGR01624TIGR01624coord: 234..280
score: 3.4
IPR007818Protein of unknown function DUF702PFAMPF05142DUF702coord: 118..282
score: 9.6
NoneNo IPR availablePANTHERPTHR31604FAMILY NOT NAMEDcoord: 2..299
score: 1.8E
NoneNo IPR availablePANTHERPTHR31604:SF2PROTEIN SHI RELATED SEQUENCE 6coord: 2..299
score: 1.8E