CmoCh18G008640 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh18G008640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLateral root primordium protein-related, putative
LocationCmo_Chr18 : 9957782 .. 9959612 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTTGTCACTGCAGAGTTTGGAGAATTATTCATTCCACTTCATCTTCTTCCTTTTTTTCTCTCCTCTGTTAATGTGAATTCAGAGAAATTCCCCGCCATGAACACACCAACATCATTGCATTTGCTTTCCTCTTAACAAATTTATTCATCGTTTAAGTACTGTTCTTCCCAAATCTGAAACACCCTCTTCAGTTTGTTCCAATCAATCATCTTCTTCACTCTGTTTTTCAATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGGTGGTTCTCTCTGTTTCTCTCTGTTTTCCTCTGTTTCTCTCTGATTCTCTCTGTTTCTCTCTGTTTCTCTGTGTGTAATGATTTGTTTATCTGTTCTTGAGAAAACCCAACAATCTTTTCATATTTCACTCTGTTTTCCTCATGATCTTGAATTCAGTAGATTCAAATTGTTCATCTTTAAATCTGCTCTGTTTCTGGAACTCTGATGGCTTTTGACAACAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAGACACATTCCTCTTCTTTCTTCCTAAACTCTTCGTCCTAACGATTACCCGAAACCTCGGTCTCACCTCGGCTCTCGGCTCTCGGCTCTCGGCTCGGAACCTTGAAAGATATCATATCTCTACTAGGATGAAGCAAGCAAGCTTGCTTGCCCCCATCTCTTGTTTGATTGTCTATCTAAGAAACGCTCGTAACCGTCGAGTATCTACTTGTGAATGCTAAATTTTAGCTACAACTTCAAATATTGTCACCGATATGGATCTTTTCTAATTATGATTAAGACCGTGTTCATCGTGAATATGTAGGAAGCTATATGCATGAAGTCGAAGCCAACCCGAGAAGGCAAACAAAATCCATAGCTCACTATCACACCCTAGTCTTTTCATGTATTATTGGCCCCTCATTGTACAAAGAGTAGGAAACGACCCGACTACATATCATAGCAAATAGCAAAGAAATGTGACTAAACGGTACGCAAAAAAGATGTTCGAGAACCCAATGGCAAATGGGTTTAAGCTAT

mRNA sequence

AACTTTGTCACTGCAGAGTTTGGAGAATTATTCATTCCACTTCATCTTCTTCCTTTTTTTCTCTCCTCTGTTAATGTGAATTCAGAGAAATTCCCCGCCATGAACACACCAACATCATTGCATTTGCTTTCCTCTTAACAAATTTATTCATCGTTTAAGTACTGTTCTTCCCAAATCTGAAACACCCTCTTCAGTTTGTTCCAATCAATCATCTTCTTCACTCTGTTTTTCAATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAGACACATTCCTCTTCTTTCTTCCTAAACTCTTCGTCCTAACGATTACCCGAAACCTCGGTCTCACCTCGGCTCTCGGCTCTCGGCTCTCGGCTCGGAACCTTGAAAGATATCATATCTCTACTAGGATGAAGCAAGCAAGCTTGCTTGCCCCCATCTCTTGTTTGATTGTCTATCTAAGAAACGCTCGTAACCGTCGAGTATCTACTTGTGAATGCTAAATTTTAGCTACAACTTCAAATATTGTCACCGATATGGATCTTTTCTAATTATGATTAAGACCGTGTTCATCGTGAATATGTAGGAAGCTATATGCATGAAGTCGAAGCCAACCCGAGAAGGCAAACAAAATCCATAGCTCACTATCACACCCTAGTCTTTTCATGTATTATTGGCCCCTCATTGTACAAAGAGTAGGAAACGACCCGACTACATATCATAGCAAATAGCAAAGAAATGTGACTAAACGGTACGCAAAAAAGATGTTCGAGAACCCAATGGCAAATGGGTTTAAGCTAT

Coding sequence (CDS)

ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATTTCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTTGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG
Homology
[Close]
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match: LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.1e-49
Identity = 130/302 (43.05%), Postives = 175/302 (57.95%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ
Sbjct: 3   MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTAGT-----PQ 62

Query: 61  PPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGDKGD-----AGESSMAVCRD 120
                +        R  +N    H+     F   +    G   +     +G S  A C+D
Sbjct: 63  QNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQD 122

Query: 121 CGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGS 180
           CGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GS
Sbjct: 123 CGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT-----GANPTAGS 182

Query: 181 SGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDAS-FKKSLPGQVRA 240
           S S+S+G K+PR++   Q     A+  +++  T  +SFET+S+ QD    +++ PGQVRA
Sbjct: 183 SLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRA 242

Query: 241 PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS 285
            AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Sbjct: 243 AAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLHLGGSA 290

[Close]
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match: SRS6_ARATH (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.6e-32
Identity = 83/187 (44.39%), Postives = 106/187 (56.68%), Query Frame = 1 

Query: 89  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQML 148
           D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R     
Sbjct: 32  DNNTVGEK---VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS---- 91

Query: 149 VVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQ 208
                            SSS   ++ ++ I  QS+P  +               TT++ Q
Sbjct: 92  -----------------SSSPSERKKKLKIDKQSSPNVSL------------LPTTTSRQ 151

Query: 209 DASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHK 268
           +  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH 
Sbjct: 152 ERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG-VDHN 181

Query: 269 NGYPSLS 275
             +P LS
Sbjct: 212 KAFPCLS 181

[Close]
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match: SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-30
Identity = 82/179 (45.81%), Postives = 106/179 (59.22%), Query Frame = 1 

Query: 89  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER 148
           D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRER
Sbjct: 79  DVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRER 138

Query: 149 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTS 208
           Q  + M    + SG GG SGS  AG           S P    H   ++  TS S    S
Sbjct: 139 QQQLHM----STSGGGGGSGSGGAGG-------GGSSIP--KRHRDPTLPGTSSSSRLPS 198

Query: 209 NHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 263
           +       + S PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 199 HSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

[Close]
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-26
Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 1 

Query: 101 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGD 160
           C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ  +     +T    
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQL-----STGQQP 179

Query: 161 GGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV 220
               GS     KR R  IP++ST         S+A T      TS  +  +F    P +V
Sbjct: 180 QQLGGSVP---KRQRERIPARST---------SMAYTRIPSNNTSGLEVGNF----PPEV 239

Query: 221 RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKN 269
            + AVFR  RV+++   E E AY+  V+IGGHVFKG LYDQG  +  +
Sbjct: 240 SSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 266

[Close]
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-26
Identity = 88/246 (35.77%), Postives = 118/246 (47.97%), Query Frame = 1 

Query: 18  HHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDF 77
           H   L L+S AA G+ VG                 P N    ++S  T +          
Sbjct: 87  HQQRLDLYSSAA-GLGVG-----------------PSNHNQFDISGETSTA--------- 146

Query: 78  GFGKGDSFIAGDKGDAGESSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTW 137
           G G+  + +    G +G  S  V C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STW
Sbjct: 147 GAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTW 206

Query: 138 VPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIAT 197
           VPA++RRERQ  +      T    G S        KR R  +P+ S+    +   +    
Sbjct: 207 VPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCTRIPSHSGL 266

Query: 198 TSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKG 257
              +F               P +V + AVFR  RV+++  GE E AYQ  V+IGGH+FKG
Sbjct: 267 EVGNF---------------PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKG 284

Query: 258 FLYDQG 263
            LYD G
Sbjct: 327 ILYDLG 284

[Close]
BLAST of CmoCh18G008640 vs. TrEMBL
Match: A0A0A0KWX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.5e-122
Identity = 240/305 (78.69%), Postives = 257/305 (84.26%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S  ALGVSVGIFPLLAATP LPP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  QPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
            PP N T ++V+DRTR+ +NLK+T DFGFGKG+S IAG          KGDAG+ SMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVR 240
           GSSGSSSAGAKRPRVLIPSQS  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VR
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAA-ASTSNATTPRSFETTSSHQDASFKKSLPGHVR 240

Query: 241 APAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG 287
           APAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Sbjct: 241 APAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG-ADDKNAFPSISHLHLDSG 300

[Close]
BLAST of CmoCh18G008640 vs. TrEMBL
Match: A0A0B0NYZ5_GOSAR (tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arboreum GN=F383_03543 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.8e-59
Identity = 151/312 (48.40%), Postives = 193/312 (61.86%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLH------------------SPAALGVSVGIFPLLAA 60
           M+GLRD + +AP ++ +HH     H                  + AA  + VG+ PLL A
Sbjct: 111 MVGLRDFVVVAPAASFNHHHHHHHHHTQDPIMVNEQINGPSSAAAAATALGVGVIPLLTA 170

Query: 61  TPSLPPPP----------QPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGD 120
           +P LPP            Q   NQ++     +  SL +   +   G G G   + G  G 
Sbjct: 171 SPCLPPQNVEDTGKFSGMQLWQNQSSSHYLKKPASLLDNNPSMMAGDGGG---MGGGSGG 230

Query: 121 AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMD 180
           +G SS A C+DCGN+AKK+C +RRCRTCCK RG  C THVKSTWVPA+RRRERQ+   M 
Sbjct: 231 SGSSSGATCQDCGNQAKKDCTHRRCRTCCKSRGLDCPTHVKSTWVPAARRRERQL---MS 290

Query: 181 GVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASF 240
             AT +G  GSSGS+S GAK+PR L+ SQ+T    SH S S  T  RSF+T+S+HQD  F
Sbjct: 291 AAATTAG-AGSSGSTS-GAKKPR-LVTSQTT--TTSHTSTSNTTPPRSFDTSSSHQDVGF 350

Query: 241 KKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPS 285
           K++LPGQVRAPAVF+  RVTA+  GE E AYQA V IGGHVFKGFLYDQG V+ ++G+P+
Sbjct: 351 KETLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQG-VEGRDGFPN 410

[Close]
BLAST of CmoCh18G008640 vs. TrEMBL
Match: A0A0D2RRP9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G014800 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.9e-59
Identity = 152/310 (49.03%), Postives = 191/310 (61.61%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLH---------------SPAALGVS---VGIFPLLAA 60
           M+GLRD + +AP ++ +HH     H               S AA  V+   VG+ PLL A
Sbjct: 99  MVGLRDFVVVAPAASFNHHHHHHHHHTQDPIMVNEQINGPSSAAAAVTALGVGVIPLLTA 158

Query: 61  TPSLPPPPQPPPNQ-TAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-------KGDAG 120
            P LPP       + +  ++     S   LKK   F      S +AGD        G +G
Sbjct: 159 APCLPPQNVEDTGKFSGIQLWQNQSSSHYLKKPASFLDNSNPSMMAGDGGGMGGGSGGSG 218

Query: 121 ESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGV 180
            SS A C+DCGN+AKK+C +RRCRTCCK RG  C THVKSTWVPA+RRRERQ+   M   
Sbjct: 219 SSSGATCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQL---MSAA 278

Query: 181 ATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKK 240
           AT +G  GSSGS+S GAK+PR L+ SQ+T    SH S S  T  RSF+T+S+HQD   K+
Sbjct: 279 ATTAG-AGSSGSTS-GAKKPR-LVTSQTT--TTSHTSTSNTTPPRSFDTSSSHQDVGLKE 338

Query: 241 SLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS 285
           +LPGQVRAPAVF+  RVTA+  GE E AYQA V IGGHVFKGFLYDQG V+ ++G+P++S
Sbjct: 339 TLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQG-VEGRDGFPNIS 398

[Close]
BLAST of CmoCh18G008640 vs. TrEMBL
Match: A0A0D2PYF3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G134100 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 9.0e-59
Identity = 150/316 (47.47%), Postives = 192/316 (60.76%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLHSP---------------AALGVSVGIFPLLAATPS 60
           M+GLRD + +AP S + HH     H+                 ALGV VG+FPLL A+P 
Sbjct: 3   MVGLRDFVVVAPASFNHHHHHHHHHAQDPIIGNDQINGQNAATALGVGVGVFPLLTASPC 62

Query: 61  LPPP------------------PQPPPNQTAEE-VSDRTRSLENLKKTHDFGFGKGDSFI 120
           L P                    Q   NQT+   +  ++ +L+N   + +     G   +
Sbjct: 63  LAPQNMEDSDLVNNSGRNKLSGMQLWQNQTSPNYLKKQSSTLDNNNSSMNLIQTSGGGGM 122

Query: 121 AGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQ 180
            G  G +G SS   C+DCGN+AKK+C +RRCRTCCK RG  C THV+STWVPA+RRRERQ
Sbjct: 123 GGGSGGSGTSSGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVRSTWVPAARRRERQ 182

Query: 181 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSN 240
           ++      A A    GSSGS+S GAK+PR L+ SQ+T     H S S  TT RS +T+S+
Sbjct: 183 LMTAAPTTACA----GSSGSTS-GAKKPR-LVTSQTT--TTLHTSTS-NTTPRSLDTSSS 242

Query: 241 HQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDH 283
           HQDA FK++LPGQVRAPAVF+  RVTA+  GE E AYQA V IGGHVFKGFLYDQG V+ 
Sbjct: 243 HQDAGFKETLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQG-VEE 302

[Close]
BLAST of CmoCh18G008640 vs. TrEMBL
Match: A0A0B0MFM4_GOSAR (tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arboreum GN=F383_06434 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.0e-58
Identity = 157/324 (48.46%), Postives = 194/324 (59.88%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTSDHHSSLPLH----------------SPAALGVSVGIFPLLAATP 60
           M+GLRD + +AP S + HH     H                +  ALGV VG+FPLL A P
Sbjct: 3   MVGLRDFVVVAPASFNHHHHHHHHHHTQDPIMSNDQISGPSASTALGVGVGVFPLLTAAP 62

Query: 61  SLPPPPQPPP----NQTAEEVS------DRTRSLEN-LKKTHDF---------------- 120
            L P     P    N    ++S      D+  S  N LKK   F                
Sbjct: 63  CLAPLNVEDPDLFNNNGRTKLSGMQLWQDQNSSPHNYLKKPSSFPDSNNSSSMKLIQSSG 122

Query: 121 GFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWV 180
           G G GD    G+ G +G SS   C+DCGN+AKK+C +RRCRTCCK RG  C THVKSTWV
Sbjct: 123 GGGIGD----GESGGSGSSSATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVKSTWV 182

Query: 181 PASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATT 240
           PA+RRRERQ++      A  +   GSSGS+S GAK+PR LI SQ+T    SH S S  TT
Sbjct: 183 PAARRRERQLMAA----AVTTAGAGSSGSTS-GAKKPR-LITSQNT--TTSHTSTS-NTT 242

Query: 241 SRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGF 282
            RSF+T+S++QDA FK++LPGQVRAPAVF+  RVTA+  G+ E AYQA V IGGHVFKGF
Sbjct: 243 PRSFDTSSSNQDAGFKETLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGF 302

[Close]
BLAST of CmoCh18G008640 vs. TAIR10
Match: AT5G12330.4 (AT5G12330.4 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-50
Identity = 130/302 (43.05%), Postives = 175/302 (57.95%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQ 60
           M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ
Sbjct: 90  MVGLRDVFLVAPAYHHQNAGVISGSDHMNS---NAAAAAALGVGVIPLLTAGT-----PQ 149

Query: 61  PPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGDKGD-----AGESSMAVCRD 120
                +        R  +N    H+     F   +    G   +     +G S  A C+D
Sbjct: 150 QNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGTATCQD 209

Query: 121 CGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGS 180
           CGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GS
Sbjct: 210 CGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPT-----GANPTAGS 269

Query: 181 SGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDAS-FKKSLPGQVRA 240
           S S+S+G K+PR++   Q     A+  +++  T  +SFET+S+ QD    +++ PGQVRA
Sbjct: 270 SLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRA 329

Query: 241 PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS 285
            AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Sbjct: 330 AAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG-LEPKEGFPSMSDLHLGGSA 377

[Close]
BLAST of CmoCh18G008640 vs. TAIR10
Match: AT3G54430.1 (AT3G54430.1 SHI-related sequence 6)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-33
Identity = 83/187 (44.39%), Postives = 106/187 (56.68%), Query Frame = 1 

Query: 89  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQML 148
           D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R     
Sbjct: 32  DNNTVGEK---VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATRS---- 91

Query: 149 VVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQ 208
                            SSS   ++ ++ I  QS+P  +               TT++ Q
Sbjct: 92  -----------------SSSPSERKKKLKIDKQSSPNVSL------------LPTTTSRQ 151

Query: 209 DASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHK 268
           +  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH 
Sbjct: 152 ERGFREGLPGKIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYG-VDHN 181

Query: 269 NGYPSLS 275
             +P LS
Sbjct: 212 KAFPCLS 181

[Close]
BLAST of CmoCh18G008640 vs. TAIR10
Match: AT4G36260.1 (AT4G36260.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-31
Identity = 82/179 (45.81%), Postives = 106/179 (59.22%), Query Frame = 1 

Query: 89  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRER 148
           D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRER
Sbjct: 79  DVSDLATSSRSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRER 138

Query: 149 QMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTS 208
           Q  + M    + SG GG SGS  AG           S P    H   ++  TS S    S
Sbjct: 139 QQQLHM----STSGGGGGSGSGGAGG-------GGSSIP--KRHRDPTLPGTSSSSRLPS 198

Query: 209 NHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG 263
           +       + S PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Sbjct: 199 HSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

[Close]
BLAST of CmoCh18G008640 vs. TAIR10
Match: AT5G66350.1 (AT5G66350.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 75/168 (44.64%), Postives = 98/168 (58.33%), Query Frame = 1 

Query: 101 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGD 160
           C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ  +     +T    
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQL-----STGQQP 179

Query: 161 GGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV 220
               GS     KR R  IP++ST         S+A T      TS  +  +F    P +V
Sbjct: 180 QQLGGSVP---KRQRERIPARST---------SMAYTRIPSNNTSGLEVGNF----PPEV 239

Query: 221 RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKN 269
            + AVFR  RV+++   E E AY+  V+IGGHVFKG LYDQG  +  +
Sbjct: 240 SSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 266

[Close]
BLAST of CmoCh18G008640 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-27
Identity = 88/246 (35.77%), Postives = 118/246 (47.97%), Query Frame = 1 

Query: 18  HHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDF 77
           H   L L+S AA G+ VG                 P N    ++S  T +          
Sbjct: 87  HQQRLDLYSSAA-GLGVG-----------------PSNHNQFDISGETSTA--------- 146

Query: 78  GFGKGDSFIAGDKGDAGESSMAV-CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTW 137
           G G+  + +    G +G  S  V C+DCGN+AKK+C + RCRTCCK RG  CSTHV+STW
Sbjct: 147 GAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTW 206

Query: 138 VPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIAT 197
           VPA++RRERQ  +      T    G S        KR R  +P+ S+    +   +    
Sbjct: 207 VPAAKRRERQQQLATVQPQTQLPRGESV------PKRHRENLPATSSSLVCTRIPSHSGL 266

Query: 198 TSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKG 257
              +F               P +V + AVFR  RV+++  GE E AYQ  V+IGGH+FKG
Sbjct: 267 EVGNF---------------PAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKG 284

Query: 258 FLYDQG 263
            LYD G
Sbjct: 327 ILYDLG 284

[Close]
BLAST of CmoCh18G008640 vs. NCBI nr
Match: gi|449449461|ref|XP_004142483.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 2.2e-122
Identity = 240/305 (78.69%), Postives = 257/305 (84.26%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S  ALGVSVGIFPLLAATP LPP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  QPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
            PP N T ++V+DRTR+ +NLK+T DFGFGKG+S IAG          KGDAG+ SMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVR 240
           GSSGSSSAGAKRPRVLIPSQS  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VR
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAA-ASTSNATTPRSFETTSSHQDASFKKSLPGHVR 240

Query: 241 APAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG 287
           APAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Sbjct: 241 APAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG-ADDKNAFPSISHLHLDSG 300

[Close]
BLAST of CmoCh18G008640 vs. NCBI nr
Match: gi|659092229|ref|XP_008446964.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 445.7 bits (1145), Expect = 6.3e-122
Identity = 239/305 (78.36%), Postives = 256/305 (83.93%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTS----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPP 60
           MLGLRDVLF+APT +S          DHH SLPL S  ALGVSVGIFPLLAATP LPP  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  QPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD---------KGDAGESSMAVC 120
            PP N T ++V+DRTR+ +NLK+T DFGFGKG+S I G          KGDAG+ SMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVR 240
           GSSGSSSAGAKRPRVLIPSQS  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VR
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAA-ASTSNATTPRSFETTSSHQDASFKKSLPGHVR 240

Query: 241 APAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG 287
           APAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Sbjct: 241 APAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG-ADDKNAFPSISHLHLDSG 300

[Close]
BLAST of CmoCh18G008640 vs. NCBI nr
Match: gi|1009119153|ref|XP_015876225.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 263.5 bits (672), Expect = 4.4e-67
Identity = 162/336 (48.21%), Postives = 204/336 (60.71%), Query Frame = 1 

Query: 1   MLGLRDVLFLAP---------TSTSDHH-----SSLPLHSPAALGVSVGIFPLLAATPSL 60
           MLGLRDVLF+AP         +S+SDH+     +++PL S  +LGV +GIFPLL ATP +
Sbjct: 1   MLGLRDVLFIAPQNQTTINISSSSSDHNHHHHQTNIPLPSSTSLGVGLGIFPLLTATPCV 60

Query: 61  PPPPQPPPNQTAEEVSDRTRSLEN------LKKTHDFGFGKGDS---------------- 120
             PP PPP Q    ++  +    +      LKK  +    K D                 
Sbjct: 61  TTPPPPPPPQPNPNINHPSSCNPDAYHYWSLKKFQELNSSKQDDHHHQNQLLLGPNNNGD 120

Query: 121 -------------FIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTH 180
                         +  D+G  G +S   C+DCGNRAKK+C ++RCRTCCK RG  CSTH
Sbjct: 121 GDGYDHEREEEAQMVESDEG--GNTSSRACKDCGNRAKKDCGFKRCRTCCKARGFDCSTH 180

Query: 181 VKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSS--SAGAKRPRVLIPSQSTPAAASH 240
           V+STWVPASRRRER  ++V+ G +   G GG  GSS  S+G KRPR+L+PSQ    + SH
Sbjct: 181 VRSTWVPASRRRERHEMMVL-GSSAGGGAGGGDGSSGSSSGVKRPRILVPSQIGNNSGSH 240

Query: 241 ASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNI 286
           AS S   T RSF+    HQDASFK+SLPG+VR+ AVFR HRVTAIS+GE ELAYQATV I
Sbjct: 241 ASTSNVNTPRSFDFGYAHQDASFKQSLPGKVRSSAVFRCHRVTAISNGEAELAYQATVRI 300

[Close]
BLAST of CmoCh18G008640 vs. NCBI nr
Match: gi|694394776|ref|XP_009372746.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 247.7 bits (631), Expect = 2.5e-62
Identity = 162/319 (50.78%), Postives = 187/319 (58.62%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTS-----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPP 60
           MLGLRD+L +APT TS           DHH++LPL S AALGV +GIFPLL ATP  P  
Sbjct: 1   MLGLRDILLIAPTPTSLHHQQHQPISSDHHTALPLPSSAALGVGLGIFPLLTATPHAP-- 60

Query: 61  PQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAG--------------- 120
                  TAE  SD T     L+K  D    K D    G++   G               
Sbjct: 61  -------TAEGNSD-TSHYWGLRKYQDPNSSKQDMLNFGNQNHGGAQQHEQVVDCHGNND 120

Query: 121 --------ESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQ 180
                    S+M  C+DCGNRAKK CEYRRCRTCC+GRG HCSTHVKSTWVPASRRRERQ
Sbjct: 121 RDGAGGGKSSNMKACKDCGNRAKKGCEYRRCRTCCRGRGYHCSTHVKSTWVPASRRRERQ 180

Query: 181 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSN 240
            +V +  V    G  GSSGSSS  AKRPRV +PSQ+            A+T         
Sbjct: 181 NMVTV-AVPGVGGGEGSSGSSSV-AKRPRVSVPSQN------------AST--------- 240

Query: 241 HQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDH 286
             DA+ K+SLP +VRAPAVFR HRVTAIS+GE ELAYQATV I GHVF+G LYD G VD 
Sbjct: 241 --DANVKRSLPDKVRAPAVFRCHRVTAISNGEAELAYQATVKISGHVFRGLLYDHG-VDE 283

[Close]
BLAST of CmoCh18G008640 vs. NCBI nr
Match: gi|694394779|ref|XP_009372747.1| (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 245.7 bits (626), Expect = 9.5e-62
Identity = 159/319 (49.84%), Postives = 184/319 (57.68%), Query Frame = 1 

Query: 1   MLGLRDVLFLAPTSTS-----------DHHSSLPLHSPAALGVSVGIFPLLAATPSLPPP 60
           MLGLRD+L +APT TS           DHH++LPL S AALGV +GIFPLL ATP  P  
Sbjct: 1   MLGLRDILLIAPTPTSLHHQQHQPISSDHHTALPLPSSAALGVGLGIFPLLTATPHAP-- 60

Query: 61  PQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAG--------------- 120
                  TAE  SD T     L+K  D    K D    G++   G               
Sbjct: 61  -------TAEGNSD-TSHYWGLRKYQDPNSSKQDMLNFGNQNHGGAQQHEQVVDCHGNND 120

Query: 121 --------ESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQ 180
                    S+M  C+DCGNRAKK CEYRRCRTCC+GRG HCSTHVKSTWVPASRRRERQ
Sbjct: 121 RDGAGGGKSSNMKACKDCGNRAKKGCEYRRCRTCCRGRGYHCSTHVKSTWVPASRRRERQ 180

Query: 181 MLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSN 240
            +V +  V    G  GSSGSSS  AKRPRV +PSQ+                        
Sbjct: 181 NMVTV-AVPGVGGGEGSSGSSSV-AKRPRVSVPSQNA----------------------- 240

Query: 241 HQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDH 286
             +A+ K+SLP +VRAPAVFR HRVTAIS+GE ELAYQATV I GHVF+G LYD G VD 
Sbjct: 241 --NANVKRSLPDKVRAPAVFRCHRVTAISNGEAELAYQATVKISGHVFRGLLYDHG-VDE 281

The following BLAST results are available for this feature:
BLAST of CmoCh18G008640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LRP1_ARATH7.1e-4943.05Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1[more]
SRS6_ARATH4.6e-3244.39Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=SRS6 PE=2 SV=1[more]
SRS2_ARATH1.9e-3045.81Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=SRS2 PE=2 SV=1[more]
SHI_ARATH2.2e-2644.64Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1[more]
SRS1_ARATH4.9e-2635.77Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2[more]
BLAST of CmoCh18G008640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWX6_CUCSA1.5e-12278.69Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623840 PE=4 SV=1[more]
A0A0B0NYZ5_GOSAR1.8e-5948.40tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arbor... [more]
A0A0D2RRP9_GOSRA6.9e-5949.03Uncharacterized protein OS=Gossypium raimondii GN=B456_004G014800 PE=4 SV=1[more]
A0A0D2PYF3_GOSRA9.0e-5947.47Uncharacterized protein OS=Gossypium raimondii GN=B456_001G134100 PE=4 SV=1[more]
A0A0B0MFM4_GOSAR2.0e-5848.46tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein OS=Gossypium arbor... [more]
BLAST of CmoCh18G008640 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12330.44.0e-5043.05 Lateral root primordium (LRP) protein-related[more]
AT3G54430.12.6e-3344.39 SHI-related sequence 6[more]
AT4G36260.11.1e-3145.81 Lateral root primordium (LRP) protein-related[more]
AT5G66350.11.2e-2744.64 Lateral root primordium (LRP) protein-related[more]
AT3G51060.12.8e-2735.77 Lateral root primordium (LRP) protein-related[more]
BLAST of CmoCh18G008640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449461|ref|XP_004142483.1|2.2e-12278.69PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus][more]
gi|659092229|ref|XP_008446964.1|6.3e-12278.36PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo][more]
gi|1009119153|ref|XP_015876225.1|4.4e-6748.21PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Ziziphus jujuba][more]
gi|694394776|ref|XP_009372746.1|2.5e-6250.78PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Pyrus x bretschnei... [more]
gi|694394779|ref|XP_009372747.1|9.5e-6249.84PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Pyrus x bretschnei... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006510Znf_LRP1
IPR006511SHI_C
IPR007818SHI
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G008640.1CmoCh18G008640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMsTIGR01623TIGR01623coord: 100..142
score: 1.9
IPR006511Lateral Root Primordium type 1, C-terminalTIGRFAMsTIGR01624TIGR01624coord: 216..263
score: 2.7
IPR007818Protein of unknown function DUF702PFAMPF05142DUF702coord: 99..263
score: 8.7
NoneNo IPR availablePANTHERPTHR31604FAMILY NOT NAMEDcoord: 1..282
score: 7.6E
NoneNo IPR availablePANTHERPTHR31604:SF2PROTEIN SHI RELATED SEQUENCE 6coord: 1..282
score: 7.6E