Lsi02G011930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G011930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	chr02 : 15037106 .. 15039095 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCATTGTCACCTTATATAAATCTATCTTGTTTGTGAAGCCAAAAAAGAAAAAAACTATTGACCCAACAAAAATATATGTTATTCAAACTCTTGACTTTACAAACCTCCATCCAAGCCTCTTTCTTTCTCTTCTTTCTCTTACAACAATGACGGTAAAGGATTGCGACCACCACCACCACCACGACTGCGAGCGCCGTCGTCTCTACCGTCGAATAGCCTGTGCCATCTTCACTGTGGTCCTTTTGATTGGCCTAGTCATCTTTCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGCCTCATCCTCCAAGACGTCACCCTTTTTGGCCTGAACGTCTCGTCAGTGCCACCCACCGCCATCTCAACGACCATGCAGATCACCATCTCCTCCCATAACCCCAACACCCGCATTGGCGTTTACTACCAGCTCATGGATGTCTACGCCGCCTACCGTGGCCAGCAGGTCACTCTTCCGACGCTGTTGCCGCCAACTTATCAAGGCCACAATGATGTTACCGTTTGGTCTCCATTTTTGTACGGTGAAGCCGTGCCGGTGGCGCCGGAGTTTGCTGAAGCTTTGAACGAGGATAATAATGTTGGAGCAATGCTGTTCAATATCAAGGTCAATGGACAGGTTTGTTCAATTTCTACTTTCACCCACAAGTTCTTTATCTTTCTTTAGGGTTCCATTTTCATAGCTAAACTTCTCATTTTGATTTTAAATTTAATTTTTACAAGTTTGGTTTAAAGGTTTTTCAAGTGTTGGTTTTGGTCTTTCAATATTGTTTATACATCTTATTTGGGTATTTCTAATTTTAAAATATTTCTATTTTAGTTTCTAATTTTTTTTTTAAAGAAAATAATATTTTGGTCTTTTTACGTTTTACCATTTTTTTTAAGTGATCATGTATGAAACCAAATAGGTTGGTTGGTAGAGTAGATATATTAGGTGAAAAGACGATCCTAATTTGAATGATAAAAAAGAATAAGTTATAGGTTAAAAAACACGTTTCATCTCTAAACTTTCATGAAAGTAACAATTTCGTCCTTAGACTTTAGTGGGTAAATAACGATTTAGCCCATTAACTTTCAAATTTGTAACAAGTCCTTCAGCTTTAATAAATAATGAGTTAGTCCATGTACTTATAATTTGTCGTTTTAAAAATTGGTCATTTTGAAAATTTTAGAAAGTAAAATATATATTTTTAAATTTGTGGAACAAATTGAGAAAAAAATCATCTTTAAAATTGAAGGACCAAAATAAGATTTAAACGCTCTTTCTCTTATGTTATATCTGTATTAATATTCTTACTCTTTACTTATAAACATAAAACTTAGCTCAATGCTCATAAGCTAAAAATTACTTAATGTGCAACATTTCTTGGATGCACATTCAAAATGTATTTGTCCCTTAGAAATCATTCGGTATAAGTTTAAATCACATTTTATAATTTCTCCCTCATGCATCTAATGATGAAAAGCTATAAAATGTTTTATTCTATAAATGTTTTATTTTTATTATTAATTTTTGTAAAGCTATAAATATTTTATTAAGAATTTTTATAGTTAAAAGTGTGTTGTCGGGAGATTTGGCGTAATAAAAAAAGTTAGAAGAAAAGAAATTTAATAGACAATAAAATTATATCTATGTATTCGTAATTTGATATTTTATTATTTATGGTCTTGTTGGACAGGTTAGGTGGAAGGTCGGGAGCTGGATCTCAGGCAGATATCGGCTGAACGCGAACTGTCCAGCATATATAAAGTTCGGCGATCCAAAGAATGGAATTGCATTTGGACCAGCAATCAAGTTTCAGTTCGTTCAAGGTTGTTATGTCGATATTTGAGATCTCAAAGTCCACTGATCTTTGTAATTCTTCATTCACTTCTTTTAATTCTCATTCCCATATCCCTTAAAAGTCTCTATTGTAGTTGCCAACAGCAATGAAAATTATTAGAATTATAGTTCTCAATTCTTTTGTTACTA

mRNA sequence

TTCCATTGTCACCTTATATAAATCTATCTTGTTTGTGAAGCCAAAAAAGAAAAAAACTATTGACCCAACAAAAATATATGTTATTCAAACTCTTGACTTTACAAACCTCCATCCAAGCCTCTTTCTTTCTCTTCTTTCTCTTACAACAATGACGGTAAAGGATTGCGACCACCACCACCACCACGACTGCGAGCGCCGTCGTCTCTACCGTCGAATAGCCTGTGCCATCTTCACTGTGGTCCTTTTGATTGGCCTAGTCATCTTTCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGCCTCATCCTCCAAGACGTCACCCTTTTTGGCCTGAACGTCTCGTCAGTGCCACCCACCGCCATCTCAACGACCATGCAGATCACCATCTCCTCCCATAACCCCAACACCCGCATTGGCGTTTACTACCAGCTCATGGATGTCTACGCCGCCTACCGTGGCCAGCAGGTCACTCTTCCGACGCTGTTGCCGCCAACTTATCAAGGCCACAATGATGTTACCGTTTGGTCTCCATTTTTGTACGGTGAAGCCGTGCCGGTGGCGCCGGAGTTTGCTGAAGCTTTGAACGAGGATAATAATGTTGGAGCAATGCTGTTCAATATCAAGGTCAATGGACAGGTTAGGTGGAAGGTCGGGAGCTGGATCTCAGGCAGATATCGGCTGAACGCGAACTGTCCAGCATATATAAAGTTCGGCGATCCAAAGAATGGAATTGCATTTGGACCAGCAATCAAGTTTCAGTTCGTTCAAGGTTGTTATGTCGATATTTGAGATCTCAAAGTCCACTGATCTTTGTAATTCTTCATTCACTTCTTTTAATTCTCATTCCCATATCCCTTAAAAGTCTCTATTGTAGTTGCCAACAGCAATGAAAATTATTAGAATTATAGTTCTCAATTCTTTTGTTACTA

Coding sequence (CDS)

ATGACGGTAAAGGATTGCGACCACCACCACCACCACGACTGCGAGCGCCGTCGTCTCTACCGTCGAATAGCCTGTGCCATCTTCACTGTGGTCCTTTTGATTGGCCTAGTCATCTTTCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGCCTCATCCTCCAAGACGTCACCCTTTTTGGCCTGAACGTCTCGTCAGTGCCACCCACCGCCATCTCAACGACCATGCAGATCACCATCTCCTCCCATAACCCCAACACCCGCATTGGCGTTTACTACCAGCTCATGGATGTCTACGCCGCCTACCGTGGCCAGCAGGTCACTCTTCCGACGCTGTTGCCGCCAACTTATCAAGGCCACAATGATGTTACCGTTTGGTCTCCATTTTTGTACGGTGAAGCCGTGCCGGTGGCGCCGGAGTTTGCTGAAGCTTTGAACGAGGATAATAATGTTGGAGCAATGCTGTTCAATATCAAGGTCAATGGACAGGTTAGGTGGAAGGTCGGGAGCTGGATCTCAGGCAGATATCGGCTGAACGCGAACTGTCCAGCATATATAAAGTTCGGCGATCCAAAGAATGGAATTGCATTTGGACCAGCAATCAAGTTTCAGTTCGTTCAAGGTTGTTATGTCGATATTTGA

Protein sequence

MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLFGLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI

Homology

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BLAST of Lsi02G011930 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-47
Identity = 94/214 (43.93%), Postives = 136/214 (63.55%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MT KDC +H            RI   I   ++++ + IFL+W IL+P+KPR ILQD T++
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  QITI+S N N+RIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+G+Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AIKFQFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

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BLAST of Lsi02G011930 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-12
Identity = 44/157 (28.03%), Postives = 81/157 (51.59%), Query Frame = 1


Query: 27  IFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLFGLNVSSVPPTAISTTMQITISSHNPN 86
           I ++++++G+   + W I+RP   +  + D +L   + +S P   +   + +T+   NPN
Sbjct: 45  IISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS-PDNILRYNLALTVPVRNPN 104

Query: 87  TRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPV-APEFAEAL 146
            RIG+YY  ++ +A Y G++ +  T L P YQGH + TV +P   G+ + +     +  L
Sbjct: 105 KRIGLYYDRIEAHAYYEGKRFSTIT-LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTL 164

Query: 147 NEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANC 183
           N +   G     IK   +VR+K+G     R +   +C
Sbjct: 165 NAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

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BLAST of Lsi02G011930 vs. TrEMBL
Match: A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 2.8e-118
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IFTVVLLIGLVIFLIWAILRPSKPRLILQDVTL 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPP AISTTMQITISSHNPN RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPA+KFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

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BLAST of Lsi02G011930 vs. TrEMBL
Match: A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.1e-73
Identity = 129/213 (60.56%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KD     HH+ + ++  RR+   +  +++++G++IF++WA+LRPSKP  ILQDVT+F
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +Q+TISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPA+IKFG+P   IA G A+KFQ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

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BLAST of Lsi02G011930 vs. TrEMBL
Match: A0A068UGU2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.3e-67
Identity = 120/213 (56.34%), Postives = 159/213 (74.65%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KDC H+ H   E+R+L+RR+  A+   ++LI  +I L+W ILRP+KP  +LQD T++
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  QIT+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            D+TVWSPFLYG +VP+AP + +AL +D   G +L NIKVNG+VRWKVG++ISGRY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYI  G+  +GI  GPAIK+Q VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

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BLAST of Lsi02G011930 vs. TrEMBL
Match: A0A0D2QBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.7e-67
Identity = 122/213 (57.28%), Postives = 159/213 (74.65%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KDC HH     +  +L +RI  AI  V +++G++IFL+WAIL P KPR ILQDVT++
Sbjct: 1   MSAKDCGHHD----DEEQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+++  P  +++ MQIT+SS NPN RIG+YYQ +D++A+Y  QQ+TLPTL+P TYQGH
Sbjct: 61  AFNLTA--PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DVTVWSPFLYG AVPVAP   E L++D N G +L NIKV GQ++WKVG+WISGRY++NA
Sbjct: 121 LDVTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYI F D    I  G A+K+Q VQ C VD+
Sbjct: 181 NCPAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

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BLAST of Lsi02G011930 vs. TrEMBL
Match: V4RS29_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.9e-66
Identity = 121/215 (56.28%), Postives = 161/215 (74.88%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KDC H H    ++++L R I  A+  +++++ L+IFL WAI RPSKP  ILQD TL+
Sbjct: 1   MSEKDCGHSHD---DKKKLVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATLY 60

Query: 61  GLNVSS--VPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQ 120
             N+S+   PP A++T +Q+TI++ NPN +IG+YYQ  DVYA+YR QQ++L TLLP TYQ
Sbjct: 61  AFNLSTGPSPPNALTTNLQVTITTRNPNDKIGIYYQKADVYASYRNQQISLATLLPATYQ 120

Query: 121 GHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRL 180
           GH DV VWSPFLYG +VPV+P  AEAL +D N G ++ NIKV+G+++WKVG+WISGRY L
Sbjct: 121 GHKDVIVWSPFLYGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHL 180

Query: 181 NANCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           + NCPAYI FGD   GIA G ++KFQ VQ C VD+
Sbjct: 181 HVNCPAYITFGDKSKGIASGASVKFQLVQSCSVDV 212

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BLAST of Lsi02G011930 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 240.7 bits (613), Expect = 8.0e-64
Identity = 112/213 (52.58%), Postives = 151/213 (70.89%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MT K+C+HHH  D    ++ +RI   +   +  +  V+FL+WAIL P  PR +LQD T++
Sbjct: 1   MTEKECEHHHDED---EKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS   P  +++ +Q+T+SS NPN +IG++Y  +D+YA+YR QQVTL TLLP TYQGH
Sbjct: 61  AFNVSQ--PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DVT+WSPFLYG  VPVAP F+ AL++D   G +L NIK++G VRWKVG+W+SGRYRL+ 
Sbjct: 121 LDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYI      +G   GPA+K+Q VQ C VD+
Sbjct: 181 NCPAYITLAGHFSG--DGPAVKYQLVQRCAVDV 206

[Close]

BLAST of Lsi02G011930 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-62
Identity = 110/212 (51.89%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 3   VKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLFGL 62
           +KDC++H H    RR+L RRI  +I  V+ +I L I LIWAIL+PSKPR ILQD T++  
Sbjct: 1   MKDCENHGH---SRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAF 60

Query: 63  NVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGHND 122
           NVS  PP  +++  QIT+SS NPN +IG+YY  +DVYA YR QQ+T PT +PPTYQGH D
Sbjct: 61  NVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKD 120

Query: 123 VTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANC 182
           V +WSPF+YG +VP+AP    +L+ D + G +L  I+ +G+VRWKVG++I+G+Y L+  C
Sbjct: 121 VDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 180

Query: 183 PAYIKFGDPKNGIAFGP-AIKFQFVQGCYVDI 214
           PAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 181 PAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of Lsi02G011930 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 230.7 bits (587), Expect = 8.3e-61
Identity = 114/214 (53.27%), Postives = 148/214 (69.16%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLY-RRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTL 60
           MT + CD H+ ++  R R+  RRIA A   +++ +  V+FL+WAIL P  PR +LQDVT+
Sbjct: 1   MTGRYCDQHNGYEERRMRMMMRRIAWACLGLIVAVAFVVFLVWAILHPHGPRFVLQDVTI 60

Query: 61  FGLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQG 120
              NVS   P  +S+ +Q+T+SS NPN +IG++Y  +D+Y  YR Q+VTL  LLP TYQG
Sbjct: 61  NDFNVSQ--PNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQG 120

Query: 121 HNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLN 180
           H +VTVWSPFL G AVPVAP  + ALNED   G +L NIK++G VRWKVGSW+SG YRL+
Sbjct: 121 HLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLH 180

Query: 181 ANCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
            NCPA+I       G   GPAIK+Q VQ C VD+
Sbjct: 181 VNCPAFITVTGKLTGT--GPAIKYQLVQRCAVDV 210

[Close]

BLAST of Lsi02G011930 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-53
Identity = 100/213 (46.95%), Postives = 142/213 (66.67%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MT KDC  H  H    R++   +   I  ++LLI +VI L+WAIL+PSKPR +LQD T+F
Sbjct: 1   MTSKDCGSHDSHSSCNRKI---VIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVF 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS  PP  +++  Q T+SS NPN +IG+YY  +DVYA+YR QQ+TLP+ +  TYQGH
Sbjct: 61  NFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +V VWSPF+ G +VPVAP  A  L++D++ GA++  + ++G+VRWKVGS+I+G+Y L+ 
Sbjct: 121 KEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
            C A I FG    G+  G   K+   + C V +
Sbjct: 181 RCHALINFGSSAAGVIVG---KYMLTETCSVSV 207

[Close]

BLAST of Lsi02G011930 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-49
Identity = 94/214 (43.93%), Postives = 136/214 (63.55%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MT KDC +H            RI   I   ++++ + IFL+W IL+P+KPR ILQD T++
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  QITI+S N N+RIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+G+Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AIKFQFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]

BLAST of Lsi02G011930 vs. NCBI nr
Match: gi|449443654|ref|XP_004139592.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 4.1e-118
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IFTVVLLIGLVIFLIWAILRPSKPRLILQDVTL 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPP AISTTMQITISSHNPN RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPA+KFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]

BLAST of Lsi02G011930 vs. NCBI nr
Match: gi|659127309|ref|XP_008463636.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 429.1 bits (1102), Expect = 4.5e-117
Identity = 204/213 (95.77%), Postives = 209/213 (98.12%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IF+++LLIGLVIFLIWAILRPSKPRLILQDVTL 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFSLLLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPP AISTTMQITISSHNPNTRIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGP +KFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]

BLAST of Lsi02G011930 vs. NCBI nr
Match: gi|449444813|ref|XP_004140168.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 3.1e-73
Identity = 129/213 (60.56%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KD     HH+ + ++  RR+   +  +++++G++IF++WA+LRPSKP  ILQDVT+F
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +Q+TISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPA+IKFG+P   IA G A+KFQ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]

BLAST of Lsi02G011930 vs. NCBI nr
Match: gi|659097380|ref|XP_008449594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 8.9e-73
Identity = 129/210 (61.43%), Postives = 165/210 (78.57%), Query Frame = 1


Query: 4   KDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLFGLN 63
           KDC H    D + ++  RR+   +  +++++G++IF++WA+LRPSKP  ILQDVT+FGLN
Sbjct: 7   KDCGH----DDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +Q+TISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANCP 183
            VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           A+IKFG+P   IA G A+KFQ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]

BLAST of Lsi02G011930 vs. NCBI nr
Match: gi|661889271|emb|CDP06858.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67
Identity = 120/213 (56.34%), Postives = 159/213 (74.65%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLF 60
           M+ KDC H+ H   E+R+L+RR+  A+   ++LI  +I L+W ILRP+KP  +LQD T++
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPTAISTTMQITISSHNPNTRIGVYYQLMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  QIT+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            D+TVWSPFLYG +VP+AP + +AL +D   G +L NIKVNG+VRWKVG++ISGRY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAIKFQFVQGCYVDI 214
           NCPAYI  G+  +GI  GPAIK+Q VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

The following BLAST results are available for this feature:

BLAST of Lsi02G011930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	1.3e-47	43.93	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
YLS9_ARATH	5.1e-12	28.03	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of Lsi02G011930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW5_CUCSA	2.8e-118	97.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1	[more]
A0A0A0KI64_CUCSA	2.1e-73	60.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1	[more]
A0A068UGU2_COFCA	2.3e-67	56.34	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1	[more]
A0A0D2QBT8_GOSRA	6.7e-67	57.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1	[more]
V4RS29_9ROSI	1.9e-66	56.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1	[more]

BLAST of Lsi02G011930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44220.1	8.0e-64	52.58	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	2.0e-62	51.89	NDR1/HIN1-like 1	[more]
AT5G22200.1	8.3e-61	53.27	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06330.1	3.7e-53	46.95	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G35960.1	7.3e-49	43.93	NDR1/HIN1-like 12	[more]

BLAST of Lsi02G011930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443654\|ref\|XP_004139592.1\|	4.1e-118	97.18	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659127309\|ref\|XP_008463636.1\|	4.5e-117	95.77	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449444813\|ref\|XP_004140168.1\|	3.1e-73	60.56	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659097380\|ref\|XP_008449594.1\|	8.9e-73	61.43	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|661889271\|emb\|CDP06858.1\|	3.3e-67	56.34	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G011930.1	Lsi02G011930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 79..182 score: 1.2
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 1..213 score: 8.2E
None	No IPR available	PANTHER	PTHR31415:SF17	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..213 score: 8.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G011930	Csa1G169420	Cucumber (Chinese Long) v2	culsiB032
Lsi02G011930	CSPI01G15080	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G011930	Cucsa.319610	Cucumber (Gy14) v1	cgylsiB521
Lsi02G011930	CmaCh13G003440	Cucurbita maxima (Rimu)	cmalsiB204
Lsi02G011930	CmoCh13G003670	Cucurbita moschata (Rifu)	cmolsiB194
Lsi02G011930	Cla011041	Watermelon (97103) v1	lsiwmB205
Lsi02G011930	ClCG01G011600	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G011930	MELO3C025577.2	Melon (DHL92) v3.6.1	lsimedB192
Lsi02G011930	Cla97C01G011240	Watermelon (97103) v2	lsiwmbB153
Lsi02G011930	BhiUN452G21	Wax gourd	lsiwgoB264
Lsi02G011930	Cp4.1LG00g01670	Cucurbita pepo (Zucchini)	cpelsiB007
Lsi02G011930	CsGy1G014860	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G011930	CsaV3_1G015180	Cucumber (Chinese Long) v3	cuclsiB033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G011930	Cucurbita maxima (Rimu)	cmalsiB369